Contarinia nasturtii (swede midge): 116338345
Help
Entry
116338345 CDS
T08003
Name
(RefSeq) LOW QUALITY PROTEIN: transient receptor potential-gamma protein
KO
K04967
transient receptor potential cation channel subfamily C member 4
Organism
cns
Contarinia nasturtii (swede midge)
Pathway
cns04745
Phototransduction - fly
Brite
KEGG Orthology (KO) [BR:
cns00001
]
09150 Organismal Systems
09157 Sensory system
04745 Phototransduction - fly
116338345
09180 Brite Hierarchies
09183 Protein families: signaling and cellular processes
04040 Ion channels [BR:
cns04040
]
116338345
Ion channels [BR:
cns04040
]
Voltage-gated cation channels
Transient receptor potential channel (TRP)
116338345
BRITE hierarchy
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
TRP_2
Ion_trans
Ank_2
PKD_channel
Ank
Ank_3
Ank_4
Ank_5
Ank_KRIT1
Holin_BhlA
Motif
Other DBs
NCBI-GeneID:
116338345
NCBI-ProteinID:
XP_031619392
LinkDB
All DBs
Position
Unknown
AA seq
1167 aa
AA seq
DB search
MTSNLRRLSGATELKIDINDPITANNPKYCNKKIKRHSIHGMMEEENVIRPHQEIQALNF
DEKKFLLAVERGDVAGTRRILQDNEEHDRININCVDPLGRSALLMAIDNENLDMVDLLIN
YKVDTKDALLHAISEEFVEAVEMLLDHEDQRKEGQHSWETMPSETATFTSDITPLILAAH
RDNYEIIKILLDRGANLSLPHDARCGCDECVISRLDDSLRHSRSRINAYRALASPSLISL
SSKDPILTAFELSWELRRLSFLEHEFKSEYQELRRQCQDFATALLDHTRTSNELEVMLNH
DPTNLSTPMFEHGERMHLNRLKLAIKLRQKKFVAHPNVQQLLASIWYEGLPGFRRKNMAL
QALEIVRIGILFPLFSITYIIAPHSRIGQTMRKPFIKFICHSASYFTFLFLTISNNHFFL
FTGXAVSCSMXTVPIYHVVFSPLSGSGLIWSEVKQLWDIGLQEYVNDMWNVIDFVTNSLY
VATVALRVVSYFQVQKEMVNNKNAPDLPREQWHSWDPMLLSEGLFSAANIFSSLKLVYIF
SVNPHLGPLQVSLSRMVMDIMKFFFLYVLVLFAFSSGLNQLLWYYADLEKRRCPELNFSN
NFTPNDTQTMAADHNACYVWRRFANLFETTQTLFWAVFGLVDLDSFELEGIKIFTRFWGM
LMFGTYSVINIVVLLNLLIAMMNHSYQLISERADVEWKFARSRLWISYFEEGGTAPPPFN
VIPAPKSIWYIFEWMKKKFFGRSKTIKKEHMKTIRKKAKQANEREFKYQQIMRNLVRRYV
TVQQRKAESQGVTEDDVNEIKQDISAFRCEIVEILKGSGMNTSTVSGQGAGGKKNRQKER
RLMKGFNLALTSTQGMNALAPVAEFMSPFHSGSENCDYYGSTFAGLLNANQSGITPRRNP
TMYSMQQYSSSQSSFSESFGTIGRLGKIGSKLRNTSQKRRWGTLIEAARHGTGSVSRFIG
RSRSEDSVCNSIPANSANNNKGSASRSNSAGSDEGVTASPTDSNPSMDKPDVNTAPTTKS
SSSSAKYKNKDHHAHLYGFGALAALKRKRKKFSKSRNTSPVLEPSAPSKTESSPSKKILK
RASSVPSRAEDEKSQTHDGEQTSKSPESSQHEGLTPSTTDESVKFSTALLDPLLRQTHSL
NESSSHDIPQLPNVTPVRGHINYQGWL
NT seq
3504 nt
NT seq
+upstream
nt +downstream
nt
atgacgtcaaatttaaggcgcctttcgggcgctaccgaactcaaaattgatatcaacgat
ccgataacagcaaataatccaaaatattgcaataaaaaaataaagcgacacagtattcat
ggcatgatggaagaggaaaatgtaattcgtccacatcaagagatccaagctttgaatttc
gatgagaaaaagtttttgttagctgtggaacgaggcgatgtagccggcaccagaaggatt
cttcaagataacgaggaacatgaccgcatcaacataaattgtgttgatccattaggccgc
tcagcacttctaatggccattgataatgaaaatcttgatatggttgatttacttatcaat
tacaaagtggatacaaaagatgctcttttacacgccatttctgaggagtttgttgaagcg
gttgaaatgcttctcgatcatgaagaccaacgaaaagagggacaacactcatgggaaaca
atgccctctgagactgcaacgttcacctcagatataacaccactaattttagctgcacat
cgcgataattatgaaattataaaaattttactagaccgtggggcaaatttaagtttgccc
catgacgccagatgtggttgcgatgaatgtgtaatttcacgcttggatgattcgctgcga
cactcacgttctcgaataaatgcatatagagcactggccagtccaagtttgatatcactc
tcttcaaaagatcctatattaaccgcttttgaactctcgtgggaactgcgacgcttgagc
tttttggagcatgaattcaagagtgaataccaagaattgagaagacaatgtcaagatttt
gcgaccgcattattagatcacacacgaacatcaaatgaacttgaagtcatgctaaatcat
gatccaaccaatttatcaacaccaatgtttgaacacggcgaacgaatgcacctgaaccgc
ttgaaattggcaatcaaattacgacaaaaaaagtttgttgcccatccaaatgtacaacag
ttgctcgccagtatatggtacgaaggtttacctgggttccgacgaaaaaatatggcctta
caagcacttgaaatcgtccgaatcggaatactttttccattgttttcaatcacatatata
atagctccgcattcacgaatcggtcaaacgatgcgcaaaccttttattaaattcatttgt
cacagcgcttcatacttcacattcctttttctcacaatttcaaataaccatttcttttta
tttacagggtgagcggtaagttgttctatgtaaacggttcccatataccatgtcgtattt
tctcctctttccggttcaggtttgatatggagcgaagtgaagcaactatgggacattggg
cttcaagaatatgtgaatgatatgtggaatgttatagattttgtaacaaattcgttatac
gtggcaacggtcgccttacgcgttgtctcttattttcaagtacaaaaagaaatggtgaac
aataaaaatgctcctgatttgcctcgcgagcagtggcattcatgggatccaatgttgtta
tcagagggcctatttagtgcagcgaatatattcagttcgctgaaattagtttacatattc
tcagtgaatccccatcttgggccacttcaagtgtcactttcacgtatggtaatggacatc
atgaagtttttcttcctctatgtgctcgtgttatttgccttcagttcaggtctcaatcag
ttgctatggtactatgcggacttggaaaaaagacgctgccccgaattgaattttagcaat
aactttactccgaatgatacgcaaacaatggcagccgaccataatgcctgctatgtttgg
agacgattcgctaacttatttgaaacaacacaaactctgttctgggccgtttttggtttg
gtcgacttggacagctttgaattggaaggcataaaaatatttacacggttctggggtatg
ctgatgttcggaacatactctgtgataaacatcgtggtgctactaaatcttctcattgca
atgatgaatcattcgtatcagttgatatcggaacgggctgatgtggaatggaaattcgca
agatctagattatggatcagttattttgaagaaggcggtaccgctccaccaccgtttaat
gttataccagctcccaaatcaatttggtacatttttgagtggatgaagaaaaagtttttc
ggccgttcaaaaaccataaaaaaagaacacatgaaaaccattcggaagaaagcaaaacaa
gcaaatgaacgggaatttaaataccagcaaattatgcgaaatttggtgcgtcgctatgta
acagtacagcagcgtaaggctgaatcgcaaggtgtcacagaggatgatgtaaacgaaatc
aagcaagatatttcggcatttcgttgcgaaattgttgagatactcaaaggtagcggcatg
aacacaagtactgtgtcaggacaaggagctggaggaaagaagaatcgtcaaaaggaacga
cgcttgatgaaaggattcaatttagcgttgacaagtacacaaggtatgaatgcattagct
ccagtagccgaattcatgtcaccatttcattcaggcagcgaaaattgcgactactatgga
tcaacatttgcgggcctactgaatgccaatcaatctggaattacacctcgacgaaatcca
acaatgtactcaatgcaacaatattcgtcgtcacagagttcgttcagtgaatcgtttggc
accattgggcgcttgggtaaaattggatcgaaactacgcaatacatcgcaaaagagacga
tggggtacattgattgaagcggcacgtcatggcaccggcagtgtatcacgttttattgga
cgatcacgctccgaagattccgtatgcaattcaatacctgcaaacagtgcgaacaacaat
aaaggatcagccagtcgaagcaatagtgccggttccgacgaaggtgtcactgcatctcca
actgattcaaatccaagtatggacaaacctgacgttaacaccgctcctactactaaatct
tcttcttcttctgctaaatataaaaacaaagaccatcatgcgcatttatatggattcggc
gccttggctgcgctaaaacgaaagcggaaaaagttcagcaaaagtcgaaatacaagtcct
gttttagagccatcggcaccatcaaaaaccgaatctagtccaagtaaaaagatccttaaa
cgagcatcgagtgtgccatcacgtgcggaagacgagaaaagtcaaacgcatgacggtgaa
caaacaagtaaaagtccagaatcatcacaacatgaaggattgactccttcaacaaccgac
gaaagtgtaaaattttcgacggcactactggatccattgttgcgacagacacattcccta
aacgagtctagctcacacgatataccacagttgcccaatgtaacaccagtacgcggacat
attaactatcagggatggctttaa
DBGET
integrated database retrieval system
