Cucurbita pepo subsp. pepo (vegetable marrow): 111793723
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Entry
111793723 CDS
T05351
Name
(RefSeq) SWI/SNF complex component SNF12 homolog
KO
K11650
SWI/SNF-related matrix-associated actin-dependent regulator of chromatin subfamily D
Organism
cpep
Cucurbita pepo subsp. pepo (vegetable marrow)
Pathway
cpep03082
ATP-dependent chromatin remodeling
Brite
KEGG Orthology (KO) [BR:
cpep00001
]
09120 Genetic Information Processing
09126 Chromosome
03082 ATP-dependent chromatin remodeling
111793723
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
cpep03021
]
111793723
03036 Chromosome and associated proteins [BR:
cpep03036
]
111793723
Transcription machinery [BR:
cpep03021
]
Eukaryotic type
RNA polymerase II system
Coactivators
BAF/PBAF complex
111793723
Chromosome and associated proteins [BR:
cpep03036
]
Eukaryotic type
Chromatin remodeling factors
BAF complex
111793723
PBAF complex
111793723
GBAF(ncBAF) complex
111793723
BRITE hierarchy
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Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
SWIB
Motif
Other DBs
NCBI-GeneID:
111793723
NCBI-ProteinID:
XP_023531507
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Position
LG04:12523238..12526219
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AA seq
562 aa
AA seq
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MSVNNNNNANSNSVVRNIGGTMPVNNSPSSNNLGRNIGAASHFGNSGMVQQARPMNHHSQ
SQSQMHGGTHFSGHFQLSEPQSRIMSQVQYTQAHAQAQAQSAHAQFQARTQPVQLHSAKA
SNVTITPSVSTPGTGSSKRPTQKPPSRPPGSSNSSASSPFKTMELTPAARRKKAKLPEKQ
IPDKVAALLPESAIYTRLLEVEGRIDAALARKKNDIQESLKNPSRIQKTLRIYVFNTFEN
QNHNSSDQKNVESPSWSLKITGRILEDGKDPAIAGDMQNYDSTYPKFSSFFKKITIYLDQ
SLYPDNHIILWESSRSPVLQEGFEVKRKGDKEFTAVIRLDMNYMPEKYRLSPALSDVLGL
ETDTRSRIMAALWHYVKANKLQNSNDPSFFTCDPGLRKVFGDEKVKFSMVSQKISQHLIP
PPPINLQHRVKISGNSPVGTTCYDVVVDVPFPIEKQMSAFLANLEKHKDIDSCDELITTA
VKKIQEHYQRRAFFLGFSQSPAEFINTLISSQTKDLRIVAGDASRLAEKERHSNFYSQSW
LEDAVFRYLNRKPAGSDVPGSA
NT seq
1689 nt
NT seq
+upstream
nt +downstream
nt
atgtctgtgaataacaacaacaatgctaatagtaacagtgtggtgaggaatattggggga
actatgccggtgaataacagccctagtagtaacaatttggggaggaatattggggcagcc
tcgcattttgggaattcaggcatggttcagcaagcaaggccaatgaatcatcattctcag
tcacagtctcaaatgcacggcgggacgcatttttcaggtcattttcagttatccgagcca
cagtcgcgtataatgtctcaggtacagtatacgcaggctcatgcacaggcacaagctcaa
tctgctcatgcacagtttcaagctcgtactcaacccgttcagctgcatagtgctaaggct
agtaatgttactataacaccctctgtgtcaacacctgggacagggagttctaagaggcct
actcagaagccaccttctaggcctccaggatcttctaacagtagcgctagttcacctttt
aaaaccatggagttaactccagctgctagaagaaagaaggctaagcttcctgagaaacaa
atacccgataaagttgctgctcttctgccagaatctgccatctatacccgactgctcgaa
gttgagggtcggatagatgctgctctggcaagaaagaaaaatgatattcaagagtcttta
aagaatccttcgcgcattcagaagaccctacggatctatgtcttcaatacgtttgaaaat
cagaatcataatagttctgatcagaagaatgtagaatccccttcttggtcgcttaagata
actgggaggatcttggaagatggaaaagatcccgctatagctggagacatgcagaattat
gattctacttacccaaaattttcatctttcttcaagaaaatcactatatacttagaccag
agcctttatccagataaccacataattttatgggagagttctcgttctcctgttctgcaa
gagggatttgaagtgaagagaaaaggagataaagaatttactgcagtgataagattggac
atgaattacatgcctgaaaaatatcgtctttcacctgctttatcagatgtgcttggactc
gaaacagacacccgctcaagaattatggctgcactatggcattatgtgaaagctaacaag
ttgcagaattcaaatgatccttctttcttcacatgtgatccaggtctacgaaaagtgttt
ggtgacgagaaggtcaagttttctatggtatctcagaagatatcgcaacatttaattcct
ccaccacctataaacttacagcatagagttaagatttcgggaaattctcctgttggaact
acatgttatgatgtcgtggtggatgtaccgtttccaatagaaaagcaaatgtcagcattc
ttggcaaacctggagaagcataaagatatagattcatgtgatgaattgattactactgca
gtaaagaagattcaagagcactatcaaaggcgagctttctttcttggcttcagtcagtct
ccagcagagtttatcaatacgttgatatcttctcaaactaaggatttaaggatcgttgct
ggtgatgctagccgtcttgcagagaaagaacgacactctaatttttacagtcaatcctgg
ttggaggatgctgtgtttcggtacctgaaccgcaaacctgctggaagtgatgttcctgga
agcgcttaa
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