Catalinimonas niigatensis: PZB72_10015
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Entry
PZB72_10015 CDS
T10977
Symbol
rnr
Name
(GenBank) ribonuclease R
KO
K12573
ribonuclease R [EC:
3.1.13.1
]
Organism
cnq Catalinimonas niigatensis
Pathway
cnq03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
cnq00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
PZB72_10015 (rnr)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
cnq03019
]
PZB72_10015 (rnr)
03016 Transfer RNA biogenesis [BR:
cnq03016
]
PZB72_10015 (rnr)
Enzymes [BR:
cnq01000
]
3. Hydrolases
3.1 Acting on ester bonds
3.1.13 Exoribonucleases producing 5'-phosphomonoesters
3.1.13.1 exoribonuclease II
PZB72_10015 (rnr)
Messenger RNA biogenesis [BR:
cnq03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Ribonucreases
PZB72_10015 (rnr)
Transfer RNA biogenesis [BR:
cnq03016
]
Prokaryotic type
tRNA degradation factors
PZB72_10015 (rnr)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RNB
CSD2
OB_RNB
S1
OB_Dis3
OB_RNR_1st
RNase_II_C_S1
CbiK
DUF4712
ANAPC2
S1_RRP5
Motif
Other DBs
NCBI-ProteinID:
WPP52715
LinkDB
All DBs
Position
complement(2469797..2471959)
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AA seq
720 aa
AA seq
DB search
MSRKRNKQKTRSRSKKQSYTNEQLTYMALGLLDANITKAYSSRQIAKKLDIHDKVSISTL
PNVLDKLEEEGKVKKIINGKYQTTAEPKVLLGKVDFVNPRFAFIICDELEQDIKVEADHM
QNAIDGDIVKVLSFGPGVGDKRPEGEVIEIVERTRQEFVGRVEMSNRFAFVIPDSRKMHH
DIFVRLDDLEGAKNNDKVIVKLTQWPEEDKSPVGKVTRVLGPAGENNAEIHSIMAEFDLP
FEFPQDVQEETSKIKFSLTKKELANRRDFREVTTFTIDPVDAKDFDDALSIQKLDEDHWE
IGVHIADVTHYLKENTALEREAEERATSVYLVDRVIPMLPEKLSNELCSLRPNEDRLTFA
AVFKMDKNAKVKDVWLGRTVIHSDQRFAYEDAQERIESGKGTFAEEIVTLNNLAKKLRNQ
RFAEGAVNFETTEVRFKLDEAGNPLEVVPKVRKDAHKMIEEFMLLANKKVAEFVYQYKKG
KEKNTFVYRVHDYPDITKIQEFSQFAQRFGYKLHTSDEAISASLNELMAAVEGKPEQDIL
QQLAIRTMAKAKYTTEAKGHFGLAFQHYTHFTSPIRRYPDVMVHRLLQKYLDDVQVEGRE
KYEKKCEHSSEQEKRAADAERASIKYKQVQYMQQFGLDKVFDGIVSGVTEWGVYVEMIET
HCEGMVRMSEIEDDYYEYDAKNFRIIGQRRKRIIALGDKVKVRVLKTDMDRRTIDLEFVK
NT seq
2163 nt
NT seq
+upstream
nt +downstream
nt
atgtcaagaaaaagaaataaacagaaaacccgttcccgctccaaaaagcaatcctatacc
aacgagcaacttacctatatggctctgggtctgttggatgctaacattaccaaagcttac
tcttcccgccaaattgccaaaaaactggatattcatgataaagtttccataagcactttg
cccaatgtgctggataaactggaggaagaggggaaggtaaagaaaattatcaacggaaaa
tatcagacaactgctgaacccaaagtgcttttaggtaaggtagattttgtcaacccccgc
tttgctttcatcatttgcgacgaactggagcaggatatcaaggtggaggcagatcacatg
caaaatgccattgacggagatatcgtcaaggtactatcttttggaccgggtgtcggtgat
aaacgtcccgaaggggaagtaatagagatcgtagagcgtacccgtcaggagtttgtgggt
agggtagagatgtccaaccgctttgcttttgtaattcccgacagccgcaagatgcaccac
gacatcttcgtacgcctggatgacctggaaggagcaaaaaacaatgataaagttatcgta
aagctaacccagtggcctgaagaagataaaagtccggtgggaaaagtgacgcgggtactg
gggcctgccggtgagaacaatgccgaaattcactccatcatggcagaatttgatctgccg
tttgagttcccccaagatgtacaggaagaaaccagtaaaatcaaatttagcctgaccaag
aaggaactggccaataggcgtgacttccgggaggtcactacttttaccattgacccggtt
gatgccaaagattttgatgatgctttatctatccagaagctggacgaagaccattgggag
ataggtgtccacattgccgacgtaacccattatctgaaagaaaatactgcgctggagcgt
gaggcagaagaaagggctacttcagtatacctggtagatcgggtgattcccatgcttccc
gaaaagctttccaacgaactgtgctctctgcgccccaatgaagatcgcctgacatttgcc
gccgtttttaaaatggacaaaaacgcgaaagtgaaagatgtgtggctgggccgtactgtc
atccattcggatcagcgtttcgcctacgaagatgcccaggagcggatagaaagtggcaaa
ggaacgtttgccgaggaaattgttaccctaaacaatctggcaaaaaaactaagaaatcag
cgctttgcagagggagcagtaaattttgaaactactgaagtacgttttaaactggatgaa
gccggtaatccgctggaagtggtacccaaagtgcgtaaggatgctcacaaaatgattgaa
gagtttatgctgctggccaacaaaaaggtagcggagtttgtctaccagtataaaaagggc
aaagagaaaaatacttttgtgtaccgggtacacgattatccggatattactaaaattcag
gagttttcccaatttgcccaacgttttggctacaagctgcatacctcagatgaagcaatt
tctgcatcgctcaacgaactaatggcagcggtagagggtaagcccgagcaggatattttg
cagcaactggccatccgtaccatggccaaggccaaatataccacggaagccaaggggcac
tttggactggcttttcaacactacactcattttacctctcccatacgccgctatcccgat
gtgatggtacaccgcctcttgcaaaagtatctggatgatgtgcaggtggagggacgcgaa
aagtatgaaaaaaaatgtgagcattcttcggaacaggaaaaacgcgctgccgatgccgaa
cgggcttctatcaaatacaagcaggtgcagtatatgcaacagtttggtctggataaggtg
tttgatggcatcgtatcaggagtaacggaatggggcgtctatgtagaaatgatagaaacc
cattgcgaaggcatggtgcgaatgtcggagattgaggatgattactatgaatatgatgcc
aagaactttcgcattatcgggcagcggcgcaagcgcatcatcgccctgggtgataaagtg
aaggtgcgggtcctcaaaacggatatggaccgccgtaccatagacctggaatttgtgaaa
taa
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