Corynebacterium pseudotuberculosis 1/06-A: Cp106_0314
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Entry
Cp106_0314 CDS
T02052
Symbol
rpoB
Name
(GenBank) DNA-directed RNA polymerase subunit beta
KO
K03043
DNA-directed RNA polymerase subunit beta [EC:
2.7.7.6
]
Organism
cod
Corynebacterium pseudotuberculosis 1/06-A
Pathway
cod03020
RNA polymerase
Brite
KEGG Orthology (KO) [BR:
cod00001
]
09120 Genetic Information Processing
09121 Transcription
03020 RNA polymerase
Cp106_0314 (rpoB)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
cod03021
]
Cp106_0314 (rpoB)
03400 DNA repair and recombination proteins [BR:
cod03400
]
Cp106_0314 (rpoB)
Enzymes [BR:
cod01000
]
2. Transferases
2.7 Transferring phosphorus-containing groups
2.7.7 Nucleotidyltransferases
2.7.7.6 DNA-directed RNA polymerase
Cp106_0314 (rpoB)
Transcription machinery [BR:
cod03021
]
Prokaryotic type
Bacterial type
RNA polymerase
Core subunits
Cp106_0314 (rpoB)
DNA repair and recombination proteins [BR:
cod03400
]
Prokaryotic type
SSBR (single strand breaks repair)
NER (nucleotide excision repair)
TCR (transcription coupled repair) factors
DNA-directed RNA polymerase complex (RNAP)
Cp106_0314 (rpoB)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RNA_pol_Rpb2_6
RNA_pol_Rpb2_7
RNA_pol_Rpb2_3
RNA_pol_Rpb2_2
RNA_pol_Rpb2_45
RNA_pol_Rpb2_1
Motif
Other DBs
NCBI-ProteinID:
AER68418
LinkDB
All DBs
Position
328216..331716
Genome browser
AA seq
1166 aa
AA seq
DB search
MLEGPILAVSRQTKSVADIPGAPERFSFAKITEPIEVPGLLDIQLDSFAWLIGTPEWRAR
QQEELGESVRITSGLEEILEELSPIQDYSGNMSLSLSEPRFEDMKNTIDECKDKDINYSA
PLYVTAEFINNETQEIKSQTVFIGDFPMMTDKGTFIVNGTERVVVSQLVRSPGVYFDQTI
DKSTERPLHSVKVIPSRGAWLEFDVDKRDTVGVRIDRKRRQPVTVLLKALGWTTEQITER
FGFSEIMMSTLESDGVANTDEALLEIYRKQRPGEQPTRDLAQSLLDNAFFRAKRYDLAKV
GRYKVNRKLGLGGDNEGLMTLTEQDIATTLEYLVRLHAGESTMVAPNGDVIPVDTDDIDH
FGNRRLRTVGELIQNQVRVGLSRMERVVRERMTTQDAESITPTSLINVRPVSAAIREFFG
TSQLSQFMDQNNSLSGLTHKRRLSALGPGGLSRERAGIEVRDVHASHYGRMCPIETPEGP
NIGLIGSLASYARVNSFGFIETPYRKVENGVLTDQIDYLTADEEDRFVVGQAHVEVDAQG
KITADSVTVRVKNGDIQVVAPESVDYLDVSPRQMVSVATAMIPFLEHDDANRALMGANMQ
RQAVPLVRSEAPFVGTGMERRAAYDAGDLIINKKAGAVENVSADFITVMADDGTRETYML
RKFERTNQGTCYNQIPLVNLGDRVEAGQVLADGPGTHNGEMSLGRNLLVAFMPWEGHNYE
DAIILNQRVVEEDILTSIHIEEHEIDARDTKLGAEEITREIPNVSEDVLKDLDERGIVRI
GADVRDGDILVGKVTPKGETELTPEERLLRAIFGEKAREVRDTSMKVPHGETGKVIGVRR
FSREDDDDLAPGVNEMIRVYVAQKRKIQDGDKLAGRHGNKGVVGKILPQEDMPFMPDGTP
VDIILNTHGVPRRMNIGQVLEVHLGWLAAAGWKIDPEDPANVELLKTLPEDLYDVPAGSL
TATPVFDGATNEEVAGLLANSRPNRDGDVMVDANGKAQLFDGRSGEPFPYPVSVGYMYML
KLHHLVDEKIHARSTGPYSMITQQPLGGKAQFGGQRFGEMEVWAMQAYGAAYTLQELLTI
KSDDVVGRVKVYEAIVKGENIPDPGIPESFKVLLKELQSLCLNVEVLSADGTPMELSGSD
DDEFDQAGASLGINLSRDERSDADIA
NT seq
3501 nt
NT seq
+upstream
nt +downstream
nt
gtgctggaaggacccatcttggcagtctcccgccagaccaagtcagtggccgacatcccc
ggggctcccgaacgtttttcgttcgccaaaattacggaacctattgaggtcccgggactt
cttgatattcagctagattccttcgcatggctcattggtacgcccgagtggcgtgctcgt
cagcaggaggagctaggtgaaagcgtccgcataaccagcggactggaagaaatcttggag
gagctatctccgattcaggattattccggaaacatgtcattgtctctctcggagccccgc
ttcgaggacatgaagaacactatcgatgagtgtaaagacaaagacattaactattctgcg
ccgctttatgtgactgcagaatttatcaataatgaaactcaggagatcaagtcccagact
gtcttcatcggcgatttcccgatgatgaccgacaagggaaccttcatcgttaacggcact
gagcgtgtcgtggtctcccagcttgttcgttcgcctggcgtttacttcgaccagacgatt
gataagtccaccgagcgtccgctgcactctgtgaaggtgatcccttctcgcggtgcgtgg
ttggaatttgacgtggataagcgcgacaccgttggtgtccgtattgaccgcaaacgtcgc
cagccggtgaccgttcttctcaaggctcttggttggaccactgagcagatcacggagcgc
tttggtttctccgaaattatgatgtccacgcttgagtcggacggtgtggctaacaccgat
gaggctctgctggagatctaccgcaaacagcgtccgggtgagcagccgactcgtgacctc
gcgcagtcgctgctggataacgccttcttccgcgcgaagcgttacgaccttgccaaggtt
ggacgctacaaagtgaaccgcaaactcggtctcggtggggacaacgagggtctgatgact
ctcactgagcaggacatcgcaaccactctcgagtacctcgtgcgtctccacgctggtgag
agcactatggttgcacccaatggtgatgttatccctgtggatacggatgacattgaccac
tttggtaaccgtcgtctccgtacagtcggagaactgattcagaaccaagtccgcgtgggt
ctgtcccgcatggagcgcgtggttcgtgagcgcatgactacccaggacgcagagtctatt
actcctacctccttgatcaacgtgcgcccggtttctgctgccatccgcgagttctttggt
acctcccagctctcgcagttcatggatcagaacaactccttgtctggcctcacacacaag
cgccgtctctctgctctgggcccaggcggcctgtcgcgtgagcgcgctggcattgaggtt
cgagacgttcacgcttctcactatggtcgtatgtgcccgattgagactcccgaaggtccg
aacattggtttgatcggttccttggcttcctatgctcgggtaaactctttcggcttcatc
gagaccccctaccgcaaggtggaaaacggtgttctcaccgatcagatcgattacctcacc
gcagatgaggaagatcgttttgtggttggtcaggctcacgtcgaggtagacgcacagggc
aagatcaccgcagatagcgttactgttcgtgtgaaaaatggtgacatccaggtcgtggca
ccggaaagcgttgattacctagacgtttccccacgccagatggtctctgtggctaccgcc
atgattccgttccttgagcacgacgacgctaaccgtgccctcatgggcgcgaacatgcag
cgtcaggctgtgccgctggttcgttcagaagccccgtttgtgggaactggcatggagcgt
cgtgctgcttatgacgccggcgacctcattatcaacaaaaaggctggcgctgtagagaac
gtctccgctgatttcatcaccgtgatggctgatgacggcacccgtgagacctacatgctg
cgcaagtttgagcgcaccaaccagggcacctgctataaccagatcccattggtgaacttg
ggcgaccgcgttgaggccggacaggttctcgcagatggccccggtactcacaacggtgag
atgtcgctcggccgcaaccttcttgttgcgttcatgccatgggaaggccacaactacgag
gacgctatcatcctcaaccagcgtgttgtggaagaggacattcttacttcgatccacatc
gaggaacacgagattgatgcccgagacaccaaacttggtgcggaggagatcactcgtgag
attcccaatgtgtccgaggatgtgctcaaggatctcgatgagcgcggcatcgttcgcatc
ggtgctgatgtccgcgacggcgatatcttggtgggtaaggtcactcctaagggtgagacc
gagctgacccctgaagagcgcctgctgcgtgcaatctttggtgagaaggcacgtgaggtt
cgcgatacctctatgaaggtgcctcacggcgagaccggtaaggtcatcggcgttcgtcgt
ttctcccgtgaagacgatgatgatctcgcgcctggcgttaatgagatgattcgtgtctat
gttgcccagaagcgcaagatccaggacggcgataagcttgctggtcgccacggtaacaag
ggtgtcgttggcaagatccttccgcaggaagacatgccattcatgcccgacggtaccccg
gttgacatcatcctgaacacgcacggtgtgcctcgtcgtatgaacatcggccaggtgctg
gaagtccaccttggttggttggctgctgccggttggaagatcgaccccgaggaccccgct
aacgtcgagctgcttaagacgcttcctgaggatctgtacgacgttcctgctggttcgctt
accgcaacaccagtgttcgacggtgctaccaacgaggaagttgcaggcctcctagccaat
tctcgtccaaaccgcgacggcgatgtcatggtggatgcaaacggcaaggcacagcttttc
gacggtcgttccggcgagcctttcccatacccagtgtctgtcggctacatgtacatgctg
aagctgcaccacttggttgatgagaagatccacgcacgttctaccggcccttactccatg
attactcagcagccgttgggtggtaaggctcagttcggtggacagcgcttcggcgaaatg
gaggtgtgggcaatgcaggcttatggcgctgcctacacgcttcaggagcttctgaccatc
aagtctgatgacgtagtcggacgtgtgaaggtctacgaggcaatcgttaagggcgagaac
attccagatccgggtatccctgagtccttcaaggtgctcctcaaggagcttcaatcgctg
tgcttgaacgtggaagttctttctgcagacggcactccgatggagctgtccggttcggat
gacgacgagttcgaccaggccggtgcctcactgggcatcaacctgtctcgcgacgagcgt
tccgacgccgacatcgcctaa
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