Cucurbita pepo subsp. pepo (vegetable marrow): 111784741
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Entry
111784741 CDS
T05351
Name
(RefSeq) tetratricopeptide repeat protein SKI3
KO
K12600
superkiller protein 3
Organism
cpep
Cucurbita pepo subsp. pepo (vegetable marrow)
Pathway
cpep03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
cpep00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
111784741
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
cpep03019
]
111784741
Messenger RNA biogenesis [BR:
cpep03019
]
Eukaryotic type
mRNA degradation factors
3'-5' decay
Ski complex
111784741
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
TPR_11
TPR_2
TPR_1
TPR_16
TPR_17
TPR_14
TPR_CcmH_CycH
TPR_8
TPR_12
ARM_TT21_C
TPR_19
TPR_9
TPR_7
BTAD
TPR_10
Motif
Other DBs
NCBI-GeneID:
111784741
NCBI-ProteinID:
XP_023521120
LinkDB
All DBs
Position
Unknown
AA seq
1164 aa
AA seq
DB search
MVKETECCDVPRLSPAATEPEIEKAYHIEEEVAVEKDHVRESGTPCITSRQLQDTVNAHP
DDPSSHFKLGIFLWDTGRSHDKAVAADHFLKSAKLDPQNAAAFKYLGDYYASFSVDIERA
LKCYQRAVSLDVHDFHSGEALCDLLHREGKESLEVAICKEASSKSTRAFWAFRRLGYLQV
FQKKWTEAVLSLQHAIRGYPSCANLWEALGLAYQRLGRFTAAIKSYARAIEIEGDRILAW
VESGNIFLMLGLFKKRALEISPKSITAQFGLSSGLLGLAKECINRGAFKWASFLLEEASK
VARGSTYLAGNLSCIWKLLGDIQHTYAKCYPWMEEDWGLCAESFRTSILSWKQTRSLALL
SAKCSYQQALHLAPWEANIYTDIAITLDIISTLNGDSGSEFNSWQISEKMTLGALMLEGD
NHEFWVAMGCISNHDALKQHAFIRALQLDGSLAGAWAYLGKLYRNRGEMQLARQAFNYAR
SIDPSLAIPWAGMSADLNIRESTSDEAFESCLRAASILPVPEFQIGLAKLSLQACHLSSP
QVFGGIRQAVQLAPCYPESYNLNGLAFEAQLDYQSAVAAYRLAHLTTSHFSDRVPRSHVR
DISINLARSLCMVGNFFEASQEYENLSKEGILDIEGLQVYAFSLWKLGKNDQALSTVRTL
ASCISTMEKTRTAASVGFICRLLYSISGLDSAINSIMKMPTHFFRSSKVSFVVAAIHAID
GCDRLDSIVLSCRSCLQSHEEITKMHILIALSKLIKHQTDNCLGFHSGVMHLRKALHAYP
NSSLMRNLLGYLLLSNEERDDNHTATRCCNMLYGFDQQNKGLKSAYEIHGAGAVACYTIG
TSHPRFSFPTCSYQCQNGIGTIRQLQKCLRQDPWNYDARYLLILNILQKAREERFPCHLR
ATIERLILVAFSNEPYFNKDTSHQYKKFQLLLCASEISLQGNDQIKCINYAKAASSISLP
DNYLFYAHLLLCRAYAAENDSNNLRNEFIKCLDLKTDNYLGWVCLKFIASRYELHVESNS
LELSFKKGSVESKDLQHVVMPVSGLVDGLIAFWSQDFMAAEKYFAQACSSGHDDGCLLLC
HGVTCMELARQLCSPHFLRLAVNNMRPAELLFQMHLLAKQSKVGPDQLRVELCQSPLRWV
LRAIHVNPSCMRYWKVLQSLWNEG
NT seq
3495 nt
NT seq
+upstream
nt +downstream
nt
atggtgaaggagacggaatgctgtgacgtgcctcgactcagccccgccgctacagaaccc
gaaatcgagaaagcttatcacatcgaggaagaggttgcagtagaaaaagatcatgtaaga
gaatcggggaccccttgtattacatcaagacaattgcaagatacagttaacgctcatcca
gatgacccctcctcccatttcaaactcgggattttcctgtgggacactggcagaagccac
gataaggcggttgctgcggatcattttctgaaatcagcgaaactagaccctcagaatgct
gctgctttcaaatatctaggggattattatgcctcattttctgttgacatcgaaagggct
ctcaagtgctaccagagagctgtcagtcttgatgttcatgattttcactctggagaagca
ttgtgtgatctgttgcatcgtgaaggaaaggagagtttagaggttgctatatgcaaagag
gcttcctctaagtcaactcgagccttttgggctttccggaggttgggctatttgcaggtt
tttcaaaagaagtggactgaagccgtcttaagtcttcagcatgccattcgaggatatcct
tcttgtgctaatttgtgggaagccctgggtcttgcatatcagcgacttggccggtttact
gctgcaattaagtcatatgcacgggccattgaaattgaaggagatagaattcttgcttgg
gttgagagtggaaatatcttcttgatgcttggtttgttcaaaaaacgagctctagagata
tcacctaaaagtattactgcacaatttgggctctcttcagggctgcttggtttggcaaag
gaatgcattaataggggggcgtttaaatgggcatcctttctgttagaggaagcatctaaa
gttgcaagaggaagtacatatttagctgggaacttgtcgtgtatctggaagttgcttgga
gatattcagcatacgtatgcaaaatgctatccatggatggaagaggactgggggctatgt
gcagaatcttttagaacttctatcctttcctggaaacagactcgcagtttggctttattg
tctgccaaatgttcctatcagcaagctctacacttggctccgtgggaagctaacatttac
acagatattgctattactttagatattatttcaactttgaatggtgattctggatctgaa
ttcaattcctggcagatatctgaaaagatgacattaggggccttgatgctcgagggtgac
aatcatgaattttgggtggcaatgggatgcatctctaaccatgatgcgttgaagcaacat
gcttttataagagcattacagttggatggatcgctggctggagcctgggcttatcttggg
aagctatacaggaataggggagagatgcaattggcaagacaggcatttaattatgccaga
agtatagatccatctctggcaataccttgggctggcatgtcggctgatttgaatattagg
gagtccacatcagatgaagcatttgagagctgtttgagagctgcatcaatactaccagtg
ccggaatttcaaattggacttgccaagctttctctgcaggcatgccatctttcatctcca
caggtgttcggaggcatacgtcaggctgttcaacttgcaccttgttaccctgaatcctat
aatctaaatggactagcttttgaggcacaattggattatcaatctgctgttgctgcttat
cgtctagcacacctcacgactagccatttttcagatagagttccaaggtctcatgtcaga
gatatatccatcaacttagccagatcactctgcatggtaggaaatttctttgaagcttcg
caggaatatgaaaatttgagtaaagaaggcatactcgacattgaaggtctgcaggtgtat
gcattctcattatggaaactaggaaagaatgaccaggcccttagcaccgtgagaaccctt
gcttcttgcatctctaccatggaaaaaacacgtactgctgcatctgttggtttcatatgc
agattgttgtattcaatatctggattggattccgcaatcaacagtatcatgaagatgcca
acccattttttccggagttcaaaagtgagctttgtagtggctgctattcatgccattgat
gggtgtgatcggcttgactccattgttctaagctgccgttcctgcctccagtctcatgaa
gagataactaaaatgcacattttgattgcactttctaagctgatcaaacatcaaacggat
aactgcctgggattccatagtggagtgatgcatcttcgaaaagctcttcatgcatacccc
aacagtagtttgatgaggaacctgcttggttatcttttgctatccaacgaagaaagagat
gacaatcacacagctactaggtgctgcaacatgttgtatggttttgaccaacagaacaaa
ggtctgaaatctgcatatgaaattcacggtgctggagctgtggcctgctatacaatcggc
acgagtcatccgaggttttctttcccaacatgttcataccagtgtcagaatggaattggg
accattcgacaacttcaaaaatgcttacgtcaagacccatggaattatgatgctcgatat
cttcttatactaaacattctgcagaaggcacgtgaagaaagatttccctgtcatctacgt
gcaactattgagcggctaatcttggttgccttttccaatgagccatattttaataaagat
acatctcatcaatataaaaagtttcagctgctactttgtgcatctgagatcagtttacaa
ggcaatgaccaaattaaatgcatcaactatgccaaagctgcttcctctatttcacttcca
gacaattatcttttttatgcacatttgttactgtgccgagcctatgctgcagaaaatgat
tctaacaacctccgtaatgaattcataaaatgtttggatttaaagacagataactatctt
ggatgggtatgtcttaaattcattgcatctcgatatgagcttcatgttgaatccaatagc
ttagaacttagtttcaagaaaggatcagtagagagcaaggatctgcaacacgtggtaatg
cccgtgtctggtctggtggatggtttgatagctttttggagccaggattttatggcggct
gagaagtattttgctcaagcttgttcctcgggacatgatgatggctgtctcctcctctgt
catggtgtaacctgcatggaacttgcaaggcagctttgcagtcctcatttcttgaggctg
gctgtgaacaatatgaggcctgcggagctcttgtttcaaatgcatctgcttgcaaaacag
tcgaaagttggtcctgatcagttgagggttgagttatgtcagtctcctctgagatgggtt
cttcgcgcaatccatgtaaacccttcttgtatgagatattggaaggtgctgcaaagcttg
tggaatgagggctga
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integrated database retrieval system
