Contarinia nasturtii (swede midge): 116347124
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Entry
116347124 CDS
T08003
Name
(RefSeq) CCR4-NOT transcription complex subunit 1
KO
K12604
CCR4-NOT transcription complex subunit 1
Organism
cns
Contarinia nasturtii (swede midge)
Pathway
cns03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
cns00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
116347124
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
cns03019
]
116347124
Messenger RNA biogenesis [BR:
cns03019
]
Eukaryotic type
mRNA surveillance and transport factors
mRNA cycle factors
P-body specific factors
116347124
mRNA degradation factors
3'-5' decay
Ccr4-NOT complex
116347124
BRITE hierarchy
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
Not1
CNOT1_CAF1_bind
NOT1_connector
ARM_Cnot1
CNOT1_TTP_bind
DUF3819
CNOT1_HEAT
CNOT1_1st
SPAN
TSA
Motif
Other DBs
NCBI-GeneID:
116347124
NCBI-ProteinID:
XP_031633440
LinkDB
All DBs
Position
Unknown
AA seq
2404 aa
AA seq
DB search
MNQEALSFTLTQINYLVSNLNKKNFEQNSRQIAALVKPFGLEADRHLLRCLFSSIDFSDA
NQTAKHSLQAKLLNQELNALLSKSSLITNICFSIDNCFAKQKTLKPTQNLLNQLFKSLTC
SPILEVVISLALTYSKVPEFVRLAESQLKICLPSLIQSYVEIDTARSNQEGSLNDISPEL
LQLILSLLSHDKYKKYGISELTHKKFVSQFSRDFPRERCPLILAPLIYSENTEITADKMS
ANSQGILTSAIMDTSWPNLVMDIGYAFTASTDECKNHLIKIGGRDLSAQDVAKIISLMCR
THKTLSDLSINLPNPSSFWSANNGNTQTTQESKDKNQNSTLTSSNEHTTWKPEVFVQALK
EHSPNLNWKDVCIGLDHSEFVIKDRAALVLLMTIIRLGMQSSGAGQHFPADTIYRSWTNT
EGQLSFISMILKNPDVYSFADHIFTSVSIELLKTPPETDNKEIAAWRSVHLVEVLLYIAE
KGYYAQVLEHFKVPMQHCPDILFMALLQISPPMTVLLQEMFQTLMPVFLGNHPNSGTILH
HAWNSTKFNNFSLRHIINHSMSDWYLRGDNDQSRLTRILDVAQDLKSLSSLLNVRSFQFV
IDLACLASRREYLKLDKWLTDKIREHGEQFVQSIVTFLQRRCPQITGAKIPDDQIPKAAQ
LPHETLTTILTCLQACVGSVQQDLADAIVQMSTNCTILMNKQRQQQQQQQQQQQQQAPPT
GVLRRGLESNLISSVAGSMFSGPTVDSISGLSSNLAGLNLSGPANGAFNFSTSLIGNLVS
TPASPSRLLQGQSNSPFQLPIVPLSGLPPVNNLGRIAQTPTGDKLNVTANNPSFPDITQK
ISKEVEDEANGYFQRIYNHSPHPTLSIDEVLDMLQRFKESTNEREREVQQCMVRNLFEEY
RFFPQYPEKELQITAQLFGGIIERNLVPSAQQLGLALRYVLEALRKPEGSKMYYFGITSL
DRFKNRLYLYQNYCEYLKQIPSFNEFPAHLTEYIKYGIKGIEPPNKPQSQVPLGQVMPTN
ASALYRSNSVTGNLATTPTTKATPIANAAAIAPRNLKSIANATNINTLLVATADREEKIT
LPPDAIQDKTAFIFNNLSQINMQAKCEELKEIMTKDYWPWLSQYMVLKRASIELNFHALY
SNFLDALKNPDIIRLVTKETFRNIRVLLRSDKGIENFSDRSLLKNLGHWLGMMTLGRNRP
ILHIDLDLKSLLAEAYHKGQQELLYVVPFVAKIVESCAKSKVFKPPNPWTMGIMNVLAEL
HQEQNLKLNLKFEIEVLCKTLSIDVADLKPAVYLKDPERLNTIEYQLSQPKKEELLQPRS
TPQQMAIPTSEAESTSAQMQPSTSPSQSGEQSTGPPEPRFNFTDITIGSMSNLAQHIVYS
PNITILHAHPQLKQIVRTAIERTISEWLTPVVDRSVRIAVNTCEQIMRKDFALDPDETRM
RKAAHYMVRNLTAGMAMITCRDQLNSVIQKNIISAFTTSMTPHPPELNELATQIANDNTE
LACAYIQKTAIEKAIPEIEKRLHSDFELRKIARQEGRRHCDSAVLNYQTARMPEQIRLKV
GGISSVQFSVYDEFARNIPGFQPMTERDAAALLLQKSTVPPQENVMPVAPFSDLTQTSHG
AMFNTNEIGFQFEELGSKMEAFLNSSINIPALQMHVTNMHALLDCLMTARRARDEMSAVS
LLNRAVENIMEGITHNTEHGELLKHYRDIHFRLLQWMQDSRAYGPMFTQRSITKCMIECR
EDIRYNMEAVELLISSNFANVSQYDYMLSQLMDNGNNFLAVGFAMQLVQHYFIDDRPNPL
ISENDFYNTIEMLARLAALHRAPEGLPHLIEMLRLANDPNSMAFDRANSGPTSHIHSGIL
QVRSNDFNDPAMADKVEYLLKDWATNYHMNAGGSRDASAMKSFSLFVNKLNLYGVLKTDE
LITRFFRQATQWCIDLVYRNLNDPSTSPQQNKTKIFHYIDSFVRLIALIVKYSGDNPNAT
TKINLLNKILGIIVGVLLQDQEQQGTSFQQLGYHRLFIMLFLELSAPELDSISLSVSTAF
CHTYHILRPSIAPAFCYSWLELISHRVFIGRILALTPQQKGWAMYSQLLLDLFRYLAPFL
RNAELAKPVQLLYKGTLRVLLVLLHDFPEFLCDFHFGFCDVIPSNCIQMRNLILAAFPRN
MRLPDPFTPNLKVDMLNEITTAPRIFTNYVANIQPTSFKKDLDAYLKARVPVTFLSELRS
HLQISNTAGSKYNVPLMNALVLYVGTQAIAHIRSKNLVPNMTTIVHCSHMDIFQNLIVDL
DHEGRYLFLNAVANQLRYPNSHTHYFSCTLLYLFVEANSEAIQEQITRVLLERLIVNRPH
PWGLLITFIELIKNPIYKFWDHDFVHCAPEIEKLFESVARSCMVVKAAAAAQQQNVEGEL
QECN
NT seq
7215 nt
NT seq
+upstream
nt +downstream
nt
atgaaccaggaagccttatcattcaccttaacgcagatcaattacttggtttctaacttg
aacaagaaaaattttgaacaaaattcacggcaaatcgctgcgctcgtcaaaccgttcgga
ttagaagcagatcgccatcttctgcgttgtttattttcatccattgattttagtgacgcc
aatcaaacggccaaacattcattgcaagcaaaattactcaatcaagagctgaacgcttta
ctcagcaaatcatcattaattacaaacatttgtttttccatcgataattgttttgccaaa
caaaaaacactaaagccaacgcaaaatttattgaatcaattgtttaaatcgttgacttgt
tcgccgattcttgaagtggttatttcgttggcactcacctattccaaagttcccgaattt
gtgcgcttagccgaaagccaattaaaaatctgcctaccatcattgattcaatcctatgtg
gaaatagatactgcccgttcaaatcaagaaggaagtcttaatgatatatcgcccgaatta
ttacagttaattttatcgttattatcgcacgataaatataagaaatacggtatatcggag
ttaacacataaaaaatttgtatctcaatttagtcgtgattttccgcgtgaacgttgtcca
ttgattttagcgccattgatttatagtgaaaataccgagatcaccgctgacaaaatgtca
gcaaattcccagggaattttaacatcggccattatggatacatcatggccaaatcttgtt
atggacattggctatgcatttacagccagtactgatgagtgtaaaaatcatttaataaaa
attggtggccgtgatttatctgcacaagatgtagctaaaataatatcgttaatgtgtcga
acacataaaacattatccgatttgagcataaatttaccgaatccaagttcattttggtcg
gcaaataatggtaatactcaaacaacccaagagtccaaagataaaaatcaaaattcaaca
ttgacatcaagcaatgagcatacgacatggaagcccgaagtatttgtccaagcattaaag
gaacattcgcccaatttgaattggaaagatgtgtgcatcggtttggatcatagtgagttt
gtgattaaagaccgtgccgccctagtgttattaatgacaattattcgattgggcatgcaa
tcaagtggtgccggtcaacatttccccgccgataccatttatcgttcatggacgaacacc
gaaggtcaattgtcattcatttcaatgatcttaaaaaatcccgacgtttattcatttgcc
gatcacatattcaccagtgtatcgattgaattgcttaaaacaccacccgaaactgataac
aaagagattgccgcatggagatcggtgcatttagttgaagtgctattgtatattgcggaa
aaaggctactatgcccaggtgttggaacattttaaagtgccaatgcaacattgtccggat
attttattcatggcattgttacaaatcagtccaccgatgacagtgctattgcaagagatg
ttccaaacattgatgccagtttttttgggcaatcatccgaattccggcaccattttgcat
cacgcatggaattcaacgaaatttaataatttctcattgcggcatataatcaatcattcg
atgagcgattggtatttgcgtggcgacaatgatcaatcacgtttaacgcgcattcttgat
gtggcccaagatttaaagtcactttccagcttattgaatgttcgttcatttcaatttgtc
attgatttggcgtgcttggcatcgcgacgcgaatatcttaagcttgataaatggctaacg
gataaaattcgtgaacatggcgaacaatttgttcaatcgattgtcacatttttacaacgt
cgttgtccacaaattaccggcgccaaaattcccgacgatcaaataccaaaagccgcacaa
ttgccacatgaaacgctcaccacaatactcacttgtttgcaagcatgtgttggcagtgtt
caacaggatttggccgatgcaattgttcaaatgtcaactaattgtaccattttgatgaac
aaacaacgacaacaacagcagcaacagcaacagcagcaacaacaacaggcaccacctacc
ggtgttttgcgtcgtggtttggaatccaatctcatctcatcggttgctggatccatgttc
agcggaccaacggttgattcaatctctggcctaagctcaaatttggccggtttgaatttg
agcggaccggcaaatggtgcatttaattttagcacaagtttaattggtaatttggtatcg
acaccagcatcaccatcacgattgctgcaaggccaatcgaatagtccattccaattgcca
atcgtgccattgagtggtttaccaccggtcaataatttaggtcgaattgcacaaacgcca
accggcgataaacttaatgtgaccgcaaataatcccagttttccggacattacacaaaaa
atatcgaaagaagttgaagatgaagccaatggatactttcaacggatttataatcattcg
ccgcatccaacgttgtcaattgatgaggtgctcgatatgctgcaacgatttaaagaatca
acaaatgaacgtgaacgtgaagtgcaacaatgtatggtacgaaatctgttcgaagaatat
cgtttctttccacaatatccggaaaaggagctacaaatcacagcacaactatttggcgga
attattgaacgcaatttggtgccatcggctcagcagcttggtctcgcactgcgatatgtt
ttggaagcactccggaagccagaaggatcaaaaatgtactattttggtattacgtcgttg
gatcgattcaaaaatcgtttatatttgtatcagaattattgcgaatatcttaagcaaatt
ccaagtttcaacgaatttcccgcacatctcaccgaatacattaagtacggcattaaaggc
attgaaccaccaaataaaccacaaagtcaagtgccattgggacaggtgatgcccacaaat
gcgtcggccttgtaccgcagtaattcggtgactggaaatttggcgacaacgccaacgaca
aaagcaacaccaatcgcaaatgcagcggctattgcaccgcgaaatctaaaatcaattgca
aatgcaacaaatatcaatacattgctcgtagcgacagccgatcgtgaagagaaaataaca
ctgccgccggatgccattcaagataagacggcatttatattcaataatttgagtcaaata
aatatgcaagcaaaatgcgaagagctgaaagagatcatgaccaaagactattggccatgg
ttgtcacagtacatggtattgaaacgtgcatcgatcgaattaaatttccatgcattatat
tcgaatttcttggatgcactaaaaaatcctgacatcattcgtttggtaaccaaagaaacg
tttcgcaatattcgtgttctattgcgttcggacaaaggaattgaaaacttttccgatcga
agcctattaaaaaatcttggccattggttaggtatgatgacattgggtcgaaatcgtccc
atccttcacattgatcttgacttaaaatcgttactcgccgaggcataccataagggtcaa
caggaactattgtatgtggtgccatttgtggcaaaaatcgttgaatcgtgcgcaaagagt
aaagtattcaaaccaccaaatccatggacaatgggcatcatgaatgtattggctgaattg
catcaggaacaaaatctaaagttaaatcttaaatttgaaatcgaagtattatgcaaaaca
ctgtcgatagatgtggccgacttgaaaccggccgtatatctaaaagatccggaacgatta
aatacaattgaatatcaattgtcacaaccaaagaaggaagaattgttgcaaccacgttcg
acgccacagcaaatggcaataccaacaagtgaagctgaatcgacttcggcacaaatgcaa
ccatcgacatcgccaagtcaaagcggtgaacaatcgaccggaccaccagagccgagattc
aatttcaccgacatcaccattggcagcatgtcgaatttggcacagcacattgtctattca
ccaaatattaccatactacacgctcatccacaattgaaacaaattgtacgaacagccatt
gaacgcacaatttccgaatggttgacaccggtcgttgatcgcagtgttcgcattgcggtc
aatacatgcgaacaaattatgcgaaaagatttcgcattggatccggacgaaacgcgaatg
agaaaagccgcacactatatggtacgaaatttaacagccggcatggcaatgataacatgc
agagatcaattgaatagtgttattcagaagaatattatatcggcattcaccacatcgatg
acaccgcatccacccgaattgaatgaattggccacacaaattgcaaacgataacaccgaa
ttggcgtgcgcatacatacagaagacggccattgagaaggcaattccggaaattgaaaaa
cgactacactctgactttgaacttagaaaaattgctcgtcaagaaggaagacgacattgt
gattcagccgtgcttaactatcaaacagctcgaatgccggagcaaattcgtttgaaagtt
ggtggcatttcaagcgttcaattctcagtttacgatgaattcgctcgaaatatacctgga
ttccagccgatgaccgaacgtgatgcagctgcattacttttacagaaatccactgtacca
ccgcaggaaaatgtaatgcccgttgcaccattctccgatttgacgcaaacatcgcacggt
gcaatgttcaatacaaacgaaattggtttccaattcgaagagttgggcagtaaaatggaa
gcatttttgaatagttccataaatataccggcacttcaaatgcacgtaacaaatatgcac
gcattgctcgattgtttgatgacagcaagacgtgcccgtgacgaaatgagtgcggtcagc
ctattgaatcgtgccgttgaaaatataatggaaggaattacccacaacactgaacacggt
gaattgcttaagcactatcgcgacattcatttccgattgttgcaatggatgcaagacagc
cgagcatatggcccaatgtttacacaacgttcaataaccaaatgtatgattgaatgtcgc
gaagatattcgttacaatatggaagcggttgagttgttgatttcatcaaactttgccaat
gtatcacaatatgattacatgctcagccaattgatggacaatggaaataactttttggcc
gttggctttgcaatgcaattggtgcaacattatttcatcgacgatcgtccaaatccattg
attagcgaaaatgatttctacaatacgattgaaatgttggccagattggcggcattgcat
cgagcaccagagggactaccgcacttgattgaaatgctacgacttgctaacgatcccaat
tcaatggcctttgatcgtgccaattctggacccacgtcacacattcattcgggcatctta
caagtgcgatcgaatgacttcaacgatccggccatggccgacaaagtggagtatctattg
aaagattgggccaccaattatcacatgaatgcgggcggcagccgtgatgccagcgccatg
aaatcattcagtttgtttgtgaacaaattgaatttgtatggtgtactcaaaaccgacgaa
ttgatcacacgcttctttagacaggcgacacaatggtgcatcgatttggtttatcgtaat
ttaaacgatccatcaacatcgccacaacaaaataagacgaaaattttccactacattgat
tcgtttgttcgtttgattgcattgattgttaaatattcgggcgataatccgaatgcaacg
accaaaataaatttgctcaataaaattttgggcataattgtcggtgtattgttgcaagat
caagagcaacaaggtacatcattccagcaacttggctatcatcgtctttttattatgctc
tttttggaattaagcgcacccgaattggattcaatcagtttgagcgtatcgaccgcattc
tgtcacacatatcacattctacgaccatcaattgcgccagcattttgctattcatggctt
gagctcatttcgcatcgtgtatttattggtcggattttggcattgacaccacaacaaaaa
ggatgggccatgtactcgcaactgttgttggatctcttccgttatttggcgccattcttg
cgcaatgccgaattggccaaacccgttcaattgttgtacaaaggaacattacgcgtgttg
cttgtgttgttgcatgattttcctgaatttttatgcgacttccatttcggattctgtgat
gtgatcccatcgaattgtattcaaatgcgaaatctgattttggcagcatttccacgtaat
atgcgactaccggatccattcacgccaaatcttaaagttgatatgctgaacgaaatcaca
accgcacccagaatattcacaaactatgtggccaacattcaaccgacatcattcaaaaaa
gatttggacgcatacttgaaagcacgtgtgccggttacatttttgtccgaactacgtagc
catttgcagatatcaaatacagccggttcaaagtataacgtcccactgatgaacgctttg
gtactatatgttggaacacaagccattgcccacatacgttcaaagaatctcgtaccaaac
atgacaaccattgttcattgttcgcacatggacattttccaaaatctaattgttgatttg
gatcacgagggacgctatctattcttgaacgctgttgcaaatcaattgcgttatcccaac
agtcatacacactacttcagctgtacattgctctatctctttgttgaggcaaactctgaa
gcaatccaggaacaaatcacacgtgttctactggaacgtttgatcgttaatcggccacat
ccatggggtctattgatcacattcattgaattgatcaagaatccaatttacaaattctgg
gaccatgatttcgtacattgtgcaccagaaattgaaaagctatttgagtcggtggctcgt
tcgtgtatggtggtcaaagcagctgcagcagcccaacaacaaaatgtcgaaggagaatta
caagaatgcaactga
DBGET
integrated database retrieval system
