Cucurbita pepo subsp. pepo (vegetable marrow): 111790227
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Entry
111790227 CDS
T05351
Name
(RefSeq) CCR4-NOT transcription complex subunit 1-like
KO
K12604
CCR4-NOT transcription complex subunit 1
Organism
cpep
Cucurbita pepo subsp. pepo (vegetable marrow)
Pathway
cpep03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
cpep00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
111790227
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
cpep03019
]
111790227
Messenger RNA biogenesis [BR:
cpep03019
]
Eukaryotic type
mRNA surveillance and transport factors
mRNA cycle factors
P-body specific factors
111790227
mRNA degradation factors
3'-5' decay
Ccr4-NOT complex
111790227
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Not1
CNOT1_CAF1_bind
CNOT1_TTP_bind
ARM_Cnot1
DUF3819
CNOT1_HEAT
NOT1_connector
Motif
Other DBs
NCBI-GeneID:
111790227
NCBI-ProteinID:
XP_023526846
LinkDB
All DBs
Position
LG03:13653543..13672676
Genome browser
AA seq
2374 aa
AA seq
DB search
MLMFSATTSSQIRFLLHSLTESNAESILNELCEFIDCGVEGSFILLRTCLDHFTSHGSDL
DNPLLRLVVSSVFKHLLDRPNFSTIFCESLKTRDINQVILENISNLLNLSMCERIGVGLA
VSDSENLNTRTCGNNFCITQIEELCANAVSMDSTQQIQDIIMFLQRSEGLSKHLDSFMQM
LSLVQLKDVTEFVLSPLLSDELREEKILRNVNLSHESRDNDFDSILAEMEKEMSMGDIMK
ELGYGCTVNATQCKEIVSLFLPLTEITISKILGMIARNHTGLEDSRNLYTTFSLALGCSA
LSDLPSLNSWDVDVLIDTVKQLAPSIDWIRVMENLDHEGFYIPNEEAFTFFMSVYRRACQ
DTFPLHTICGSVWKNMEGQISFLKHAVSAPPEIFTFAHSGRQLAYIDGLHGHKLQLGHTN
QAWMCLDLLDILCELAERGHARSVQSMLEFPLKNWPELLLLGMAHTNTAYNLLQFEVSFS
IFPLMLRNPLGSDLIFQLWHVNLNLVLRGFVDAQNSDPDCMVRIVEICQELKILLSVLDM
IPPSCSIRLAAIASRQECLDLEKWLSNSLNTYKDVFFEECLKFLKGIHYGGSQDFTTKPF
YPSNAISNIYLDTASTFLKVLRSNVSTTASAKLFEEMEKLHDAVLESNPKLQNGDAPDAP
GAEGGYTDDIEAEANSYFQQMFSGQLTIEAMVQMLSRYKESSVKREQSIFECMIANLFEE
YRFFPKYPERQLKIAAVLFGSVIKHQLVTHLTLGIALRGVLDALRKPADSKMFVFGTKAV
EQFVDRLIEWPQYCNHILQISHLRSTHVELVAFIEQALLRLSAGHSDSDATAGNVELQQK
HETAMDDRLKVIGSSVSDVKQFLSSVGQTSIQPVGDAPTNQKNTISTPAVLTSASGFVRP
SRGAASTRFGSALNIETLVAAAEKRETPLEAPASDVQDKISFMINNISLANLEAKAKEFS
EILKEQFFPWFAQYMVMKRASIEPNFHDLYLKFLDRVNSKALSKEIVQATYENCKVLLGS
ELIKSSSEERSLLKNLGSWLGKLTIGRNQVLRAREIDPKSLIIEAYEKGLMIAVIPFTSK
VLEPCQSSLAYQPPNPWTMGILGLLAEIYSMPNLKMNLKFDIEVLFKNLSVDMKEITPTS
LLKDRKREVEGNPDFSNKDVGASQTQMVAEAKPSIMSSLNQVELPLEVATPSNSGNHTHL
LSQYVPPLHLSSGTLMEDEKLAALGLSDQLPTAPGLLQATTSPSPFSTNQLPAGIPNIGS
LVVINQKLNSLGLHIHFQRAVPIAMDRAVKEIVSGIVQRSVSIATQTTKELVLKDYAMES
DETRIFNAAHLMVASLAGCLAHVTCKEPLRGSISSQLRSSLQNLGVASDLLEQAVQLVTN
DNLDLGCAIIEQAATDKAIQTIDGEIAQQLSLRRKHREGVNTTFFDTGMYAQGPLGVVPE
ALRPKPGHLSISQQRVYEDFVRLPLQNQNSQAAQSTGSSITASGTGLSSQFGLSSGQLNS
GYTSGLVAGLEGGSRSLDDAVDPTCVPQLSATPGHIAADGVGVRGPENDLGVASFPLAAS
TPELPAADTSDNIKEPGSSSQPLSSPITTDRLATTMSEPSLTTRDALDKFQVISQKLEAL
VSNEARETDFQGVIAEVPEIILRCVSRDEAALAVAQKVFKVLYDNASNTFHVGAHLAILI
AIRDVCKLVVKELTSWVIYSEEERKYNKDITLGLIRSELLNLAEYNVHMAKLIDGGRNKA
ATEFAISLLQTLVVEESSVISELHNLVDALAKVAAKPGSSEPLQQLVEIIKNPSASTAAI
SGVNVGKEDKARLARDKKAPGHSTANREDSSFLESEDPVGFRDQVSILFAEWYRICELPG
ANEAAFNHFIIQLHQNGLLKGDDMTDRFFRLLTEISVAHCLSSEVINSGALQSPQQIQNL
SFLAIDIYAKLVFSILKGSGKTSLLSRILAVTVRFIQKDAEEKKASFNPRPYFRLFINWL
PDLGCLEPIVDGANFQILTAFANAFHALHPLKIPAFSYAWLELVSHRSFMPKMLTGNSQK
GWPYIQRLLVDVFQFMEPFLRNAELGPPVYFLYKGTLRVLLVLLHDFPEFLCDYHFTFCD
VIPPSCIQMRNIILSAFPRNMRLPDPSTPNLKIDLLAEINQSPRILSEVDGALKSKQMKA
DVDEYLKTRQQGSSFLADLKQKLLLPPIEAASAGTRYNVPLINSLVLYVGMQAIQQLQAR
SPHAQSTANTVTLAVFLVGAALDIFQTLIVELDTEGRYLFLNAVANQLRYPNTHTHYFSF
VLLYLFAESTQEIIQEQITRVLLERLIVNRPHPWGLLITFIELIKNPRYNFWNRSFIRCA
PDIERLFESVSRSCGGPKSADENMVQNWVPDTAH
NT seq
7125 nt
NT seq
+upstream
nt +downstream
nt
atgctgatgttttcggctacgacgtcgtctcagattcgcttcctcctccacagcttgact
gaatctaatgctgaatccattctcaacgagctctgcgagtttattgactgtggagttgaa
ggaagcttcatactgctcagaacttgtttggatcatttcactagtcatgggtcagatttg
gacaacccgctgttgcgactagttgtttcctctgttttcaagcatctcttggacagaccc
aattttagtacaatattttgcgagtcccttaaaactagagatatcaaccaagttattctt
gagaacatctcgaatctgttaaacttgtcaatgtgtgaaagaattggagttggtctcgct
gtttcagattctgaaaatctcaatacaaggacgtgtggaaataacttctgcattactcag
attgaggaactttgtgctaatgctgtatctatggattccactcagcaaattcaggatatt
atcatgttcctccaacggtctgaagggctctcaaagcatttagattccttcatgcaaatg
ctatctttggtgcagttaaaagatgttacagagtttgttttgtcaccgctgctttcagat
gaattgcgagaggagaaaattttaaggaatgtaaatctgtcacatgagtcccgtgataat
gattttgattccatcttagccgaaatggagaaggaaatgagcatgggagatattatgaag
gaactgggttatggatgcacagtcaatgctacacaatgcaaagagatcgtgtccctcttc
ttgccgctgacagagattactatctctaagatacttggcatgatagctcgcaatcacact
ggtcttgaggacagtcgaaatttatatacaacttttagtctagctttgggttgcagcgcc
ttatctgatcttccatccttgaactcatgggatgtggatgttctcatagacacagtgaag
caacttgcacctagcattgactggataagagtaatggaaaatctggatcacgagggtttt
tacatacctaatgaggaagcattcacatttttcatgtctgtatatagacgtgcatgccag
gacacgtttcctcttcatactatttgtggttcggtttggaagaatatggagggtcagatt
tccttccttaaacatgctgtgtcggcaccacctgaaatatttacatttgctcactctggg
agacagctggcttatattgatggactgcatggccataagcttcaacttggacatacaaat
caagcatggatgtgtcttgatcttttggatatactgtgtgaacttgctgagagaggtcat
gctagatctgtgcaatcaatgctggagtttcctcttaaaaactggcctgagctattgcta
cttgggatggcacatactaacaccgcatacaatcttctccagttcgaagtttctttttca
atcttcccattgatgttaagaaatcctcttggtagtgatttaatctttcagctatggcat
gttaaccttaatctggtgttacggggatttgtggatgctcaaaacagtgatccagattgc
atggttaggatagttgaaatctgccaagaattgaagatacttttgtcagtactagatatg
attcctccttcctgcagtatcagattagctgctattgcttcacgacaggaatgtttagac
cttgagaagtggttgagtaacagtttgaacacatacaaagatgtattttttgaggaatgc
ctcaagttcttaaaagggattcattatgggggatctcaagattttacaaccaaacctttt
tatccttccaatgcgatttcaaatatttatctcgacactgcttctactttcttgaaggtt
ctaagatctaatgtgagtactactgcttctgctaaactatttgaggaaatggagaagttg
catgatgctgttctggagtcgaacccaaagctgcaaaacggtgatgctccagatgcgcct
ggagcagaaggaggatatacagatgacattgaggccgaagctaattcctacttccaacaa
atgttttccggtcagttgaccattgaagcgatggttcaaatgctttctcggtacaaggaa
tcttcagttaaaagggaacaatcaattttcgaatgcatgattgcaaatctttttgaggag
tatagattcttcccgaaatatcctgaaagacagctgaaaattgcggcagttctctttggc
tctgttattaagcatcagcttgtaactcaccttactcttgggattgcattgcgtggtgtc
cttgatgcacttcgtaaacctgcagattcaaaaatgtttgtgtttggtaccaaggctgta
gagcagtttgtggatcgtttgattgagtggccacagtactgcaatcatattctgcaaata
tcacatttacgaagcacgcatgtggaacttgttgctttcattgaacaggctcttctgagg
ctatctgcaggccattctgattctgatgctactgcaggaaatgtggagcttcaacaaaaa
catgaaactgccatggatgatcgacttaaagtcattggatcatcagtcagtgatgtaaaa
caatttttatcttctgtggggcaaacttcaattcaacccgtaggtgatgctcctacaaat
caaaagaatacaatcagtactccagctgtgttgacttctgcctctggttttgtccgtcct
tcacggggggctgcttctaccaggtttggttcagctttgaatattgaaacgcttgttgct
gcggctgagaaaagagaaactcctctagaggctcccgcatcggatgtacaggataagatt
tcatttatgattaataatatttcacttgctaatcttgaagccaaagcaaaagaattttcg
gagattttgaaggagcagtttttcccctggtttgctcagtatatggtcatgaagagggct
agcattgagccaaatttccatgacttgtatttgaagtttctggaccgagttaattcaaaa
gctttgagtaaagagattgttcaggctacttacgagaactgcaaggttctgttaggatca
gagcttataaaatcaagctcagaagaacgttcactgctgaagaatttgggaagctggctt
gggaaactaacaattggcaggaatcaagtattgcgagctcgtgaaatagatccaaaatct
ttgataattgaggcatatgaaaaagggttaatgattgctgtaataccatttacttctaag
gttcttgaaccatgtcaaagtagtttagcataccaacccccaaacccttggaccatgggc
attcttggactactggcagagatttattcaatgcctaacttgaaaatgaacctgaagttt
gacattgaggttctgtttaagaatcttagtgtggatatgaaagaaataacgccaacttct
cttcttaaagaccggaagagagaagttgaaggtaatcctgatttttctaataaggacgtt
ggagcatctcagacgcagatggtagctgaagcaaagcccagcataatgtcttctttaaat
caagtggagcttccactggaggttgcaacaccatcgaattctggaaatcacactcacctg
ttatcgcagtacgttcccccgcttcatctttcttctggcacattaatggaagacgaaaag
cttgctgcgctgggcttgtctgatcagcttcctactgcccctggactcttacaagctaca
acgtcgccatcaccattctcaaccaatcagcttcctgcgggtatccctaatataggaagt
cttgttgtgatcaaccagaagcttaatagtttgggattgcacattcattttcagagagca
gttccaattgcaatggatagagctgtcaaagagatcgtttctggtattgtgcagcgtagt
gtctctatagccacccaaacaacaaaggaactggttttgaaggattacgccatggaatca
gatgagacccgaatatttaatgcagcgcatttgatggttgctagtctggctggatgtcta
gcacacgtgacttgcaaggaacctttacgaggttcaatatcaagtcaactcagaagttct
ctccagaatttgggcgttgccagtgatctgcttgagcaagctgttcagcttgttacaaat
gataaccttgatcttggctgtgccataattgaacaggctgctacagataaggctatacaa
accattgacggtgaaatagcccaacagctgtctttaagaaggaagcatagagagggtgtt
aatacaaccttttttgacactggtatgtacgcacaaggacctcttggtgttgtgcctgag
gctctccgtcccaagccaggacatctgtccatttcacaacagcgagtttatgaggatttt
gttaggcttcccttgcaaaatcaaaatagccaagctgcacagtctactggttcttcaatt
acagctagtggtactggtttgagtagtcaatttggtttgtcatcgggacaactgaactca
ggatacacatctggacttgttgctggacttgaaggaggatctcggtctctggatgatgct
gtagaccctacctgtgtgccccaactaagtgcaactccaggacatattgctgctgatggt
gttggcgtgcgaggtccagaaaatgatttgggcgttgcttctttccctttggctgcatca
acccctgagctccctgcagctgatacctctgacaatataaaggaacctggatcttcttcc
caaccattgtcctcacctatcacaactgatcgtcttgcgactactatgtcagaaccctca
cttaccaccagagatgcattggataaattccaagttatttcacagaagttggaggctttg
gttagtaatgaggctcgggaaactgacttccagggtgtcattgccgaggttcctgagatc
atactaagatgtgtaagtcgggatgaagctgctcttgctgtggcgcaaaaggtgtttaaa
gttttatacgacaatgcatcaaacacttttcatgttggtgcccatcttgccattctgatt
gccattcgcgatgtttgcaagctagttgtaaaggaacttactagctgggtgatttactcc
gaggaagagcggaagtacaacaaggacattactcttggccttattcgcagtgaactacta
aatcttgcagaatataatgttcatatggcgaaactaattgatggaggcaggaataaggcc
gcaacagagtttgccatatccctcctccaaacattggttgtggaagaatcaagtgttatt
tccgaacttcacaatcttgttgatgcattagctaaggtagctgcaaaacctggatcttca
gagcctttgcaacaactggttgagataatcaagaatccatctgctagtacagctgctata
tctggggttaacgttgggaaagaggataaggctagacttgccagagacaaaaaggctcct
ggacattccacagcaaacagagaagattctagttttctcgaatctgaagatccagttggt
tttcgtgatcaggtatcaatactatttgctgaatggtaccgaatatgtgagctacccggt
gctaatgaagccgcatttaaccatttcataatacaattacatcagaatgggcttctgaaa
ggggatgatatgacggatcggtttttccgtctgctcacagaaatttctgtggcacattgt
ttatcatctgaagtaattaattcgggtgcattacaatcaccacaacaaatacagaatcta
tcattccttgcgatcgacatttatgccaagcttgtattttcgatcttgaagggatctggt
aaaacttctcttttatccaggattctggcagtgactgtaagattcattcagaaagatgcc
gaagagaagaaagcatcgtttaatccgagaccatattttagattgtttattaactggctt
cctgaccttggctgtctagaacctattgttgatggtgccaactttcagatattgacagct
tttgctaatgcatttcatgcgttgcaccctcttaagattccagcgttcagctatgcttgg
cttgagctggttagtcatagaagttttatgccaaagatgcttactgggaatagtcagaag
ggttggccatacatccagcgtttgctggtagacgtgttccaattcatggagccatttttg
cggaacgctgaacttggaccaccggtttattttctttataaaggcacccttagggtgttg
cttgtcttacttcatgatttccctgagttcctatgtgactatcattttactttctgcgat
gtgattcctcctagctgcattcagatgcggaatattatccttagtgcgtttcctcgtaac
atgagactaccagatccgtccacccccaatttgaagattgacttgcttgcggaaatcaat
caatccccacgtattctatctgaggtggatggagctcttaaatcaaagcagatgaaggcc
gacgtggatgagtatctcaagacaaggcaacagggatcatcgtttctggctgatctgaag
cagaagttgctacttcctcccattgaagctgcttctgctgggacgcgttacaatgtgcct
ttgatcaactccctcgtactttacgtcgggatgcaggccatccaacaacttcaggcaaga
agtcctcatgctcagtcaacggctaatactgttacattagcagtatttctggtgggtgct
gctctagatattttccagactctgatcgtggagttggatactgaagggcggtacctcttc
ctcaatgccgttgcaaaccaacttcgttatccgaatacccacacccattacttctctttt
gtgctcctataccttttcgctgaatcgactcaggaaattatccaggagcagataacaaga
gtgttgttggaacgcctcattgtcaatagacctcatccatggggactgctgattacattc
attgaacttattaagaatccaagatacaacttttggaaccggtcctttataagatgtgca
ccagatatcgaaagactatttgagtcggtctctagatcctgcggtggccctaaatctgca
gacgagaacatggttcaaaattgggtacctgataccgcccactag
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integrated database retrieval system
