Campylobacter peloridis: CPEL_0458
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Entry
CPEL_0458 CDS
T03559
Symbol
rpoB
Name
(GenBank) DNA-directed RNA polymerase, beta subunit
KO
K03043
DNA-directed RNA polymerase subunit beta [EC:
2.7.7.6
]
Organism
cpel
Campylobacter peloridis
Pathway
cpel03020
RNA polymerase
Brite
KEGG Orthology (KO) [BR:
cpel00001
]
09120 Genetic Information Processing
09121 Transcription
03020 RNA polymerase
CPEL_0458 (rpoB)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
cpel03021
]
CPEL_0458 (rpoB)
03400 DNA repair and recombination proteins [BR:
cpel03400
]
CPEL_0458 (rpoB)
Enzymes [BR:
cpel01000
]
2. Transferases
2.7 Transferring phosphorus-containing groups
2.7.7 Nucleotidyltransferases
2.7.7.6 DNA-directed RNA polymerase
CPEL_0458 (rpoB)
Transcription machinery [BR:
cpel03021
]
Prokaryotic type
Bacterial type
RNA polymerase
Core subunits
CPEL_0458 (rpoB)
DNA repair and recombination proteins [BR:
cpel03400
]
Prokaryotic type
SSBR (single strand breaks repair)
NER (nucleotide excision repair)
TCR (transcription coupled repair) factors
DNA-directed RNA polymerase complex (RNAP)
CPEL_0458 (rpoB)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RNA_pol_Rpb2_6
RNA_pol_Rpb2_2
RNA_pol_Rpb2_3
RNA_pol_Rpb2_7
RNA_pol_Rpb2_45
RNA_pol_Rpb2_1
RnfC_N
Motif
Other DBs
NCBI-ProteinID:
AJC84318
LinkDB
All DBs
Position
456378..460511
Genome browser
AA seq
1377 aa
AA seq
DB search
MLNKQLGNRLRIDFSNVPQQIDIPNLLQLQKKSFDYFLNLNDKNTESGIEKVFKSIFPIH
DPQNRLSLEYVSSEVGKPKYTIRECMERGLTYSVNLKMKIRLTLHEKDEKTGEKIGIKDI
KEQEIYIREIPLMTDRISFIINGVERVVVNQLHRSPGVIFKEEESSTVANKLVYTAQIIP
DRGSWLYFEYDAKDVLYVRINKRRKVPITILFRALGYKKQDIIKLFYPIQTIHVKKDKFL
TEFNPNDFLDRVEYDLKDEKGNVIHQAGKRMTKKKAEQLVKDGVKWVEYPAEILANRYLA
NPIINKETGEVLFDSLTLLDEAKLAKIKEEKQFDIANDLANGVDAAIINSFIQDNETLKL
LKQTENIDDENDLAAIRIYKVMRPGEPVVKDAAKAFVNDLFFNPERYDLTKVGRMKMNHK
LGLDTPEYVTVLTNEDIVKTAKYLIKVKNGRGHIDDRDHLGNRRIRSIGELLANELHIGL
AKMQKSIRDKFTALNTDIDKVMPYDLINPKTITVTIMEFFTGGQLSQFMDQTNPLSEVTH
KRRLSALGEGGLVKERAGFEVRDVHATHYGRICPVETPEGQNIGLINTLSTYAKVNDLGF
VEAPYKKVENGKVSSEIIYLTATQEEGLIIAAASTKIDDKGNIVEEFVEARQDGETILAR
REEVQLIDLCSGMIVGVAASLIPFLEHDDANRALMGSNMQRQAVPLLRAEAPIVGTGMEK
IIARDAWEAIKAKRAGIVEKVDNKNIFILGEDENGPFIDHYKMEKNLRTNQNTTYTQHPI
VKKGDFVQEGQIIADGPSMDKGELAIGKNALIAFMPWHGYNYEDAIVISEKILREDTFTS
VHIYEKEVEARELKDGVEEITKDIPNVKEEDLAHLDESGIAKIGTHIKPGMILVGKVSPK
GEVKPTPEERLLRAIFGEKAGHVVNKSLYATASLEGVVVDVKIFTKKGYEKDTRAVKAYD
EEKLNLEKEHHDRLLMMDREETLRVCSLLSKSALNSAEEINGVKYKKGAKVEISELEKIN
RFALNSLVKAYSKDVQKEYEDLKNHFQNEKKKLKTEHDEKLEILEKDDILPSGVVKLVKV
YIATKRKLKVGDKMAGRHGNKGIVSNIVPEVDMPYLPDGRPIDIALNPLGVPSRMNIGQI
LESHLGLVGMRLGDQIQEIFDKKQKDFIKQLRQKMLEICSVSRLEIEKKFVQSLNDEQLI
SYARDWAKGIKFATPVFEGVTVEEFGKLFEMAKIAMDGKSELYDGRTGEKMAERVHVGCM
YMLKLHHLVDEKVHARSTGPYSLVTQQPVGGKALFGGQRFGEMEVWALEAYGAAHTLREM
LTIKSDDVEGRFSAYKALTKGENVPATGIPETFFVLTNELKSLALDVEIFDKDENNE
NT seq
4134 nt
NT seq
+upstream
nt +downstream
nt
atgttaaacaaacaactaggaaatcgtctaagaattgacttctcgaatgttccacaacaa
attgacattccaaacttattacaattacaaaaaaagagttttgattattttttaaattta
aatgataaaaataccgaaagcgggattgaaaaagtatttaaatcgatatttccaatccat
gatccacaaaatagattaagtttagaatatgtaagtagtgaagtaggtaagccaaaatac
accataagagagtgtatggaaagaggtttaacttattctgtaaatttaaaaatgaaaatt
cgtctaactttacatgaaaaagatgaaaaaacaggtgaaaaaataggcattaaagatata
aaagaacaagaaatttatataagagaaatacctttaatgacagatagaatttcttttatt
atcaatggggttgaaagagttgttgtaaatcaactacacagaagcccgggtgttattttt
aaagaagaagaaagttctactgttgcaaataaattagtatatacagcacaaatcatccca
gatcgtggatcttggttgtattttgaatatgatgctaaagatgttctttatgtgcgtatt
aataaaagaagaaaagttcctataacaattttatttagagcattagggtataaaaaacaa
gatataataaaattattttatcctatacaaactatacatgtaaaaaaagataaattttta
accgaatttaatccaaatgattttttagatagagttgaatatgatttaaaagatgaaaaa
ggaaatgttatccatcaagctggtaaaagaatgactaagaaaaaagctgaacagcttgtt
aaagatggtgtaaaatgggttgagtatccagctgaaattttagctaatagatacttagca
aatcctatcatcaataaagaaacaggtgaagttttatttgattctttaactttgcttgat
gaagcaaaattagctaaaataaaagaggaaaagcaatttgatatagctaatgatttagca
aatggagttgatgctgctataattaattcctttattcaagataatgaaactttaaaattg
ctaaaacaaactgaaaatattgatgatgaaaacgatttagcggctattagaatttataaa
gttatgagaccaggagagcctgttgtaaaagatgctgctaaagcttttgttaatgattta
ttttttaatccagaaagatatgatttgactaaagttggtcgtatgaaaatgaatcataaa
ctaggtttagatactccagaatatgtaacagttttaactaatgaagatatagtaaaaact
gcaaaatatttaataaaagtaaaaaatggtaggggtcatattgatgatagagaccatttg
ggtaatcgtcgtattagatcaattggcgaacttttggctaatgaacttcatattggcctt
gctaaaatgcaaaaatccatcagagataaattcactgcattaaatacagatattgataag
gtaatgccatatgatttaatcaatccaaaaactataactgttactataatggaatttttt
acaggtggacaattatctcaatttatggatcaaactaatcctttaagtgaagttacacat
aaacgccgtttatcagctcttggagaaggtggcttagttaaggaaagagcaggttttgaa
gtgcgtgatgttcatgcaactcattatggtagaatttgtcctgttgaaactccagaagga
caaaatattggtttgattaatactttatcaacttacgctaaagtaaatgatttaggtttt
gtcgaagcaccttataaaaaagttgaaaatggaaaagtaagcagcgagattatttattta
actgcaacccaagaagaaggtttaattattgctgctgcatcaacgaaaattgatgataaa
ggtaatattgttgaagaatttgtagaagcaagacaagatggtgaaactattttagctaga
agagaagaagtgcaattaatcgatctttgttctggtatgattgttggtgttgctgcttca
cttattcctttcttagaacatgatgatgcaaatagagcattaatgggttcaaacatgcaa
cgccaagcggttccgcttttaagagcagaagcccctatagttggaactggtatggaaaaa
attattgcgcgtgatgcttgggaagcaattaaagcaaaaagagcaggtatagtagaaaaa
gttgataataaaaatattttcattttgggtgaagatgaaaatggtccttttatagatcat
tataaaatggaaaagaatttaagaacaaatcaaaatacaacttatactcagcatcctata
gtgaaaaaaggtgattttgttcaagaaggacaaataatagcagatggtccaagtatggat
aagggtgagcttgctataggcaaaaatgctttaattgcttttatgccttggcatggatat
aactatgaagacgctattgtaattagtgaaaaaattttacgcgaagatacttttactagt
gttcatatttatgaaaaagaagtggaagcaagagagcttaaagatggtgtagaagaaatt
actaaggatattccaaatgtaaaagaagaagatcttgcacatcttgatgaaagcggtata
gcaaaaattggtactcatataaaaccaggtatgattttagttggtaaggtgtctccaaaa
ggcgaagttaagccaactccagaagaaagattattaagagctatttttggtgagaaagct
ggccatgttgttaataaatctttatatgcaactgcgtctttagaaggtgtggtagttgat
gtaaaaatttttacaaaaaaaggttatgaaaaagatacacgcgcggtaaaagcttatgat
gaagaaaaattaaatctcgaaaaagaacatcatgataggcttttaatgatggatagagaa
gaaactttaagagtatgctctttactttcaaaatcagcgctaaattcagcagaagaaatt
aatggcgtgaaatataaaaaaggtgctaaggttgaaattagcgaacttgaaaaaatcaat
cgttttgcgctaaattctttggttaaagcatactctaaagatgtccaaaaagaatatgaa
gatcttaaaaatcactttcaaaatgaaaagaaaaaattaaaaactgaacatgatgaaaaa
ttagagatattagaaaaagatgatattttaccaagtggagttgttaagcttgttaaagtt
tatatagctactaaaagaaaacttaaagttggagataaaatggcaggacgccatggaaat
aaaggtatcgtatctaatatcgttccagaagttgatatgccatatttaccagatggaaga
cctattgatatagctttaaatcctcttggggttccaagtcgtatgaatataggacaaatt
cttgaaagtcatttaggtttagtaggtatgagactaggagatcaaattcaagaaattttt
gataaaaaacaaaaagattttatcaaacaattacgccagaaaatgcttgaaatttgtagt
gtttcaagacttgaaattgagaaaaaatttgttcaatccctaaatgatgaacaattaata
tcttatgctagagactgggcaaaagggataaaattcgcaactcctgtatttgaaggggtg
acagttgaggaatttggtaagctctttgagatggcaaagattgctatggatggaaaaagt
gagctttatgatggaagaaccggtgaaaaaatggcagagcgtgtgcatgttggatgtatg
tatatgcttaaattacatcacttagttgatgaaaaagttcatgcaagaagtacaggacct
tatagccttgtaacccagcagcctgttggtggtaaggctttatttggtggtcaaagattt
ggagagatggaagtttgggctttagaagcttatggtgcagcacatactctaagagaaatg
cttactataaaatcagatgatgtagaaggtagatttagtgcttataaggctttaacaaaa
ggtgagaatgttccagcaacaggtattccagaaacattctttgtgcttacaaatgaactt
aaatctcttgctttagatgttgagatttttgataaggatgaaaataatgagtaa
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