Chryseobacterium nepalense: M0D58_08710
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Entry
M0D58_08710 CDS
T08142
Symbol
rpoB
Name
(GenBank) DNA-directed RNA polymerase subunit beta
KO
K03043
DNA-directed RNA polymerase subunit beta [EC:
2.7.7.6
]
Organism
cnp
Chryseobacterium nepalense
Pathway
cnp03020
RNA polymerase
Brite
KEGG Orthology (KO) [BR:
cnp00001
]
09120 Genetic Information Processing
09121 Transcription
03020 RNA polymerase
M0D58_08710 (rpoB)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
cnp03021
]
M0D58_08710 (rpoB)
03400 DNA repair and recombination proteins [BR:
cnp03400
]
M0D58_08710 (rpoB)
Enzymes [BR:
cnp01000
]
2. Transferases
2.7 Transferring phosphorus-containing groups
2.7.7 Nucleotidyltransferases
2.7.7.6 DNA-directed RNA polymerase
M0D58_08710 (rpoB)
Transcription machinery [BR:
cnp03021
]
Prokaryotic type
Bacterial type
RNA polymerase
Core subunits
M0D58_08710 (rpoB)
DNA repair and recombination proteins [BR:
cnp03400
]
Prokaryotic type
SSBR (single strand breaks repair)
NER (nucleotide excision repair)
TCR (transcription coupled repair) factors
DNA-directed RNA polymerase complex (RNAP)
M0D58_08710 (rpoB)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RNA_pol_Rpb2_6
RNA_pol_Rpb2_2
RNA_pol_Rpb2_3
RNA_pol_Rpb2_7
RNA_pol_Rpb2_45
RNA_pol_Rpb2_1
Motif
Other DBs
NCBI-ProteinID:
UPQ74142
UniProt:
A0ABY4K0Q1
LinkDB
All DBs
Position
complement(2019830..2023651)
Genome browser
AA seq
1273 aa
AA seq
DB search
MSKTTATTKGTPRINFSSAKGKIITPDFLDIQIESFREFFQLDTLPEDRTNEGLYKTFQE
NFPITDSRNQFVLEFLDYLVDSPRYSIDECVERGLTYSVPLKARLKLYCTDPEHEDFQTV
VQDVYLGPVPYMTPSGSFIINGAERVIVTQLHRSPGVFFGQTYHANGTKLYYSRIIPFKG
SWMEFTTDINSVMYAYIDRKKKLPLTTLLRAIGYESDKDILQIFDLAEEVKVSKAALKKV
EGRTLAARVLNTWFEDFVDEDTGEVVSIERNEIILDRETILEKEHLDLILDAGVKSILIH
KENSNEFSIIQNTLQKDPTNSEKEAVEYIYRQLRNADPPDEETARGIIEKLFFSEQRYSL
GEVGRYRLNKKLGLNIPTTTEVLTKEDIIAIVRHLIELVNSKAEVDDIDHLSNRRIKTVG
EQLAGQFGVGLSRIARTIKERMNVRDNEIFTPLDLVNAKTLTSVINSFFGTNQLSQFMDQ
TNPLSEITHKRRLSALGPGGLSRERAGFEVRDVHHTHYGRICPIETPEGPNIGLISSLGI
YAKINRLGFIETPYRKVADSKIDLNADPIYLNAEDEEDKVIAQANVELSDNGDFLTDRII
ARLDGDYPVVEPSQVNLIDVAPNQISGISASLIPFLEHDDANRALMGSNMMRQAVPLLKP
QAPVVGTGLEQQVARDSRILINAEGTGTVEYVDADRIVIKYERSEDEDLVQFESATKTYN
LTKFRKTNQSTTITLRPNVRVGDVVEKGQVLCDGYATEKGELALGRNLVVAFMPWKGYNF
EDAIVINEKVVREDWFTSIHVDEYSLEVRDTKLGMEELTADIPNVSEEATKDLDENGMIR
IGAEVKPGDIMIGKITPKGESDPTPEEKLLRAIFGDKAGDVKDASLKADSSLRGVVIDKK
LFSRNIKDKKKRTEEKLKLEEIENTYKAKFDDLRNTLIEKLNTLVSGKTSQGVKNDLDEE
IIGKGVKFTHKLLTSVEDYVNVSGSDWTVDNDKNELIKQLIHNYKIKYNDIQGVKNREKF
AISIGDELPAGIMKLAKVYIAKKRKLNVGDKMAGRHGNKGIVSRIVREEDMPFLEDGTPV
DIVLNPLGVPSRMNIGQIYETVLGWAGQKLGLKFATPIFDGATLDQITEYTDKAGLPKFG
HTYLYDGGTGERFTQAATVGVIYMLKLGHMVDDKMHARSIGPYSLITQQPLGGKAQFGGQ
RFGEMEVWALEAFGASNILREILTVKSDDVIGRAKTYEAIAKGESMPEPGIPESFNVLLH
ELQGLGLDVRLEE
NT seq
3822 nt
NT seq
+upstream
nt +downstream
nt
atgagtaaaacaacagcaacaactaagggaacgccgagaattaatttctcgtcagcaaaa
ggaaaaatcatcactcctgacttcctggacatccagatcgagtcttttagagagtttttc
cagcttgatacgcttcctgaagacagaacgaatgaaggtctttacaagacttttcaggaa
aacttcccgattacggattccagaaaccaatttgtgttggaattcctggattatctggta
gattctccgcgttattcaatcgatgagtgtgtggaaagaggattgacttattcagttcct
cttaaagcaaggcttaaattgtattgtacagacccagaacacgaggatttccaaaccgta
gttcaggatgtatacttaggtccggttccttatatgactcctagtggatctttcatcatc
aatggtgctgagagagttatcgttacccagttacaccgttcgcctggtgtattcttcgga
cagacgtaccacgcaaacggaaccaaattatattattcaagaatcattccttttaaagga
tcttggatggaatttacaaccgatatcaacagcgttatgtacgcgtatatcgaccgtaag
aaaaagttaccattaacaactttattaagagcaatcggatacgaatctgataaggacatc
cttcagatcttcgatcttgctgaggaagtgaaagtttctaaagctgcccttaaaaaagta
gaaggaagaacattagctgcgagagttttgaacacttggtttgaagatttcgtagacgaa
gatacaggtgaagtagtttctatcgaaagaaacgagatcatcttggacagagaaactatt
cttgaaaaagaacatttagatcttattcttgatgctggtgtgaaatcaatcctgattcac
aaagaaaacagcaatgaattctctatcatccagaatacattacagaaagaccctaccaac
tctgaaaaagaagcggtagagtacatctatcgtcagttaagaaatgcagatccgccagat
gaagaaacagcaagaggaatcattgaaaaattattcttctctgagcaaagatattcatta
ggtgaagttggacgttacagactaaacaaaaagttaggtcttaatattcctacaacaact
gaggttcttaccaaagaagatatcatcgcgatcgtaagacacttgatcgaattggtaaat
tctaaagctgaagttgatgatatcgaccacttatcaaacagaagaattaaaacggttggt
gagcagttggcaggacagttcggtgtaggtctttcaagaattgcaagaacaatcaaggaa
agaatgaacgttagagataacgaaatctttacgccgcttgatcttgttaatgctaaaacg
ttaacatcagtaatcaactcgttctttggtaccaaccagctttctcagttcatggaccag
accaacccgctttcagaaatcacgcacaagcgtagactttctgcactagggcctggaggt
ttatcaagagaaagagcaggtttcgaggttcgagacgttcaccatacgcactacggaaga
atttgtccgatcgaaactccggaaggaccaaacatcggtttgatttcatctttaggtatt
tatgctaaaatcaacagacttggtttcatcgaaacgccgtatagaaaagtagcagacagc
aagattgatcttaatgctgatcctatctacttaaatgctgaagatgaagaagataaagta
attgctcaggcaaacgttgaattgagtgataatggagacttcttaacagacagaattatt
gcaagattggatggtgactatccggtagttgagccttctcaggttaatcttatcgatgta
gcaccaaaccagatttccggtatttcagcttcattgattccgttcctggagcatgatgat
gcgaaccgtgcattgatgggatccaacatgatgcgtcaggcagttcctctattgaagcca
caggctccggtagtgggtacagggcttgagcagcaggttgcaagagattcaagaattttg
attaacgctgaaggtacaggaactgtagaatatgttgatgctgacagaatcgttattaaa
tatgaaagaagcgaagacgaagatttagtacaattcgagtctgctactaaaacatataac
ttaactaagtttagaaaaaccaaccaaagtacaaccattaccctaagaccaaatgtaaga
gtaggtgacgtagtggaaaaaggacaggtactttgcgacgggtatgctactgaaaaagga
gaattggctcttggtagaaacttagtggttgcgttcatgccttggaaaggatacaacttc
gaggatgcgatcgtaatcaacgaaaaagttgtacgtgaagactggtttacttcaatccac
gtagatgaatattctcttgaagttcgtgataccaaattaggtatggaagagcttacagca
gatattccaaacgtttctgaagaagctactaaagatcttgacgagaacggtatgatcaga
atcggggctgaagtgaagcctggagatatcatgattggtaaaatcaccccaaaaggtgaa
tctgacccgactcctgaagaaaaacttcttagagcgattttcggtgacaaagccggtgat
gtaaaagatgcttcattaaaagcagattcttcattaagaggtgttgtgatcgacaagaaa
ttgttctcaagaaacattaaagataaaaagaaaagaactgaggaaaaacttaagcttgaa
gaaattgaaaacacttacaaggctaagtttgatgatttgagaaacactttaattgaaaaa
ttaaatacactcgtaagcggtaaaacttctcagggcgttaaaaacgaccttgacgaagaa
atcatcggtaaaggggtgaagtttactcacaaattattgacttcagttgaagactatgta
aacgttagcggttcagattggacggttgataacgataaaaatgaattgatcaaacaatta
attcacaactacaaaatcaagtacaacgatattcaaggggttaaaaaccgtgagaaattc
gcaatttcaatcggagatgaacttcctgcaggtatcatgaagttggctaaagtttacatc
gctaagaaacgtaagctgaatgtaggagataaaatggcaggacgtcacggtaacaaaggt
atcgtttcgagaattgttcgtgaagaagatatgccattccttgaagacggaacaccagta
gatatcgtattgaatccacttggggtaccttcacgtatgaacatcggtcagatctatgaa
acagttcttggatgggctggtcagaaattaggattgaagtttgcaacaccgatctttgat
ggggcaacgcttgatcagattactgagtacacagataaagcaggtcttcctaaattcggt
cacacctatctttatgatggtggtaccggagaaagatttactcaggcagcgaccgtgggt
gtgatctacatgctgaaattaggtcacatggttgatgataagatgcacgcacgttcgatc
ggtccatactcattgattactcagcagccgttaggaggtaaagctcagttcggaggtcag
agattcggagagatggaggtttgggctcttgaagcattcggagcatcaaatatcctgaga
gagatccttaccgtgaagtcggatgacgtaattggtagagcgaaaacttacgaagccatt
gctaaaggtgaatcgatgcctgaaccaggtattccggaatcattcaatgtactacttcat
gagttacaaggtcttggattagacgtaagactagaggaataa
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