Chryseobacterium oranimense: N0B40_18705
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Entry
N0B40_18705 CDS
T08904
Symbol
rpoB
Name
(GenBank) DNA-directed RNA polymerase subunit beta
KO
K03043
DNA-directed RNA polymerase subunit beta [EC:
2.7.7.6
]
Organism
cora
Chryseobacterium oranimense
Pathway
cora03020
RNA polymerase
Brite
KEGG Orthology (KO) [BR:
cora00001
]
09120 Genetic Information Processing
09121 Transcription
03020 RNA polymerase
N0B40_18705 (rpoB)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
cora03021
]
N0B40_18705 (rpoB)
03400 DNA repair and recombination proteins [BR:
cora03400
]
N0B40_18705 (rpoB)
Enzymes [BR:
cora01000
]
2. Transferases
2.7 Transferring phosphorus-containing groups
2.7.7 Nucleotidyltransferases
2.7.7.6 DNA-directed RNA polymerase
N0B40_18705 (rpoB)
Transcription machinery [BR:
cora03021
]
Prokaryotic type
Bacterial type
RNA polymerase
Core subunits
N0B40_18705 (rpoB)
DNA repair and recombination proteins [BR:
cora03400
]
Prokaryotic type
SSBR (single strand breaks repair)
NER (nucleotide excision repair)
TCR (transcription coupled repair) factors
DNA-directed RNA polymerase complex (RNAP)
N0B40_18705 (rpoB)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RNA_pol_Rpb2_6
RNA_pol_Rpb2_2
RNA_pol_Rpb2_3
RNA_pol_Rpb2_7
RNA_pol_Rpb2_45
RNA_pol_Rpb2_1
Motif
Other DBs
NCBI-ProteinID:
UWX60409
LinkDB
All DBs
Position
4073968..4077789
Genome browser
AA seq
1273 aa
AA seq
DB search
MSKTTATTRGNQRINFSSAKGKIITPDFLDIQLESFRDFFQLDTLPEDRTDEGLYRTFQE
NFPITDSRNQFVLEFLDYLVDSPRYSIDECVERGLTYSVPLKARLKLYCTDPEHEDFQTV
VQDVYLGPVPYMTPSGSFIINGAERVIVTQLHRSPGVFFGQTYHANGTKLYYSRIIPFKG
SWMEFTTDINSVMYAYIDRKKKLPLTTLLRAIGYESDKDILQIFDLAEEVKVSKAALKKV
EGRTLAARVLNTWFEDFVDEDTGEVVSIERNEIILDRETILEKEHLDLILDAGVKSILIH
KENSNEFSIIQNTLQKDPTNSEKEAVEYIYRQLRNADPPDEETARGIIEKLFFSEQRYSL
GEVGRYRLNKKLGLNIPTTTEVLTKEDIIAIVRHLIELVNSKAEVDDIDHLSNRRIKTVG
EQLAGQFGVGLSRIARTIKERMNVRDNEIFTPLDLVNAKTLTSVINSFFGTNQLSQFMDQ
TNPLSEITHKRRLSALGPGGLSRERAGFEVRDVHHTHYGRICPIETPEGPNIGLISSLGI
YAKINNLGFIETPYRKVEDSKIDLSADPIYLNAEDEEDKVIAQANVELNDNGEFLTDRII
ARLDGDYPVVEPSQVNLIDVAPNQISGISASLIPFLEHDDANRALMGSNMMRQAVPLLKP
QAPIVGTGLEQQVAKDSRILINAEGTGIVEYVDADKITIKYERSEDEDLVQFESATKTYN
LTKFRKTNQSTTITLRPNVRVGETVQKGQVLCDGYATENGELALGRNLVVAFMPWKGYNF
EDAIVINEKVVREDWFTSIHVDEYSLEVRDTKLGMEELTADIPNVSEEATKDLDENGMIR
IGAEVKPGDIMIGKITPKGESDPTPEEKLLRAIFGDKAGDVKDASLKADSSLRGVVINKK
LFSRNIKDKKKRTEEKLKLEEIENTYKAKFDELRNTLIEKLNTLVGGKTSQGVTNDLDEE
IIGKGVKFTHKLLTSVEDYVNVSGADWTVDNDKNELVKQLIHNYKIKFNDIQGVKNREKF
AISIGDELPAGIMKLAKVYIAKKRKLNVGDKMAGRHGNKGIVSRIVREEDMPFLEDGTPV
DIVLNPLGVPSRMNIGQIYETVLGWAGQKLGMTFATPIFDGATLDQITEYTEKAGLPKFG
NTHLYDGGTGERFTQPATVGVIYMLKLGHMVDDKMHARSIGPYSLITQQPLGGKAQFGGQ
RFGEMEVWALEAFGASNILREILTVKSDDVIGRAKTYEAIAKGESMPEPGIPESFNVLLH
ELQGLGLDVRLEE
NT seq
3822 nt
NT seq
+upstream
nt +downstream
nt
atgagtaaaacaacagcaacaacaagggggaatcagagaattaacttctcatcagctaaa
ggaaaaatcatcactcctgacttcctggacatccagcttgagtcattcagagattttttc
cagcttgatacccttccagaagacagaacagacgaaggtttatacagaaccttccaggaa
aacttcccaatcaccgattccagaaatcagttcgtattggaatttcttgattatctggta
gattctccacgttattcaattgacgagtgtgtggaaagaggattaacgtattccgtgcct
cttaaagcaagacttaaattgtattgtacagaccctgagcacgaggatttccagactgtg
gttcaggatgtatacttaggcccggttccttacatgacgcctagcggatctttcatcatc
aatggtgcagagagagttattgttacgcagcttcaccgttcacctggtgtattcttcgga
caaacttaccacgcaaacggaaccaaactgtactattcaagaattatccctttcaaagga
tcttggatggaatttactaccgatatcaacagcgtaatgtacgcttatatcgaccgtaag
aaaaagttaccattaactacccttttaagagctatcggttacgaatctgataaagatatc
cttcagatcttcgaccttgctgaagaagtgaaagtttctaaagctgcccttaaaaaagta
gaaggaagaacattggctgcgagagtattgaacacttggttcgaggatttcgtagatgaa
gatacaggtgaagtagtttctatcgaaagaaacgaaatcatcctggatagagaaacgatt
cttgaaaaagaacatttagaccttatccttgatgctggtgtgaaatctattctgattcac
aaagaaaacagcaacgaattctctatcatccagaatacattacagaaagaccctacaaac
tctgaaaaagaagctgtagagtacatctatcgtcagttaagaaatgcagatccgccagat
gaggaaacagcaagaggaatcattgaaaaattattcttctccgagcaaagatattcattg
ggtgaagtaggacgttacagactaaacaaaaagttaggtcttaatatccctactaccact
gaggttcttacaaaagaagatatcattgctatcgtaagacaccttattgaattggtaaac
tctaaagcagaggttgatgatatcgaccacttatcaaacagaagaatcaaaactgttgga
gagcagttagcaggacagtttggggtaggtctttcaagaattgcaagaacaatcaaggaa
agaatgaacgttagagataacgaaatctttactccacttgatcttgttaatgctaaaact
ttaacatcggtaatcaactccttcttcggtaccaaccagctttctcagttcatggaccaa
accaacccactatcagagatcacgcacaagcgtagactttctgccctagggcctggtggt
ttatcaagagaaagagcaggtttcgaggttcgtgacgttcaccatacccactacggaaga
atctgtccgattgaaactccggaaggaccaaacatcggtttgatctcctctttaggtatt
tatgctaagatcaataaccttggtttcatcgaaactccatacagaaaagtagaagacagt
aagatagacctttctgccgatcctatctatctgaatgcagaagatgaagaagacaaagta
attgctcaggctaacgtagaactgaacgataacggagaattcttaacagacagaattatt
gcaagattggatggggactatccggtagttgaaccttctcaggttaaccttatcgacgtg
gcaccaaaccagatttccggtatctccgcttcattgattccgttcctggagcatgatgat
gcgaaccgtgcattgatgggatccaacatgatgcgtcaggccgttcctctattgaagcca
caagctccaatcgtgggtacaggtctggaacagcaggttgctaaagattcaagaatcttg
atcaacgctgaaggtacaggtatcgtagaatatgtagatgctgataagatcactatcaaa
tatgaaagaagcgaagacgaagacttggtacagtttgagtccgctactaaaacatacaac
ctgactaagttcagaaaaaccaaccaaagtactaccattaccctgagaccaaacgtaaga
gtaggtgaaacggtacagaaaggacaggtactttgcgacggttatgcaactgaaaacgga
gagctagctcttggtagaaacttagtggttgcgttcatgccttggaaaggatacaacttc
gaggatgcaattgtaatcaacgaaaaagttgtacgtgaagactggtttacttcaatccac
gtagatgaatattctcttgaagttcgtgataccaaacttggtatggaagagcttacagca
gatattcctaacgtttctgaagaagctaccaaagatcttgacgagaacggtatgatcaga
atcggagctgaagtgaagcctggagatatcatgatcggtaagatcactccaaaaggtgaa
tctgatccaactcctgaagaaaaacttcttagagccatctttggtgacaaggccggtgat
gtaaaggatgcttcattaaaagcagactcttcattaagaggtgttgtgatcaacaaaaaa
ttgttctcaagaaacattaaagataaaaagaagagaactgaagaaaaacttaagcttgaa
gaaattgaaaacacttacaaggctaagtttgatgagttgagaaacactttaattgaaaaa
ttaaatacactggtaggtggtaaaacttctcagggagttaccaacgaccttgatgaggaa
atcatcggaaaaggtgtgaaattcactcataaattactgacttcagttgaagattatgta
aacgtaagcggtgcagactggactgtagataatgataagaatgaattggttaaacaattg
attcacaactataaaatcaagttcaacgatatccagggagttaaaaaccgtgagaaattt
gctatttcaatcggagatgagcttccggcaggtatcatgaagttggctaaagtgtatatc
gctaagaaacgtaagttgaatgtaggggataaaatggcaggacgtcacggtaacaaaggt
atcgtttcaagaatcgttcgtgaagaagatatgccattccttgaagacggaacaccggta
gatatcgtattgaatccacttggggtaccttcccgtatgaacatcggacagatttatgaa
acagttcttggatgggctggtcagaaattgggtatgacgttcgctacaccaatcttcgat
ggagcaactcttgatcagattactgaatacacagagaaagcaggtcttcctaaattcggt
aacacccacctttatgatggaggtaccggggaaagatttacacagccggctacggttggg
gtaatctacatgctgaaactgggacacatggttgatgataagatgcacgcacgttctatc
ggaccttactcattgattactcagcagccgttaggaggtaaagctcagttcggtggtcag
agattcggagagatggaggtttgggctcttgaagcattcggagcttccaacatcctgaga
gagatccttacagtgaagtcggatgacgtgattggtagagcgaaaacttatgaagcaatt
gcaaaaggtgaatctatgcctgaaccaggtattccggaatcattcaatgtattacttcac
gagctacagggtcttggattagacgtaagactagaggaataa
DBGET
integrated database retrieval system
