Contarinia nasturtii (swede midge): 116341237 Help Entry 116341237         CDS       T08003                                  Name (RefSeq) pre-mRNA-processing factor 19   KO K10599   pre-mRNA-processing factor 19 [EC:2.3.2.27] Organism cns  Contarinia nasturtii (swede midge) Pathway cns03040   Spliceosome cns04120   Ubiquitin mediated proteolysis Brite KEGG Orthology (KO) [BR:cns00001]  09120 Genetic Information Processing   09121 Transcription    03040 Spliceosome     116341237   09123 Folding, sorting and degradation    04120 Ubiquitin mediated proteolysis     116341237  09180 Brite Hierarchies   09182 Protein families: genetic information processing    03041 Spliceosome [BR:cns03041]     116341237    04121 Ubiquitin system [BR:cns04121]     116341237    03400 DNA repair and recombination proteins [BR:cns03400]     116341237 Enzymes [BR:cns01000]  2. Transferases   2.3  Acyltransferases    2.3.2  Aminoacyltransferases     2.3.2.27  RING-type E3 ubiquitin transferase      116341237 Spliceosome [BR:cns03041]  Complex B   Other components    Prp19 complex     116341237  Complex C    Prp19-CDC5 complex     116341237 Ubiquitin system [BR:cns04121]  Ubiquitin ligases (E3)   U-box type E3    116341237 DNA repair and recombination proteins [BR:cns03400]  Eukaryotic type   Other factors with a suspected DNA repair function    PSO4 complex     116341237 BRITE hierarchy SSDB OrthologParalogGFIT Motif Pfam:  WD40_Prp19 Beta-prop_WDR5 Beta-prop_THOC3 Beta-prop_WDR3_1st WD40 WD40_WDHD1_1st Beta-prop_WDR36-Utp21_2nd Prp19 WD40_CDC20-Fz Beta-prop_EML_2 WDR55 WD40_Gbeta Beta-prop_CAF1B_HIR1 Beta-prop_WDR3_2nd WD40_MABP1-WDR62_2nd Beta-prop_WDR36-Utp21_1st Beta-prop_TEP1_2nd Beta-prop_WDR90_POC16_2nd EIF3I Beta-prop_EML Beta-prop_TEP1_C WD40_MABP1-WDR62_1st Beta-prop_WDR75_1st Beta-prop_WDR41 ANAPC4_WD40 Beta-prop_Aladin Beta-prop_EIPR1 Beta-prop_Vps41 Beta-prop_SPT8 Beta-prop_IFT140_1st Beta-prop_WDR19_1st WDR90_beta-prop_4th Beta-prop_SCAP U-box NBCH_WD40 Beta-prop_HPS5 Beta-prop_RIG_2nd Beta-prop_DCAF4 Tricorn_2nd PROPPIN Beta-prop_VPS8 Cytochrom_D1 Beta-prop_ACSF4 PAS_11 TPR_MLP1_2 zf-Nse Motif Other DBs NCBI-GeneID:  116341237 NCBI-ProteinID:  XP_031624045 LinkDB All DBs Position Unknown AA seq 511 aa AA seqDB search MALVCAITNEVPEQPVLSPVSGAIFERRIIEKYLLENGCDPITGKELKAEDLIEVKVPPI VRPKPPSATSIPAALKTMQDEWDALMLHTFSQRQQLQTARQELSHALYQHDAACRVIARL NKEVAAAREALATLKPQAGISSSAAAGGQQAMDVDTTSYTTQPVEQTGMTPEIIEKLQEK ATILTEERRNRGRTLPKDLVVPEQIRNFKILASHAGLHSASAPGILALDVCSFNDNKILT GGNDKNATVFNKDTQQIVSVLKGHTKKVTKVIYHPETRDDAETVITASPDQTIRIWNVPT SQTKFLLSCHTGPVTGLSLHPTGDYLLSTSSDKHWAFSDIKTGRLVTKVMDMNEVGLTAA QFHPDGLIFGTGTDDSQVKIWDVKEQSNVANFPGHTGPISAISFSENGYYLATAADDACV KLWDLRKLKNIRTIQLDDGYEVKDLCFDHSGTYLAIAGTDVRIYLCKQWQELCVFNDHTS SATGVRFGANADYLASTSMDRTVKFYGLDKK NT seq 1536 nt NT seq  +upstreamnt  +downstreamnt atggctttagtctgtgcgattacaaatgaagtgcctgaacagccggtcttgtcaccagta tcgggcgcaattttcgagcgacgcatcattgaaaaatatttactggaaaatggatgcgat ccaattacaggcaaagaactcaaagctgaagacttgattgaagttaaagtaccgccaatt gtgcgcccaaaaccaccaagtgcgaccagtattccggccgcattgaaaacaatgcaagac gaatgggacgctttaatgttacacacattttcgcaacgccaacaattgcaaaccgctcgt caagaattaagccatgcactatatcaacatgatgccgcttgtcgtgtcattgcacgtttg aacaaggaggtggcagctgcacgtgaagcattggctacattgaaaccacaagccggcatt tcatcatcggccgctgctggcggacaacaggcaatggatgttgatacaacatcatacaca acacaaccagtcgagcaaactggtatgacacccgaaatcattgaaaaattacaagaaaaa gccaccatattgaccgaagagcgtagaaaccgtggtcgtacattgcccaaagatctcgtt gttcccgaacaaattagaaacttcaaaattttggcatcgcatgcgggtcttcattcagcc agtgcacccggcattttggcacttgatgtgtgcagcttcaatgacaacaagattttgact ggtggaaatgacaaaaatgcaaccgttttcaataaagacacacaacaaattgtttcggtg cttaaaggtcacacgaaaaaagttaccaaagtcatttatcatcctgaaactcgagatgat gcagaaacagtcatcaccgcgtcaccagatcagacgattcgtatttggaatgttccaaca tcgcaaacgaaattcctattaagttgtcatactggtccggtcactggtctatcattgcat ccaaccggtgattatttgctatctacttcgtccgataaacattgggcattctctgatatt aaaaccggccgtttggttacaaaggtcatggatatgaatgaagttggtttgacagcagct caattccatccggatggtttgatttttggcaccggcaccgatgattcacaagtcaaaatt tgggacgttaaagagcagagcaacgttgccaatttccctggtcatactggaccaatttcg gcaatttcattctccgaaaatggttactatttggccacagccgccgatgatgcttgcgtt aaactttgggatttgcgtaaattgaaaaacattcgcaccattcaattggatgatggttat gaagtaaaagatttatgcttcgatcacagtggtacttatttggctatcgctggcacagac gttagaatttacttgtgcaaacaatggcaagaattatgtgtttttaatgatcacacatcg tcggcaactggcgttcgatttggtgcgaatgcagattatttggcatccacaagtatggat cgtactgttaaattttatggtttagacaaaaagtaa

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