Corynebacterium sp. Z-1: RIU96_04020
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Entry
RIU96_04020 CDS
T11129
Name
(GenBank) DNA-directed RNA polymerase subunit beta
KO
K03043
DNA-directed RNA polymerase subunit beta [EC:
2.7.7.6
]
Organism
core Corynebacterium sp. Z-1
Pathway
core03020
RNA polymerase
Brite
KEGG Orthology (KO) [BR:
core00001
]
09120 Genetic Information Processing
09121 Transcription
03020 RNA polymerase
RIU96_04020
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
core03021
]
RIU96_04020
03400 DNA repair and recombination proteins [BR:
core03400
]
RIU96_04020
Enzymes [BR:
core01000
]
2. Transferases
2.7 Transferring phosphorus-containing groups
2.7.7 Nucleotidyltransferases
2.7.7.6 DNA-directed RNA polymerase
RIU96_04020
Transcription machinery [BR:
core03021
]
Prokaryotic type
Bacterial type
RNA polymerase
Core subunits
RIU96_04020
DNA repair and recombination proteins [BR:
core03400
]
Prokaryotic type
SSBR (single strand breaks repair)
NER (nucleotide excision repair)
TCR (transcription coupled repair) factors
DNA-directed RNA polymerase complex (RNAP)
RIU96_04020
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RNA_pol_Rpb2_6
RNA_pol_Rpb2_7
RNA_pol_Rpb2_3
RNA_pol_Rpb2_2
RNA_pol_Rpb2_45
RNA_pol_Rpb2_1
RnfC_N
Motif
Other DBs
NCBI-ProteinID:
WNI13592
LinkDB
All DBs
Position
813302..816799
Genome browser
AA seq
1165 aa
AA seq
DB search
MLEGPNLAVSHQTMSMANIPGAPERYSFAKISEPVSVPGLLDVQSESFAWLVGTQEWRER
QRAERGDDAHITSGLEDILEEISPIQDYSGNMSLSLSEPRFEEIKYSIDECKEKDINYSA
PLYVTAEFINNDTQEIKSQTVFIGDFPLMTDKGTFIVNGTERVVVSQLVRSPGVYFDETI
DKSTERPLHAVKVIPSRGAWLEFDVDKRDTVGVRIDRKRRQPVTVLLKALGWTTQQITER
FGFSEIMMSTLESDGVANTDEALLEIYRKQRPGEQPTRDLAQSLLENSFFKAKRYDLARV
GRYKVNRKLGLGGDHDGLMTLTEEDIATTLEYLVRLHAGETEMKSPTGEIIPINTDDIDH
FGNRRLRTVGELIQNQVRVGLSRMERVVRERMTTQDAESITPTSLINVRPVSAAIREFFG
TSQLSQFMDQNNSLSGLTHKRRLSALGPGGLSRERAGIEVRDVHPSHYGRMCPIETPEGP
NIGLIGALASYARVNAFGFIETPYQKVENGKLTDQIDYLTADEEDRYAIAQAATPMDAEG
NLTGERIEVRLKDGDIGVVGANGVDYVDISPRQMVSVATAMIPFLEHDDANRALMGANMQ
KQAVPLLRSEAAYVATGMEQRAAYDAGDTVISRKAGVIEDVTGDFITVMDDEGIRDTYLL
RTFERTNQGTCYNQSPIVSAGDRVEAGQVIADGPGTKNGEMALGRNLLVAFMPWEGHNYE
DAIILNQRVVEDDILTSVHIEEHEIDARDTKLGAEEITREIPNVSEDVLKDLDERGIIRI
GADVRDGDILVGKVTPKGETELTPEERLLRAIFGEKAREVRDTSLKVPHGETGKVIAVRR
FSREDDDDLSPGVNEMIRVYVAQKRKIQDGDKMAGRHGNKGVVGKILPQEDMPFMADGTP
VDIILNTHGVPRRMNIGQVLEVHLGWLAHAGWTVNPDDPANAKLLETLPEHLYDVPPESL
TATPVFDGASNEEIAGLLANSKPNRDGDVMVDGDGKTVLFDGRSGEPFKYPVSVGYMYML
KLHHLVDEKIHARSTGPYSMITQQPLGGKAQFGGQRFGEMEVWAMQAYGAAYTLQELLTI
KSDDVVGRVKVYEAIVKGDNIPDPGIPESFKVLLKELQSLCLNVEVLTADGTPMELSGDD
DDFDQAGSSLGINLSRDEGAAADTA
NT seq
3498 nt
NT seq
+upstream
nt +downstream
nt
gtgctggaaggacccaacttggcagtctcccaccagaccatgtctatggccaatatcccc
ggagctccggagcgttactcgtttgcgaagatttccgagcccgtgagcgtgcccggattg
ctcgacgtgcagagtgaatctttcgcttggctcgtagggacccaggagtggcgcgagcgt
cagcgcgccgagcgcggcgacgacgctcatattactagcggcctcgaggacatcctcgag
gagatctcccctatccaggactactcgggcaacatgagcctgtctctgtccgagccgcgc
tttgaggagatcaagtactcgatcgacgagtgcaaagagaaggacatcaactactccgca
ccgctgtacgtcaccgcggagttcatcaacaacgacacccaggagattaagtctcagacg
gtgttcatcggcgacttcccgctgatgaccgacaagggcacgtttattgtcaacggcacc
gagcgcgtcgttgtctcccagctcgtgcgctccccgggcgtctactttgatgagacgatc
gacaagtccaccgagcgcccgctgcacgccgtgaaggtcatcccatcgcgtggcgcgtgg
ctggagttcgacgtcgacaagcgtgacaccgtcggcgtgcgcatcgaccgtaagcgccgc
cagccggtgaccgtgctactcaaggcgctgggctggaccacccagcagatcaccgagcgt
ttcggcttctcggaaatcatgatgtccaccctcgagtccgacggcgtggccaacaccgac
gaggcactgcttgagatctaccgcaagcagcgcccgggcgagcagcccacccgcgacctc
gcccagtccctgctggagaactccttcttcaaggcgaagcgctatgacctggctcgtgtc
ggccgctacaaggtcaaccgcaagctcggtctcggcggcgaccacgacggtttgatgacc
ctgaccgaggaagacatcgccaccacgctcgagtacctcgtgcgcctgcacgcgggcgag
acggagatgaagtccccgaccggcgagatcatcccgatcaacaccgacgacatcgaccac
ttcggcaaccgtcgcctgcgcaccgtcggcgagctcatccagaaccaggtccgcgttggc
ctgtcccgtatggagcgcgtcgtgcgcgagcgtatgaccacccaggacgcggagtcgatc
accccgacgtcgctgatcaacgtccgcccggtctccgccgccatccgtgagttcttcggc
acgtctcagctgtcgcagttcatggaccagaacaactcgctgtccggcctgacgcacaag
cgccgcctgtcggcgctcggcccgggtggcctctcgcgcgagcgtgccggcatcgaggtc
cgcgacgtgcacccgtcgcactatggccgcatgtgcccgattgagaccccggaaggcccg
aacattggtctgatcggcgctttggcctcctacgcgcgcgtcaacgcgttcgggttcatc
gaaacgccctaccagaaggtcgaaaacggcaagctgacagaccagatcgactacctcacc
gccgacgaggaggaccgctacgccatcgcgcaggcggccaccccgatggacgcggagggc
aacctcactggcgagcgcatcgaggtccgcctcaaggacggagacatcggtgtcgttggc
gccaacggcgtcgactacgttgacatctccccacgccagatggtgtccgtggcaacggca
atgattccgttccttgagcacgacgacgcgaaccgcgcgctgatgggcgccaacatgcag
aagcaggctgtgccgctgctgcgctccgaggccgcctacgtggcaaccggcatggagcag
cgcgccgcttacgacgcgggcgacaccgtgatcagccgcaaggctggcgtgattgaggac
gtcaccggcgacttcatcaccgtcatggacgacgagggcatccgcgacacctacctgctg
cgcacctttgagcgcaccaaccagggcacctgctacaaccagagcccgatcgtctccgct
ggcgatcgcgttgaggctggccaggtcatcgctgacggccccggcacgaagaacggcgag
atggcgcttggccgcaacctgctggtcgccttcatgccgtgggagggtcacaactacgag
gacgccatcattctcaaccagcgcgttgtggaagatgacatcctgacctcggtgcacatc
gaggagcacgagatcgatgctcgcgacaccaagctcggagccgaggaaatcactcgtgag
atcccgaacgtctccgaggacgtgctcaaggacctcgacgagcgcggcatcatccgcatc
ggcgcggacgtgcgcgacggcgacatcctggtgggcaaggtcaccccgaagggtgagacc
gagctgaccccggaggagcgcctgctgcgcgccatcttcggtgagaaggcccgcgaggtt
cgcgacacctccctgaaggtgccgcacggtgagaccggcaaggtcatcgctgtgcgccgc
ttctcgcgcgaggacgacgacgatctttccccgggcgtcaacgagatgatccgcgtctac
gtcgcccagaagcgcaagatccaggacggcgacaagatggctggccgacacggcaacaag
ggtgtcgtcggcaagatcctgccgcaggaagacatgccgttcatggccgatggcaccccg
gtggacatcatcttgaacacccacggtgtgccgcgtcgtatgaacatcggccaggtcctt
gaggttcacctcggctggctggctcacgccggctggaccgttaacccggacgacccggcc
aacgccaaactgcttgagacgttgccggagcacctctacgacgtgccgccggagtccctg
acggccaccccggtgttcgacggtgcaagcaacgaggagatcgcgggcctgctcgcgaac
tccaagcccaatcgcgacggcgacgtcatggtcgacggcgacggaaagaccgtgcttttc
gacggccgctccggcgaaccgttcaagtaccccgtctccgtgggctacatgtacatgctc
aagctgcaccacctggtggatgagaagatccacgcccgttccacgggcccgtactccatg
attacgcagcagccgctgggcggtaaggcccagttcggtggacagcgtttcggcgagatg
gaggtgtgggccatgcaggcatacggcgcggcttacacgctgcaggagcttctgaccatc
aagtcggacgacgtcgtgggccgcgtgaaggtctacgaggccattgtcaagggcgacaac
atcccggatccgggcatccccgaatccttcaaggtgctgctcaaggagctgcagtcattg
tgcctgaacgttgaggtcctcaccgccgacggcactccgatggagctctccggcgacgac
gacgatttcgaccaggccggttcatcgctgggcattaacctctcgcgcgacgagggtgca
gcggctgacacggcgtag
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