Colwellia sp. MT41: CMT41_16965
Help
Entry
CMT41_16965 CDS
T04159
Symbol
rpoB
Name
(GenBank) DNA-directed RNA polymerase subunit beta
KO
K03043
DNA-directed RNA polymerase subunit beta [EC:
2.7.7.6
]
Organism
com
Colwellia sp. MT41
Pathway
com03020
RNA polymerase
Brite
KEGG Orthology (KO) [BR:
com00001
]
09120 Genetic Information Processing
09121 Transcription
03020 RNA polymerase
CMT41_16965 (rpoB)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
com03021
]
CMT41_16965 (rpoB)
03400 DNA repair and recombination proteins [BR:
com03400
]
CMT41_16965 (rpoB)
Enzymes [BR:
com01000
]
2. Transferases
2.7 Transferring phosphorus-containing groups
2.7.7 Nucleotidyltransferases
2.7.7.6 DNA-directed RNA polymerase
CMT41_16965 (rpoB)
Transcription machinery [BR:
com03021
]
Prokaryotic type
Bacterial type
RNA polymerase
Core subunits
CMT41_16965 (rpoB)
DNA repair and recombination proteins [BR:
com03400
]
Prokaryotic type
SSBR (single strand breaks repair)
NER (nucleotide excision repair)
TCR (transcription coupled repair) factors
DNA-directed RNA polymerase complex (RNAP)
CMT41_16965 (rpoB)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RNA_pol_Rpb2_6
RNA_pol_Rpb2_1
RNA_pol_Rpb2_3
RNA_pol_Rpb2_7
RNA_pol_Rpb2_2
RNA_pol_Rpb2_45
7TMR-HDED
Motif
Other DBs
NCBI-ProteinID:
ALO36236
LinkDB
All DBs
Position
complement(4006593..4010621)
Genome browser
AA seq
1342 aa
AA seq
DB search
MAYSYFEKKRIRKDFGKSVQVMEYPFLLSIQLDSFRKFIDLDTTGERGLEAAFRSIFPIK
AYSGSSELQYVSYRLGESLFDVKECQIRGVTYSAPLRVKLRLVVYDKEAAPGTVKDIKEQ
EVYMGEIPLMTENGTFVINGTERVIVSQLHRSPGVFFDHDKGKTHSSGKVLYNARVIPYR
GSWLDFEFDPKDNLFVRIDRRRKLPASIILRALEFSTEEILAMFYDTTNYAIKGDKLIMD
LIPERLRGETAVFDICIKKGEVLVESGRRITARHIRALSKAKLDKLEVPAEYIVGRVLSK
AYIDKSTGEVIAEANAIITLELLAELSQAGHKVLSTLYMNEFDVGSYMSDTLRVDGTTNK
LEALVEIYRMMRPGEPPTKDAAEGLFTNLFFSSERYDLSKVGRMKFNRRVGNADDVGTGI
LSKDDIISVMRTLINIRDGKGEVDDIDHLGNRRIRSVGEMAENQFRVGLVRVERAVRERL
SLGDLDAIMPQDLINAKPISAAVKEFFGSSQLSQFMDQNNPLSEVTHKRRISALGPGGLT
RERAGFEVRDVHPTHYGRVCPIETPEGPNIGLINSLSCYARTNDFGFLETPYRKVIDGLV
TDDIDYLSAIEEGNFVIAQANAKRDDKHMLTEELVNCRHKNEFTLKPSAEIQYMDVSPQQ
IISVAASLIPFLEHDDANRALMGSNMQRQAVPTLKVDKPLVGTGMEKVVAVDSGVTAVAK
RGGVVSYVDASRIVVKVNEDEMLAGEAGIDIYNLTKYTRSNQNTCINQRPVCRMGEPVVR
GDVLADGPSTDMGELALGQNMRIAFMPWNGYNFEDSMLLSERVAIEDRFTTIHIQELTCI
ARDTKLGSEEITADIPNVGESALSKLDEAGVVYIGAEVNGGDILVGKVTPKGETQLTPEE
KLLRAIFGEKAADVKDSSLRVPNSVKGTIIDVQIFTRDGVEKDARAVEIEQMQLKEVKKD
LGDELSIFEDGIFARTKKLLLSAGLNESDLTSMSRDNWLTQNLADEGQQGELEQIAEQWG
NIQEDFDKKFEVKRRKITQGDDLQPGVLKIVKVFLAVKRYIQPGDKMAGRHGNKGVISRV
VPIEDMPYDEFGVPVDIVLNPLGVPSRMNIGQILETHLGMACRGIGEKVNRMLEAQQEIH
KLRNFIQEVYDVGESRQTVDLSTFSDDEVMRLADNMRAGLTIATPAFDGAAEKDIKELFK
LADMPESGQFWLTDGRTGRKFERQVTVGYMYMLKLNHLVDDKMHARSTGSYSLVTQQPLG
GKAQFGGQRFGEMEVWALEAYGAAYTLQEMLTVKSDDVAGRTKMYKSLVDGDHSMDPGIP
ESFNVLIKEIRSLGINIELDKD
NT seq
4029 nt
NT seq
+upstream
nt +downstream
nt
atggcttactcatactttgagaaaaagcgaattagaaaggactttggtaaaagtgtacaa
gtaatggaatatccatttctattgtccattcaactcgattctttccgcaagtttattgat
cttgatacaacaggtgaacgcggtctagaggctgctttccgttctatattcccaattaaa
gcttattcaggtagctcagaattacaatatgtaagctatcgtttaggtgaatcattattt
gacgttaaagaatgtcaaatacgtggtgtgacatattctgcaccattacgcgtgaaatta
cgcttagtggtttacgataaagaagcggcaccaggtactgttaaagatatcaaagaacaa
gaagtgtacatgggcgaaatcccgttgatgacagaaaacggtaccttcgtaattaatggt
actgagcgtgttatcgtttcacaactacatcgttctccaggtgtattctttgatcacgat
aaaggtaaaacgcattcatcgggtaaagtattatataacgcacgcgttattccttaccgc
ggttcatggttagattttgaattcgatccaaaagataacttatttgttcgtatcgataga
cgtcgtaaactacctgcgtcaatcatcttacgagcattagagttttccactgaagaaatt
ctagcgatgttctatgacacaactaattacgccattaaaggtgataagttgatcatggat
cttatccctgaacgtcttcgtggtgaaacagcagtttttgatatttgtatcaagaaaggt
gaagtattagttgagtctggccgtcgtattactgcccgccatattcgcgctttatcaaaa
gctaaacttgataaactagaagtacctgcggaatatatcgttggtcgtgttttatcaaaa
gcttacatcgacaaatctaccggtgaagtgattgcggaagcaaatgctataatcacctta
gaattattagccgagcttagccaagcgggccataaagtactttctactttatatatgaac
gaattcgatgttggttcatacatgtctgatacccttcgtgtcgatggtacaactaacaag
ctagaagccttagttgaaatctatcgtatgatgcgtccaggcgagccaccaacaaaagat
gctgctgaaggactattcactaacttgttcttctcctctgagcgttatgacttatcaaaa
gtaggtcgtatgaagttcaaccgtcgtgttggtaatgctgatgatgttggtaccggcatt
ttatcaaaagacgatattatctcggtaatgagaaccttgatcaatattcgtgacggtaaa
ggcgaagttgatgatatcgatcacttaggtaaccgtcgtatccgttctgttggtgaaatg
gcagaaaaccaattccgtgttggtcttgttcgtgttgaacgtgccgtacgtgagcgttta
agtcttggtgacctagatgcaatcatgccgcaagatttaatcaacgctaagccaatttct
gcggcagtgaaagagttctttggctcatcacaattgtcacagtttatggatcaaaacaac
ccgttatcagaagtaacgcataaacgtcgtatttctgccttagggccgggtggtttaacc
cgtgaacgtgctggttttgaagtgcgtgatgtccatccaacgcattatggtcgtgtatgt
ccaatcgaaacgccagagggtccaaacattggtttgatcaactcgctttcgtgttatgca
cgtaccaatgatttcggtttcttagaaacaccttaccgtaaagtcattgacggtttagtg
actgatgacattgattacttatcagcgattgaagagggtaactttgttatcgctcaagct
aacgctaaacgcgatgataagcacatgttaacggaagagttagttaactgtcgtcataaa
aacgaatttaccttaaaaccgtctgctgaaattcaatatatggatgtttctccacaacaa
attatttctgttgcggcgtcacttattccattccttgaacatgatgatgctaacagagcc
ttgatgggttcaaacatgcaacgtcaagcggtacctaccctaaaagtggataaacctctt
gtcggtacgggtatggaaaaagttgttgcggttgattctggtgttactgccgttgccaaa
cgtggtggtgtggtgagctatgttgatgcttcacgtatcgttgttaaagttaatgaagat
gaaatgcttgctggtgaagcgggtattgatatttataacttaaccaaatacacccgttct
aaccaaaatacctgtatcaaccaacgtccagtgtgtcgtatgggtgagccagtggtacgt
ggtgatgtattagccgatggtccgtcaacagatatgggtgaattggcactaggccaaaac
atgcgtatcgccttcatgccttggaatggttacaactttgaagattcaatgttgttatct
gagcgtgttgctattgaagacagatttactactattcacattcaagaactaacctgtatc
gctcgtgatactaagcttggtagtgaagaaattaccgcagatattcccaacgtaggtgag
tcagcattatctaaattagatgaagcgggtgtggtttacattggcgctgaggtaaatggt
ggtgacatcctagtgggtaaagtaacccctaaaggtgaaacacaacttactccagaagaa
aaacttttacgtgctattttcggcgagaaagctgccgacgttaaagacagttctttacgt
gtacctaattcagtgaaaggtaccatcatcgatgtgcaaatattcactcgtgacggcgta
gaaaaagatgctcgtgcagttgaaattgaacaaatgcaacttaaagaagttaagaaagat
cttggcgatgaattaagcatctttgaagatggtatttttgcacgtactaaaaagttattg
ttatcagccggtttaaatgagtctgacttaacgtctatgtctcgtgacaattggttaacg
caaaacttagctgatgaaggtcaacaaggcgaattagagcaaatcgctgagcaatggggc
aacatccaagaagacttcgataagaagtttgaagtgaaacgtcgtaaaatcactcaaggt
gatgacttgcaacctggcgtgttaaaaatagttaaggttttcctagccgttaaacgttac
attcagccaggtgataaaatggcgggtcgtcacggtaacaagggtgttatttcaagagta
gtaccaattgaagatatgccatatgatgagtttggtgtacccgttgatatcgtgttgaac
ccgttaggtgttccatcacggatgaacattggtcagatcttagaaactcacttaggtatg
gcgtgtcgtggcatcggtgaaaaagtcaaccgtatgttagaagcacagcaagaaattcat
aaactacgtaacttcattcaagaagtttacgatgtaggtgagtctcgccaaaccgttgat
ctttcaactttctctgatgatgaagtgatgcgcttagctgataatatgcgcgctgggctt
accatagctacgccagcatttgatggcgctgctgaaaaagacatcaaagagctattcaaa
cttgctgatatgcctgaaagtggtcagttctggttaactgatggtcgtactggtcgtaag
tttgagcgccaagtaaccgtaggttacatgtatatgttaaaactaaaccatttagttgat
gacaaaatgcatgctcgttctactggttcatacagcttagttactcagcaaccactaggc
ggtaaagcgcaatttggtggtcagcgtttcggtgagatggaagtatgggccctagaagca
tatggtgcagcttataccttacaagaaatgttaacggtgaaatctgatgatgttgctggt
cgtactaagatgtataagagcttagtagacggtgatcacagtatggatccaggtattcct
gagtcgttcaatgtattaattaaagaaattcgttctttaggtattaacatcgaattagac
aaagactag
DBGET
integrated database retrieval system
