Chionomys nivalis (European snow vole): 130887336
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Entry
130887336 CDS
T11437
Symbol
Skic3
Name
(RefSeq) SKI3 subunit of superkiller complex protein isoform X1
KO
K12600
superkiller protein 3
Organism
cnl Chionomys nivalis (European snow vole)
Pathway
cnl03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
cnl00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
130887336 (Skic3)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
cnl03019
]
130887336 (Skic3)
Messenger RNA biogenesis [BR:
cnl03019
]
Eukaryotic type
mRNA degradation factors
3'-5' decay
Ski complex
130887336 (Skic3)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Other DBs
NCBI-GeneID:
130887336
NCBI-ProteinID:
XP_057645706
LinkDB
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Position
15:complement(67823754..67943075)
Genome browser
AA seq
1563 aa
AA seq
DB search
MSSKEVKTALKSARDAIRNKEYKEALKHCKTVLKQEKNNYNAWVFIGVAAAELEQPDQAQ
GAYKKATELEPEQLLAWQGLASLYEKCNHENAKGDLPGVYQKLLDLYESVDKQKWCDVCR
KLVDLHHQEKRYLEVARTWNKLIKTRQEDGADKQELYELWRKLTQMLAEDIEDQDNETQQ
MLWTAFENALDLADSIPSEEHQGLYQRFLQCLSKFPPETTRLRKACEGMISVYPAVQYPL
EVICLHLIESGSLTDEGQQYCCKLVEMNSKSGPGLIGLGVKALQDKKYEDAVSHLTEGLT
ASPLCIAGWYHLAEAQAKVHRPKEAILSCNQALKNIDDHGAAGGHRHQKNLCLLLKAEAL
LKLSDCESSEEAIHILDQVSDADNTPRLLVLQGQAHLNTGAVDKAVKIMENLQASYPDLA
EVHALEGLIHFSKEDYLQAGACFQRALEKDSEVAEYHYQLGLTYWFMGEETRKDKAKALA
HFLKAARLDTYMGKVFCYLGHYYRLVAEDRSRARGCYRKAFELDGSDAESGAAAVDLSVE
LEDMETALDILTAVTQKASAGAAKWAWLRRGLYHLKAGHHSQAVADLQAALRADPKDCNC
WESLGEAYLSRGGYTTALKSFTRASELNPDSTYSVFKVAAIQQILGRYAEAIAQYQLIIE
KKEDYVPALKGLGECYLMMAKAALADFLDGKAVDYVEKALEYFTGALQHRADVSCLWKLA
GDACTSLHAVSPSKVCVHVLGVLLGQQGRREVLKKDELLHLGGRCYGRALKLMSTSNTWC
DLGINYYRQAQHLAETGNSTDGLTELLEKSVHCLKKAVRLDSSNHLYWNALGVIACHRGI
GNYALAQHCFIKSIQAEQINAAAWTNLGVLYLATENIEQAHEAFKMAQSLDPSYLLCWIG
QALIAETVGSYDTMDLFRHTTELSMHTEGAIGYAYWVCTTLQDKSNRETELYRYNILQMN
AVPAAQGVLCKYVERIQNYAPAFTMLGYLNEHLQLRREAAEAYQRAAALLHPTEDQDTYT
VTLRNWGRLLCSIGEYDRAVQAFESTPLEELEDIIGFALALFMKGRYKESNKAYERALTV
VKSEQDKAHVLTAMAITEYKQGQMDAAKALLFKCSILKEPTIESLQALCALGLAMQDATL
SKAALNELLKHVRHKHDYHRCLLTAAVCALQGRSVAVQRQAAKAVHSNPADPALWSLLSR
VVAQYTQRNAKGGAVAGLVAHILDSNHGKEALLYTALNQLAMGSSSAEDGKNVALKTIQK
AAFLSPDDPAVWAGLMAACHADDKLALVSNTQPKRANLHLAQLSAVSIALKDKDILQNYS
QSLEKWCLSQAVTGLIDTGRIAEAESLCTKNLKGNPDQPAVILLLRQVQCKSLLESQKPL
PDAVLEELQKTVMSNSTSVPAWQWLAQVYQSQGMMGAAEMCYRKSLQVASQQGSWSGKLS
SLLKLALLALDVCMANVSGDHWSSLLQEATSEALKVCFSPLAVFLQALLQFNRKMGARET
RRLLERVVYQPGYPNSIVSTARWYLLRHLYAKNDQELIDVLVKNAETHSDKRTLELNEKL
SSQ
NT seq
4692 nt
NT seq
+upstream
nt +downstream
nt
atgtcaagcaaagaagtgaagactgccctgaagagtgcaagagatgcaatcagaaacaaa
gagtacaaagaagctttgaaacattgcaagacagtgctaaaacaagaaaaaaataactat
aatgcctgggtcttcatcggtgttgctgcagctgaactggaacagcccgaccaggcccag
ggcgcctataaaaaggccaccgaactagagccagagcagctgcttgcttggcagggacta
gcaagtttgtatgagaagtgtaatcatgaaaatgctaagggtgatttacctggggtttac
caaaagctgttggatctctatgaaagtgttgacaagcagaagtggtgtgatgtctgtagg
aaactcgtggatctgcatcaccaggaaaagagatacctagaggtggctcggacatggaat
aaattgataaagacacggcaagaagacggggcagacaagcaagagctttatgagctgtgg
agaaaactgactcagatgcttgctgaggacatagaggatcaggataatgaaacccagcag
atgctgtggacggcatttgagaacgcactggacttagcagacagcattcccagtgaagag
caccaagggctctatcagcgtttccttcagtgcttatctaaattccctcctgagacaact
aggctgaggaaggcctgtgaaggaatgatcagtgtctaccctgccgtgcagtatccacta
gaagtgatttgtttacacttgattgagtcagggagtctgacagatgagggacagcagtat
tgttgtaaactagtggaaatgaattcaaaaagtggtccaggcctcattggtttaggcgtt
aaagctttacaagacaagaagtatgaagacgctgttagtcacctaacggaaggcttgaca
gcaagccctctctgcatagctggctggtatcatctagcagaagcccaagccaaagtgcac
agacctaaggaagctattctttcttgcaaccaagcacttaagaacatagatgatcatggt
gcagcaggtggccatcgtcatcagaagaatctttgtcttcttctgaaagcagaggctttg
cttaaactttccgattgtgaatcttcagaggaagcaattcacattcttgatcaggtttca
gatgcagataataccccgcgactgctggttcttcaaggccaggcccatctgaacacaggc
gctgtagacaaggctgtgaagatcatggaaaaccttcaagcttcttaccctgacctggcc
gaagtccacgcacttgagggcttgattcatttttctaaggaggactatctgcaagcagga
gcatgtttccagagagcacttgagaaagactccgaagttgctgaatatcattatcagctt
gggctgacgtactggttcatgggtgaagaaacaagaaaagataaagcaaaggctcttgcc
cattttctgaaggctgcaagactggacacatacatgggtaaagttttctgctatttaggt
cattattaccgccttgtcgctgaagataggagcagagctcgcggatgttacaggaaagcc
tttgaattagatggcagcgatgctgagtctggagcagcagccgtcgacctaagtgtggaa
cttgaagacatggaaactgctttggatatcttaacagcagtaactcaaaaggcaagtgcc
ggagcagcgaagtgggcctggctgaggcgaggcctgtaccatctgaaagctggtcatcat
tctcaagccgtggccgatttgcaggcagcattaagggcagacccaaaggactgcaactgt
tgggaatccttgggagaggcgtacttgagcaggggaggctatacgacagccttgaagtct
ttcactagagccagtgagctgaacccagactccacctacagtgtgtttaaagtggcagcc
atacagcagatcctaggcaggtatgcagaggccatcgctcagtatcagctgatcatcgaa
aagaaagaggattatgtgccggccttgaaaggtttgggggagtgctatctgatgatggcg
aaagcagccttagcggattttctggatggaaaggcggtagactatgtggaaaaagcactg
gaatattttactggggcattgcaacatcgagctgatgtgtcctgcctctggaagctcgct
ggggatgcctgcaccagcctgcatgctgtttctccatctaaagtgtgtgttcatgtctta
ggagtcctcctcggtcagcagggaagaagagaagtactaaagaaagatgagcttctgcat
cttggaggaaggtgttatggtcgtgcgttaaagctgatgtctacttctaatacatggtgt
gatcttggaattaattattaccgccaagcacagcatctagcagagacaggcaacagcacg
gatggtcttacagagctactggagaaatctgtgcattgtctgaaaaaggctgtgagactg
gacagtagtaatcacttatactggaatgctcttggtgtgattgcatgtcaccgtggtatt
ggaaattatgcccttgctcagcactgttttatcaaatcaatccaggcagaacaaattaat
gctgctgcctggaccaacttaggcgtgctctaccttgcgactgaaaacattgagcaagct
catgaagctttcaaaatggctcagtctcttgatccgtcttatttactgtgctggattgga
caagcccttattgcagagacagttggaagttatgacaccatggatctcttcagacacact
acagagctcagtatgcatactgaaggagccataggttatgcatattgggtttgtacaaca
ttacaagacaaaagcaacagagaaacggagctctacaggtataacatcctccagatgaac
gctgtccctgcagcacagggtgttctgtgtaaatacgtggaaaggattcagaattacgct
ccagctttcacgatgctgggttatttaaacgaacatctgcagctgagaagagaagccgca
gaggcgtaccaaagggcggctgcgctgttacatcccacagaagaccaagatacttacact
gttacactgagaaattggggcagattgctatgctccattggtgaatatgacagagctgtg
caagcctttgagtcaacgccccttgaggaactagaggacatcatagggtttgctttggcc
ttgtttatgaagggacggtataaggagagcaacaaagcctatgagagagccttgaccgtt
gtgaaatcagagcaagacaaagctcatgtcttgacagccatggcaataacagaatacaaa
caaggacaaatggatgcagccaaggcattgcttttcaaatgctctattttaaaggaacca
accatcgaaagcctgcaggccctgtgtgccctagggttggcaatgcaggacgccacactg
tcgaaagcagctcttaatgagttactgaagcatgtcagacacaagcacgattaccacagg
tgccttctcacggcggcagtgtgtgcactgcagggccgcagcgtggctgtgcaaagacag
gccgctaaggctgtccacagtaacccagctgacccggctctttggtctttgctgtctcga
gttgttgctcagtacactcaacggaatgcaaagggaggtgctgtagctggactcgtggct
catattctggattcaaatcatggaaaggaggcgttattgtatactgcgttaaaccagttg
gccatgggaagcagttcagcagaagatggaaaaaacgttgctctaaagactattcagaag
gcagctttcctttctccagatgaccccgctgtctgggctggactgatggcagcctgccat
gctgatgacaaactggccttggtcagcaacactcagccaaagagggccaatttgcacttg
gcacagctgtctgctgtttctattgcacttaaggacaaagacattttgcagaattacagc
cagtcacttgaaaagtggtgtctctcccaagctgtcactggtctaattgacacaggaaga
atagctgaagctgaatctctgtgcacaaagaatttaaaaggcaaccctgatcagccagct
gttatcttgctgttgagacaagtgcagtgtaaatccctcctggagtctcagaagcccctc
ccagatgctgtactggaagaactgcaaaaaacagtcatgtccaactccacctctgttccg
gcctggcagtggctggcacaggtgtatcagtcccaaggaatgatgggtgctgcagagatg
tgctacagaaagagtctacaagtggcatcccaacagggcagctggagtgggaagctctcg
agtctgttgaagctagcactgcttgcattggatgtgtgcatggctaatgtttctggtgat
cactggtcgtccttgcttcaagaagccacaagtgaggccttgaaagtttgcttctctccg
ctggctgtcttcttgcaagctttgttacagttcaaccgtaagatgggagcaagagagacg
cggcgactcttggagagagtagtgtaccagcctggctatcccaactcaattgtatctaca
gcacgttggtacctcttaagacacctctatgcgaaaaatgaccaggagctcattgatgtg
ttggtgaagaatgctgaaacccacagtgataaaaggacattggaactgaatgagaagctg
tcatcacagtaa
DBGET
integrated database retrieval system
