Caloenas nicobarica (Nicobar pigeon): 135997967
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Entry
135997967 CDS
T11056
Symbol
COL1A1
Name
(RefSeq) collagen alpha-1(I) chain
KO
K06236
collagen type I alpha
Organism
cnic Caloenas nicobarica (Nicobar pigeon)
Pathway
cnic04510
Focal adhesion
cnic04512
ECM-receptor interaction
cnic04518
Integrin signaling
cnic04820
Cytoskeleton in muscle cells
Brite
KEGG Orthology (KO) [BR:
cnic00001
]
09130 Environmental Information Processing
09133 Signaling molecules and interaction
04512 ECM-receptor interaction
135997967 (COL1A1)
04518 Integrin signaling
135997967 (COL1A1)
09140 Cellular Processes
09144 Cellular community - eukaryotes
04510 Focal adhesion
135997967 (COL1A1)
09142 Cell motility
04820 Cytoskeleton in muscle cells
135997967 (COL1A1)
09180 Brite Hierarchies
09183 Protein families: signaling and cellular processes
00536 Glycosaminoglycan binding proteins [BR:
cnic00536
]
135997967 (COL1A1)
Glycosaminoglycan binding proteins [BR:
cnic00536
]
Heparan sulfate / Heparin
Extracellular matrix molecules
135997967 (COL1A1)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Collagen
COLFI
VWC
VWC2L_2nd
TILa
Motif
Other DBs
NCBI-GeneID:
135997967
NCBI-ProteinID:
XP_065507020
LinkDB
All DBs
Position
24:complement(6094028..6109472)
Genome browser
AA seq
1453 aa
AA seq
DB search
MFSFVDSRLLLLIAATVLLTRGQGEEDIQTGSCVQDGLTYNDKDVWKPEPCQICVCDSGN
ILCDEVICEDTSDCPNAEIPFGECCPICPDTDASPVYPESAGVEGPKGDTGPKGDRGLPG
PPGRDGIPGQPGLPGPPGPPGPPGLGGNFAPQMSYGYDEKAGGMAVPGPMGPAGPRGLPG
PPGAPGPQGFQGPPGEPGEPGASGPMGPRGPAGPPGKNGDDGEAGKPGRPGERGPPGPQG
ARGLPGTAGLPGMKGHRGFSGLDGAKGEPGPAGPKGEPGSPGENGAPGQMGPRGLPGERG
RPGPSGPAGARGNDGAPGAAGPPGPTGPAGPPGFPGAAGAKGETGPQGARGSEGPQGVRG
EPGPPGPAGAAGPAGNPGADGQPGAKGATGAPGIAGAPGFPGARGPSGPQGPSGAPGPKG
NAGEPGAPGNKGDTGAKGEPGPAGVQGPPGPAGEEGKRGARGEPGPAGLPGPAGERGAPG
SRGFPGADGIAGPKGPPGERGSPGPVGPKGSPGEAGRPGEPGLPGAKGLTGSPGSPGPDG
KTGPPGPAGQDGRPGPPGPPGARGQAGVMGFPGPKGAAGEPGKPGERGAPGPPGAVGPAG
KDGEAGAQGPPGPTGPAGERGEQGPAGAPGFQGLPGPAGPPGEAGKPGEQGVPGDAGAPG
PAGARGERGFPGERGVQGPPGPQGPRGANGAPGNDGAKGDAGAPGAPGGQGPPGLQGMPG
ERGAAGLPGAKGDRGDPGPKGADGAPGKDGLRGLTGPIGPPGPAGAPGDKGEAGPPGPAG
PTGARGAPGDRGEPGPPGPAGFAGPPGADGQPGAKGEPGDAGAKGDAGPPGPAGPTGAPG
PAGAVGAPGPKGARGSAGPPGATGFPGAAGRVGPPGPSGNIGLPGPPGPSGKEGGKGPRG
ETGPAGRPGEPGPAGPPGPPGEKGAPGADGPIGAPGTPGPQGIAGQRGVVGLPGQRGERG
FPGLPGPSGEPGKQGPSGSPGERGPPGPMGPPGLAGPPGEAGREGAPGAEGAPGRDGAAG
PKGDRGETGPAGPPGAPGAPGAPGPIGPAGKSGDRGETGPQGPAGPPGPAGARGPAGPQG
PRGDKGETGEQGDRGMKGHRGFSGLQGPPGPPGSPGEQGPSGASGPAGPRGPPGSAGAAG
KDGLNGLPGPIGPPGPRGRTGDVGPVGPPGPPGPPGPPGPPSGGFDFSFLPQPPQEKAHD
GGRYYRADDANVMRDRDLEVDTTLKSLSQQIENIRSPEGTRKNPARTCRDLKMCHGDWKS
GEYWIDPNQGCNLDAIKVYCNMETGETCVYPTQATIARKNWYLSKNPKEKKHVWFGETMS
DGFQFEYGGEGSDPADVAIQLTFLRLMSTEASQNITYHCKNSVAYMDQDSGNLKKALLLQ
GANEIEIRAEGNSRFTYGVTEDGCTSHTGTWGKTVIEYKTTKTSRLPIIDLAPMDVGAPD
QEFGIDISPVCFL
NT seq
4362 nt
NT seq
+upstream
nt +downstream
nt
atgttcagctttgtggattctcggttactgctgttgatagcagcgactgtgctactcacc
cgtgggcaaggagaagaagacatccaaactggaagctgcgtgcaggatggactaacatac
aacgacaaggatgtgtggaaaccagaaccctgccagatctgtgtctgtgacagtggcaac
atcctctgcgacgaggtgatctgcgaggacacctcggactgtcccaatgccgagatcccc
ttcggagagtgctgtcccatctgtcccgacaccgacgcctcccctgtctacccagagagc
gctggagtagagggccctaagggagacactggccccaaaggagacaggggactgcccggc
ccccctggcagagatggcatccctggacagcctggcctcccgggacccccaggccctcca
ggacccccaggccttggcggaaacttcgctcctcaaatgtcttatggctacgacgagaaa
gctggtggcatggccgtgcccggccccatgggcccagctggtccccgtggtctccccggc
cctcctggtgccccgggtcctcaaggtttccaaggtccccctggtgaacccggagaacct
ggtgcttctggtcccatgggtccccgtggtcccgccggcccccctggcaagaatggagac
gatggtgaagctggaaagcccggccgtcccggggagcgcggcccccccggcccccagggt
gcgcggggtctccctggaactgctggtctgccaggcatgaagggtcacaggggtttcagt
ggtctggacggtgccaagggtgagccaggtcccgctggccccaagggcgagcccggcagc
cccggcgagaacggagcccctgggcagatgggtcctcgcggtcttcccggcgagagaggc
cgccccggtccctccggccctgctggcgctcgcggtaacgacggtgctcccggtgctgct
ggtccccctggtcccaccggccccgctggcccccccggcttccccggcgctgctggtgcc
aagggtgagactggtccccagggtgctcgtggcagcgaaggtccccaaggtgttcgcggt
gagcctggtccccccggccctgctggcgctgctggtcctgctggcaaccccggtgctgat
ggtcaacctggtgccaagggcgcaactggtgctcctggcatcgctggcgctcccggcttc
cccggtgcccgtggcccctctggcccccagggtcccagcggtgcccccggccccaagggt
aacgctggtgagcccggtgctcccggcaacaaaggcgacactggtgccaaaggcgaaccc
ggccccgctggtgtccaaggtccccccggcccggctggcgaggaaggaaagagaggagct
cgcggtgagcccggccctgcggggctgcccggccccgccggtgaacggggtgctcccggc
agccgtggtttccccggtgctgatggcatcgccggtcccaagggtccccctggcgagcgt
ggctcccccggccccgtcggccccaaaggatcccctggtgaagccggacgccccggagaa
cccggcctccccggtgccaagggtctgactggaagccccggcagccctggtcccgacggc
aagactggtcccccgggtcccgctggtcaagatggtcgccccggccctcccggccccccc
ggagccagaggccaggctggtgtgatgggtttccccggtcccaaaggtgctgcgggcgag
cccggcaaacccggtgagagaggagcccccggcccccccggcgctgtgggtcctgctggc
aaagacggtgaagctggagcccaaggtccccctggcccaaccggtcccgctggagaaaga
ggtgaacaaggtcccgctggtgctcccggcttccagggtctgccgggccccgctggcccc
cccggcgaggctggcaagcccggtgagcagggtgtccctggagacgctggtgcccccggt
cccgctggtgccaggggtgagagaggtttccccggtgaacgcggtgtccaaggccccccc
ggtccccaaggtcctcgtggtgctaatggtgctcccggtaacgatggtgctaagggcgat
gctggtgctcccggtgcccccgggggtcagggccctcccggtctgcagggaatgcccgga
gaacgcggtgctgccggcctgccaggcgccaagggtgacagaggcgaccccggtcccaaa
ggtgctgacggtgctcctggcaaagacggtctccgtggtctgactggccccataggcccc
cccggccccgctggtgctcctggtgacaagggtgaagctggtccccccggtcctgctggt
cccactggtgcccgtggtgctcctggtgaccgcggtgagcccggccctcccggtcctgct
ggatttgctggcccccccggtgccgacggccagcctggtgctaaaggtgaacctggtgat
gctggagccaaaggcgatgccggcccccctggccctgctggccctactggcgctcctggc
cctgctggtgctgttggtgctcctggtcccaaaggtgctcgcggcagcgctggacctcct
ggtgctactggtttccctggtgctgctggaagagttggtccccccggcccctccggaaac
atcggcctccccggcccccccggccccagcgggaaggaaggtggcaaaggaccccgcggt
gaaaccggccccgctggccgccctggtgagcccggccctgctggtccccccggccccccc
ggcgagaagggcgctcccggcgctgacggccccatcggcgctcccggcacccccggaccc
cagggtatcgccggccagcgcggcgttgtcggcctccctggccagagaggagagagaggc
ttccccgggctgcccggcccctctggtgaacctggcaagcaaggtccctccggctcccct
ggcgagcgcggtccccccggccccatgggcccccctggcctggctggacctcctggtgaa
gctggacgtgagggtgctcccggtgctgaaggtgcccccggtcgtgacggtgctgctggt
cccaagggtgaccgtggtgagactggacccgccggcccccctggtgctcctggtgcccct
ggtgcccctggccctatcggtcctgctggcaagagcggagatcgtggtgagaccggtccc
caaggtcctgctggcccccctggtcctgctggagctcgtggtcctgctggtccacaaggt
ccccgtggtgacaaaggtgaaactggtgaacagggtgacagaggcatgaagggtcacaga
ggcttctctggtctccagggcccacctggtcctcctggctctcctggtgaacaaggtcct
tctggtgcttctggtcctgctggtccacggggtcctcccggctccgctggtgctgctggc
aaagacgggctcaatgggctgcccggccccatcggcccccccggcccccgcggtcgcact
ggtgacgtcggccccgtcggtccccccggcccgcccggcccccctggtcctcctggcccc
cccagcggcggcttcgacttcagcttcctgccccagccgccccaggagaaggcccacgat
ggtggccgctactaccgagctgacgacgccaatgtgatgcgcgaccgggacctggaggtg
gacaccaccctcaagagcctgagccaacagattgagaacatccgcagccctgagggcacc
cgcaagaaccccgcccgcacctgccgcgacctgaagatgtgccacggcgactggaagagc
ggtgaatactggatcgaccccaaccaaggctgcaacctggatgccatcaaggtctactgc
aacatggagacgggcgagacgtgcgtctaccccacccaggccaccattgctcggaagaac
tggtacctcagcaagaaccccaaggagaagaagcacgtctggttcggcgagacaatgagc
gatggcttccagttcgagtacggtggtgagggctccgaccccgccgacgtcgccatccag
ctgaccttcctgcgcctgatgtccaccgaggcgtcccagaacatcacctaccactgcaag
aacagcgtcgcctacatggaccaggacagcgggaacctgaagaaagcgctgctgctgcaa
ggagccaatgagatcgagatccgggctgagggcaacagtcgcttcacctacggtgtcacc
gaggacggctgcacgagtcacactggcacttggggcaagacagtcattgagtacaagaca
acaaagacctcccgcctgcccatcatcgatttggctcccatggacgttggcgctccagac
caggaattcggcatcgacatcagccccgtctgcttcttgtaa
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