Cucurbita pepo subsp. pepo (vegetable marrow): 111798808
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Entry
111798808 CDS
T05351
Name
(RefSeq) pectate lyase-like
KO
K01728
pectate lyase [EC:
4.2.2.2
]
Organism
cpep
Cucurbita pepo subsp. pepo (vegetable marrow)
Pathway
cpep00040
Pentose and glucuronate interconversions
cpep01100
Metabolic pathways
Brite
KEGG Orthology (KO) [BR:
cpep00001
]
09100 Metabolism
09101 Carbohydrate metabolism
00040 Pentose and glucuronate interconversions
111798808
Enzymes [BR:
cpep01000
]
4. Lyases
4.2 Carbon-oxygen lyases
4.2.2 Acting on polysaccharides
4.2.2.2 pectate lyase
111798808
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GFIT
Motif
Pfam:
Pectate_lyase_4
Pec_lyase_N
Beta_helix
DUF3560
Motif
Other DBs
NCBI-GeneID:
111798808
NCBI-ProteinID:
XP_023537911
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Position
LG07:4119676..4121858
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AA seq
464 aa
AA seq
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MIPFRALFLCSLLFVVVCADSDANADLEVDKTPDVEVDKINVTDTDKGIDLEKADEYWQK
RAAEAHKAAQKAFNPDPDSVADNFNTAVGQEIVNSNNSRRSLRRYSGPCLATNPIDRCWR
CDPNWDKNRRKLAECPLGFGHQTIGGKRGPIYVVTDASDENLVDPKPGTLRHAVVQNGPR
WIIFGRSMIIRLSQELIISSNKTIDARGFNVHIAFGAGLTIQFVHNIIIHGLHIHDIISK
SGGMIRDAFDHYGFRTQSDGDGISIFGSSHVWIDHVSMYNCQDGLIDAIMASTAITISNS
HFTHHNEVMLFGASDSYKEDSIMQITLAFNHFGRGLVQRMPRCRFGFFHVVNNDYTHWLM
YAIGGSQHPTIVSQGNRFIAPPNPSAKQITKREYADESEWKNWSWRSEGDLMINGAYFVP
AGDQTKGKKGEFSRYDMIKFKPGAYVKRLTRFAGTLECQVGKPC
NT seq
1395 nt
NT seq
+upstream
nt +downstream
nt
atgatcccttttagagccttgtttctttgttccttgttgtttgtcgtcgtatgtgccgat
tccgatgccaatgccgatcttgaagtcgataagacacctgatgttgaagttgataagata
aacgttactgataccgataaaggaattgatctcgaaaaggctgatgaatactggcaaaaa
cgtgctgctgaagctcataaggctgctcaaaaggccttcaatcctgaccccgattccgtt
gctgataactttaacacagccgttggccaggagatagtgaacagcaacaattcaaggagg
agcttgaggagatacagtggtccatgcttggcgaccaaccccattgaccgatgctggagg
tgcgacccaaattgggacaagaatcgaagaaagctagccgaatgtccattagggttcggc
caccaaaccatcggcggcaagagaggacccatttacgtggtgacagacgcctccgatgaa
aacctagtcgaccccaagcctggaaccctacgccacgcggttgtccaaaacggcccaaga
tggatcatattcgggcgcagcatgatcatcaggctatcccaagagctcataatctcaagc
aacaagaccatcgacgcccgcggcttcaatgtccacatagccttcggcgcagggctcact
attcaattcgtgcataatatcatcatccatggccttcatatccatgacattatttccaag
tccggtggaatgattagagatgcatttgatcattatgggttccgaacacaaagcgatggc
gatggtatttcaatctttgggagctctcatgtttggatcgatcatgtttcaatgtacaat
tgtcaagacgggttaattgatgccattatggcttccactgccattacaatctccaatagt
catttcactcaccataacgaggttatgttattcggagctagtgatagctataaggaagat
tctataatgcaaataacccttgcattcaaccattttgggaggggattggtgcaaagaatg
ccaaggtgtagatttgggttcttccatgtggttaataatgactatactcattggcttatg
tatgccattgggggcagccagcaccccaccattgttagccaagggaaccgtttcattgcc
cctccgaatccgagcgcgaaacagataacgaagagagagtatgccgatgagtccgaatgg
aagaattggtcatggcggtcggagggagatttgatgatcaacggggcgtactttgttccg
gccggggatcaaaccaaggggaagaagggcgaattctcaagatatgatatgattaaattc
aagccaggagcctacgtgaaaaggcttacacgcttcgctggaacacttgagtgtcaagta
ggcaagccatgctaa
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