Cobetia sp. cqz5-12: F8A90_16760
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Entry
F8A90_16760 CDS
T10568
Symbol
rpoB
Name
(GenBank) DNA-directed RNA polymerase subunit beta
KO
K03043
DNA-directed RNA polymerase subunit beta [EC:
2.7.7.6
]
Organism
cobc Cobetia sp. cqz5-12
Pathway
cobc03020
RNA polymerase
Brite
KEGG Orthology (KO) [BR:
cobc00001
]
09120 Genetic Information Processing
09121 Transcription
03020 RNA polymerase
F8A90_16760 (rpoB)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
cobc03021
]
F8A90_16760 (rpoB)
03400 DNA repair and recombination proteins [BR:
cobc03400
]
F8A90_16760 (rpoB)
Enzymes [BR:
cobc01000
]
2. Transferases
2.7 Transferring phosphorus-containing groups
2.7.7 Nucleotidyltransferases
2.7.7.6 DNA-directed RNA polymerase
F8A90_16760 (rpoB)
Transcription machinery [BR:
cobc03021
]
Prokaryotic type
Bacterial type
RNA polymerase
Core subunits
F8A90_16760 (rpoB)
DNA repair and recombination proteins [BR:
cobc03400
]
Prokaryotic type
SSBR (single strand breaks repair)
NER (nucleotide excision repair)
TCR (transcription coupled repair) factors
DNA-directed RNA polymerase complex (RNAP)
F8A90_16760 (rpoB)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RNA_pol_Rpb2_6
RNA_pol_Rpb2_1
RNA_pol_Rpb2_3
RNA_pol_Rpb2_7
RNA_pol_Rpb2_2
RNA_pol_Rpb2_45
Motif
Other DBs
NCBI-ProteinID:
QQK65575
LinkDB
All DBs
Position
complement(4028761..4032837)
Genome browser
AA seq
1358 aa
AA seq
DB search
MAYSYTEKKRIRKDFGKLPQVMDVPYLLAIQLDSYHDFLQQDRAPEQRLEVGLHAAFKSV
FPIASFSGNAALEYVSYRFGTPAFDVKECQLRGVTYSAPLRVKVRLMIYDKESSNKAIKD
IKEQEVYMGEIPLMTENGTFVINGTERVIVSQLHRSPGVFFDHDKGKSHSSGKLLYSARV
IPYRGSWLDFEFDPKDNVYVRIDRRRKLPASVLLRAMGMTSEEILGTFFDTTMYHIERSG
FSVELVPARLRGETAAFDIKDADGSVIVEEGRRITQKHVRQMEASGLERLEVPMDYLYGK
VLAKDQIDPATGELVCESNSEITPELLEKMAQAKITQFEVIYTNDLDCGPFVSDTLKLDT
TRNQLEALVEIYRMMRPGEPPTKDAAESLFQNLFFSEDRYDLSGVGRMKFNRRLRRESDT
GSGVLDQDDILTVMKELISIRNGNGDVDDIDHLGNRRIRSVGEMAENQFRVGLVRVERAV
KERLSMAESEGLMPQDLINAKPVAAAVKEFFGSSQLSQFMDQNNPLSEVTHKRRVSALGP
GGLTRERAGFEVRDVHATHYGRLCPIETPEGPNIGLINSLATYSKTNSYGFLETPYRKVV
DCQVTDDVVDLSAIEEGDFIIAQASATVDENGRLVDDLVQVRHRGETTFMAPEKVTMMDV
SPRQVVSVAAALIPFLEHDDANRALMGANMQRQAVPTLKADKPLVGTGMERFVARDSGVC
AVARRGGVIDSVDAKRIVVRVREEEIIGGEAGVDIYNLTKYVRSNQNTCQNQRPIVRPGD
EVAIGDILADGPSVDMGDLALGQNMRLAFMPWNGFNFEDSILFSERVVQEDRFTTIHIQE
LTCVARDTKLGPEEITSDIPNVGESALSKLDESGVVYIGAELNPGDILVGKVTPKGETQL
TPEEKLLRAIFGEKASDVKDTSLRAPTGMKATVIDVQVFTRDGVEKDQRALSIEQMQLAE
VRKDLQETYRIAEEATFERMQRNLVGQAVNGGPKLKKGDVLTDDYLEALPRQEWFKLRLQ
DESLNELLAQADEQLEIRRREMDERFEDKKRKLTQGDDLAPGVLKIVKVYVAVKRRIQPG
DKMAGRHGNKGVISAIMPVEDMPFDGNGESVDVVLNPLGVPSRMNVGQILETHLGMAARG
LGVKIEHMLREERAEQVKQIREFLDKVYNTVGGRQEDLSVLSDDEIITMAHNLKKGVPMA
TPVFDGAKEHEIKQLLTLAGIPDSGQMDLYDGRTGEKFDRKVTVGYMYMLKLNHLVDDKM
HARSTGSYSLVTQQPLGGKAQFGGQRFGEMEVWALEAYGAAYTLQEMLTVKSDDVEGRTK
MYKSIVDGDHTMQAGMPESFNVLVKEIRSLGIDMELEG
NT seq
4077 nt
NT seq
+upstream
nt +downstream
nt
atggcttactcatacactgagaaaaaacgcatccgcaaggattttggcaaactgccccaa
gtgatggatgtgccttacctgctggccatccagcttgattcctaccacgactttctccag
caggacagggcgccagaacagcgcctggaagtcggccttcacgctgccttcaagtccgtg
ttcccgattgccagcttctctggcaacgcagcgctcgagtatgtcagctaccgcttcggt
acgccggcgttcgacgtcaaggaatgtcagctgcgcggagtcacttactctgcaccgctg
cgcgtgaaagtgcgcctgatgatctatgacaaggaatcgtcgaacaaggcgatcaaggac
atcaaggagcaggaagtctacatgggggaaatccccctgatgacagagaacggtaccttc
gtcatcaatggtaccgaacgtgtcatcgtgtcacagctgcatcgctcaccgggtgtgttc
ttcgaccacgacaagggcaagagccactcgtccggcaagctgctgtactccgcacgtgtg
attccttaccgcggttcctggttggacttcgagtttgatccgaaggacaacgtctacgtc
cgtatcgaccgtcgtcgcaagctgccggcttccgttctgctgcgtgccatgggcatgacc
agcgaagagattctcggtacgttcttcgacaccacgatgtaccacatcgagcgcagcggc
ttctccgttgagctggtgccggcacgtctgcgtggcgagaccgccgccttcgacatcaag
gatgccgacggtagcgtgatcgtggaggaaggtcgtcgtattacacagaagcacgtccgt
cagatggaagcctccggcctcgagcgtctcgaagtgccgatggactacctgtacggcaag
gtgctggccaaggatcagatcgatccggccactggtgagctggtctgcgaaagcaacagc
gagatcactccggaactgctggagaagatggctcaggccaagatcacccagttcgaagtc
atctacaccaacgacctggattgcggtccgttcgtgtccgataccctgaagctggatacc
acgcgtaaccagctcgaggcattggtcgagatctaccgcatgatgcgtccgggcgagccg
cccaccaaggatgcggcagagtcactgttccagaacctgttcttcagcgaagaccgctac
gacctgtcgggcgtgggccgcatgaagttcaaccgtcgcctgcgtcgcgaaagcgatacc
ggcagcggcgtgctcgatcaggacgatatcctgaccgtcatgaaggagctgatcagcatc
cgtaacggcaatggcgatgtcgatgacatcgaccacctgggcaaccgtcgtattcgctct
gtgggcgaaatggcggaaaaccagttccgtgtcggtctggtccgcgtcgagcgtgcggtc
aaggagcgtctctccatggccgagagcgaaggcctgatgccgcaggatctcatcaacgcc
aagccggttgcggcagcggtgaaggaattcttcggttccagccagctctcccagttcatg
gatcagaacaacccgctgtccgaagtgacgcacaagcgccgtgtctccgcgcttggcccg
ggtggtctgacccgtgagcgcgccggcttcgaagttcgtgacgttcacgccacgcactac
ggccgtctgtgcccgatcgagacgccggaaggcccgaacatcggtctgatcaactcgctg
gcgacctactccaagaccaacagctatggcttcctcgagacgccgtaccgcaaggtcgtg
gattgtcaggtcaccgacgatgtcgtcgatctgtccgcgatcgaggaaggcgatttcatc
atcgcccaggcctccgcgaccgtcgacgagaacggccgtctggtcgacgacctggttcag
gttcgtcaccgtggcgagaccaccttcatggcgccggaaaaggtcaccatgatggacgtg
tctccgcgtcaggtcgtttctgtcgctgccgcactgatcccgttcctcgagcacgatgat
gccaaccgcgccttgatgggtgcgaacatgcagcgtcaggccgttccgactctgaaggct
gacaagccgctggtcggtaccggcatggagcgcttcgtggcgcgtgactccggcgtctgc
gccgtggcacgtcgtggcggtgtcatcgattccgtcgatgccaagcgcatcgtcgtacgt
gttcgggaagaagagatcatcggcggtgaagccggcgttgatatctacaacctgaccaag
tacgtgcgttcgaaccagaacacctgtcagaaccagcgcccgatcgtgcgtcctggcgac
gaagtcgccatcggcgacatcctggccgacggcccgtccgtcgacatgggtgatctggcc
ctgggtcagaacatgcgtctggcgttcatgccctggaacggcttcaacttcgaggattcc
atcctgttctcggagcgtgtggtgcaggaagatcgcttcaccaccatccacatccaggaa
ctgacctgtgtcgcgcgtgacaccaagctcgggccggaagaaatcacttccgatatcccg
aatgtcggcgaatccgcactctccaagctggatgagtccggtgtcgtctacatcggtgcc
gagctgaacccgggcgacatcctggtcggcaaggtcacgccgaagggcgagacccagctg
acgccggaagagaagctgctgcgtgccatcttcggcgagaaggcgtccgacgtgaaggac
acctctctgcgtgccccgactggcatgaaggccaccgtcatcgacgttcaggtcttcacc
cgtgacggcgtcgagaaggatcagcgtgcgctctccatcgagcagatgcagctggccgag
gtccgcaaggatctgcaggaaacctaccgcatcgcggaagaggcgaccttcgagcgtatg
cagcgcaacctggtcggtcaggccgtcaacggtggtccgaagctcaagaagggcgacgtg
ctgaccgatgactacctggaagcactgccgcgccaggagtggttcaagctgcgtctgcag
gatgagtctctcaatgaactgctggcccaggccgatgagcagctcgagatccgtcgtcgc
gagatggacgagcgcttcgaagacaagaagcgcaagctcacccagggtgatgatctggca
ccgggcgtgctcaagatcgtcaaggtctacgttgccgtgaagcgtcgtatccagccgggc
gacaagatggccggtcgtcacggtaacaagggtgtcatctccgcgatcatgccggtggaa
gacatgccgttcgatggcaatggcgagtcggttgacgtcgtgctgaacccgctgggtgtt
ccgtcgcgcatgaacgtcggtcagatcctcgagacccacctcggcatggccgcgcgtggt
ctgggcgtgaagatcgaacacatgctgcgcgaagagcgtgccgagcaggtcaagcagatc
cgcgaattcctcgacaaggtgtacaacaccgtcggcggtcgccaggaagacctctccgtg
ctcagcgatgatgaaatcatcaccatggcgcacaacctgaagaagggcgtgccgatggca
acgccggtcttcgatggcgccaaggaacacgagatcaagcagttgctcacgctggccggt
atccctgattccggacagatggacctctacgatggccgcaccggcgagaagttcgatcgc
aaggtgaccgtcggttacatgtacatgctcaagctcaaccacctggtggatgacaagatg
catgcgcgttcgaccggctcctactccctcgtcacgcagcagccgctgggtggtaaggcg
cagtttggtggtcagcgcttcggtgagatggaggtctgggccctcgaggcgtacggcgct
gcctacaccctccaggagatgctcacggtcaagtccgatgacgtggaaggccgtaccaag
atgtacaagagcatcgtagatggcgatcacaccatgcaggcgggcatgcccgaatccttc
aacgtgctggtgaaggaaatccgctcgctgggtatcgacatggagctggaaggctga
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integrated database retrieval system
