Cardiocondyla obscurior: 139106891
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Entry
139106891 CDS
T10704
Name
(RefSeq) tetratricopeptide repeat protein 37
KO
K12600
superkiller protein 3
Organism
cobs Cardiocondyla obscurior
Pathway
cobs03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
cobs00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
139106891
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
cobs03019
]
139106891
Messenger RNA biogenesis [BR:
cobs03019
]
Eukaryotic type
mRNA degradation factors
3'-5' decay
Ski complex
139106891
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
TPR_16
TPR_2
TPR_19
TPR_14
TPR_1
TPR_8
TPR_CcmH_CycH
TPR_17
TPR_12
TPR_11
ANAPC3
TPR_9
TPR_7
ARM_TT21_C
ChAPs
TPR_21
TPR_20
DUF7017
Alkyl_sulf_dimr
BTAD
TPR_10
TPR-S
TPR_15
TPR_Slam
ARM_TT21
HrpB1_HrpK
DUF5588
Motif
Other DBs
NCBI-GeneID:
139106891
NCBI-ProteinID:
XP_070520048
LinkDB
All DBs
Position
LG12:complement(2704314..2709756)
Genome browser
AA seq
1297 aa
AA seq
DB search
MSDDVKILLKEARESFKQNEYLDVMKKCKKVLKKDKSNYMALVLLARSMQELEEFELQVP
LVLQKAVEVQPNNPLAWQGLVAYYEKGPQSNENWEKLALGYCKLLQLDSDSTKFMHFVDK
ISEIVLRIKNDDILSEALNTLSTLREGSTKEKINLIDKTLVWVLSEYPNNRITKYQELYE
NVLASVIKDVELVNRQEYYRKYLKILYDLNKFSTLLAAAQDMHIQFPQDACPLEWLCHIY
YEKAALCEDKPKIDIPEFYEILFKLNTNSETALIAKAAYLKEENELIDSRECLKQAVLLN
TQSFYAWLMLSQVYFKLYCWEETENASRKALQSIKPSLKDKFQHEIKLRLLEATSRSSNK
QKLIEAREMCEELLSIEPSLQLQVIHARINVLLNEPDITATLNDLESREETKLQALILKA
LHLKKNKQYEEAINALELALENSEAWSLFGKIYWDMGDYNHSLMAFLNAVQADRNNWECM
VYLGHYYREHNCDIERSRKCYQAALQINPNSEEAGVGLSTAYRLLKNTDANIQLLQKITT
QSTGPRWAWLQLGLHYLDQCDAGQAITALQHVIRADPNDNHSWESLADAYLQRGAHTSAL
RSYQRALQLSPESLYPMIQLANIKLLIGQYKEAKEDFENILQNNEQHILALKGLGQACLG
LAKENIAKQFLCRARENLQQAVDSLVDVIMIRSDLVCNWKLLGDVCYRIITLPEKYCYLR
VKSVLMKYDDVEKYINIKGDEILLLSIRCFCRAISIQDSASLWHDLVCCYLMQLNRDSTV
SKNDVAIKCYAAAKHTVKLDPQSWLNWNILGVICMSVYVKNYALAQHCFVMAIDKESNNA
IAWSNLGTLYLHLGDIYKANEAFSRAQRADPSYVNSWIGQGLIAEKTLRKEAMDLFWHST
QLGYHNQSALGYAHWVLTTLLNPAMTEDPLSIYFIENMYAIPAAADVLTWYTEREPHDIY
ALNTHGLLLERLKLYNTATNQFSTALKLSEDEERDKISINLARILIQTGKYEEAVALCKQ
VKCANFNSQCHLALSLFKAKQYEESYNTYEAALHWLADTSADKANILCAMAAIAYMFQGA
NAVKTLLFQCIQIEPPIVTGFLATAALGILHNDDNLTSLVLNELKSYENHHEYGYHVITL
SAYNQVIHGNFTEAIRILTKAIFRHPSDVRYWVRLVRILMLDNNLCTFRKCALSALTISR
NKNTSMTDIVYVACASAYSHLGTKEGLRQAQKNIFTYPNNVESWANLVAVLLNREQDCIS
IKSQWISSLISVIKSRFQTSQNMLQWLSRNENKLDNL
NT seq
3894 nt
NT seq
+upstream
nt +downstream
nt
atgtcggacgacgtaaagattttgctgaaggaagcccgtgagtccttcaaacaaaatgag
tatctggatgttatgaaaaaatgcaagaaggttttgaagaaggataaaagcaattatatg
gcattggttctcttagctcgttctatgcaagagctggaggaatttgaattacaagttccc
ttggttcttcaaaaagctgtggaggtgcaaccaaataatccattagcttggcaaggattg
gtagcatattatgagaaaggtccacagagtaatgagaactgggaaaagttggctctaggg
tattgcaaactattacagttagatagtgattctactaaatttatgcattttgtggataag
atttctgagattgttttacgtataaaaaatgatgacatactgtctgaagcactgaacaca
ttgagtacattaagagagggttccaccaaagaaaagataaatcttattgataagactctt
gtgtgggttttatcagaatatcctaataatagaattactaagtatcaagagctgtacgaa
aatgtattagcatctgtaataaaagatgttgaactagtgaatagacaagaatattacaga
aaatatttaaaaatactgtatgatttaaataaattttcaacattgctagctgcagcacaa
gacatgcatattcaatttccacaggatgcttgtcctttagaatggctgtgccatatttat
tacgaaaaggctgctttgtgtgaagacaaaccaaaaatcgacatacctgagttttatgag
atacttttcaagctaaatacaaattccgagactgcattaattgcgaaagcggcatacttg
aaagaagaaaatgagttaattgattcgcgcgaatgtttgaagcaagcagttttattaaat
acacaatcgttttacgcttggttaatgttaagccaagtatattttaagctttactgctgg
gaagagaccgagaatgcttccagaaaagcgctacaatcaataaaaccatctttaaaagat
aaatttcaacatgaaatcaaattaagactgctcgaagcaacaagtagaagtagcaataaa
caaaaattgatagaagcgcgtgaaatgtgtgaagagctattaagtattgagccttccttg
caattacaagtgatacatgcgcgtataaatgtattactgaatgaaccggatattactgct
acattaaatgacttggaatctcgagaagaaactaagctccaagctcttattcttaaagct
ttgcatttaaaaaagaataaacaatatgaggaagctattaacgctcttgagttagcttta
gaaaattctgaagcttggtcattgtttggaaaaatatattgggatatgggagactacaat
cacagtttgatggcatttttaaatgccgtgcaagcagatcgcaataattgggaatgcatg
gtttatttaggacactattatcgcgaacataactgtgatattgagcgttcaagaaagtgt
taccaggctgcgttgcaaatcaacccgaattccgaagaagctggtgtcggactaagtaca
gcttatcgtcttctcaagaatactgacgccaatattcaacttttacaaaaaataactaca
caaagtactgggccaagatgggcttggctccaattgggtttacattatttggatcaatgt
gacgcgggtcaagctattacggcattacagcatgtgattagagccgatcccaatgacaat
cacagctgggaatctttagcggatgcatatttacaacgtggcgcccacacatcggcatta
agatcgtatcaacgcgcactacagctgagcccagaatccttatatcctatgatacaactc
gcgaatattaaactgcttattggtcaatataaagaagccaaagaagactttgagaacata
ttgcagaataatgaacagcatattcttgcattaaaaggtctagggcaagcatgtttaggt
ttggcaaaggaaaatattgcaaaacaattcctatgtcgcgcaagagaaaatctgcaacaa
gcagtagacagtctggtagatgttattatgatacgtagtgatctagtttgcaattggaaa
ttgctaggcgatgtgtgctatagaataatcactttaccagaaaaatattgctacttaagg
gtcaaatcagttttaatgaaatatgacgatgtcgaaaaatatataaatattaaaggagac
gaaatactcttgttatcaataagatgtttttgtcgagcgatatccatacaagattctgcg
tcgttatggcacgatttagtatgctgttatttgatgcaactaaatcgcgattctacggtc
agtaagaacgatgtggcaattaagtgctacgcggctgcaaaacacactgttaaacttgat
ccacaatcgtggctaaattggaatattttgggcgttatttgtatgtcagtatatgtaaaa
aattatgctttggctcaacattgtttcgttatggcgatcgataaagaatcgaacaatgca
atagcttggagcaatttagggacattatacttacatttaggagatatctataaagcgaat
gaagcattttctcgagcacaacgcgcggatcctagttatgtgaatagctggataggacaa
ggattaatagcagagaagaccttgaggaaggaagcgatggatttattctggcattcgaca
caactgggttatcacaatcaatcggctttaggctatgctcattgggtacttaccactctc
ctgaatcctgcaatgaccgaagatccactgtcaatttacttcatcgaaaatatgtatgcg
atacctgcagccgccgatgttctcacttggtatactgaacgtgaaccacatgatatttat
gccctaaatactcacggtttattactggaacgattaaaactgtacaatacggcgactaac
caattttctacagctttaaaattgagtgaggatgaagaaagagataaaatatctatcaac
ttagcacgtatactaattcaaactggaaaatatgaagaagcggtagcattgtgcaaacaa
gtaaaatgtgcaaattttaactctcaatgccatttagcattatccttattcaaagccaag
cagtacgaagaatcgtataacacatatgaagcagctttacattggctagcggacactagt
gcggacaaagccaatatcttgtgtgcgatggccgcgatcgcttatatgttccaaggggca
aatgctgtcaaaactctgctattccagtgcatacaaatagaaccgcctattgtaacaggt
ttcctagcgactgctgcattaggcattttacataacgacgataatttaacttccttagta
ctcaacgaattaaaatcatacgaaaatcatcatgaatatggttaccacgttattacattg
tcagcatataatcaagttattcacggaaatttcaccgaagctattagaatactcaccaaa
gctattttcagacatcctagtgacgttagatattgggttcgtctagttcgaattttaatg
ttggataacaatttatgtaccttccgtaaatgtgctctatcagcgttgacgataagcaga
aacaaaaatacatccatgactgatatcgtatatgttgcttgtgcatcagcgtacagtcac
ctcggcacaaaggagggtctccgacaagctcaaaaaaatatctttacgtatcccaacaat
gttgaaagttgggcgaatctcgttgcagttcttttgaatagagaacaggattgcatttca
attaaaagtcagtggatatcgtcactaatatcggtaataaaatcacgatttcaaacttct
caaaatatgttgcaatggttgtctcgtaacgaaaacaaacttgataatctgtaa
DBGET
integrated database retrieval system
