Cucurbita pepo subsp. pepo (vegetable marrow): 111799741
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Entry
111799741 CDS
T05351
Name
(RefSeq) CCR4-NOT transcription complex subunit 1-like isoform X1
KO
K12604
CCR4-NOT transcription complex subunit 1
Organism
cpep
Cucurbita pepo subsp. pepo (vegetable marrow)
Pathway
cpep03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
cpep00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
111799741
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
cpep03019
]
111799741
Messenger RNA biogenesis [BR:
cpep03019
]
Eukaryotic type
mRNA surveillance and transport factors
mRNA cycle factors
P-body specific factors
111799741
mRNA degradation factors
3'-5' decay
Ccr4-NOT complex
111799741
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Not1
CNOT1_CAF1_bind
CNOT1_TTP_bind
ARM_Cnot1
DUF3819
CNOT1_HEAT
NOT1_connector
Motif
Other DBs
NCBI-GeneID:
111799741
NCBI-ProteinID:
XP_023538966
LinkDB
All DBs
Position
LG08:4232783..4260751
Genome browser
AA seq
2392 aa
AA seq
DB search
MLMFSTATSSQIRFLLHSLTESNAESVLKELYEFIDCGTEGSFLLLRTCLDYFTSHGTDL
ENPLLRLVISSVFKHLLDRPNFSTIFCESLKGRDINQVILENISNLLNLSMCERIGVGLA
VSDSENLDARMCGKNFCISQIEELCANAVSVDSIQQIQDIIMFLQRSEGLSKHLDSFMQM
LSLVQLKDVTEFVLSPLLSDELREEKFLRNVNLSQESLDNDFDSILAEMEKEMSMGDIMK
ELGYGCTVNATQCKEILSLFLPLTEITISKILGMIVRNHTGLEDSRNIYTTFSLALGCSA
LSDLPSLNSWDVDVLIDTMKQLAPSVDWIRVMENLDHEGFYIPNEEAFSFFMSVYRRACQ
EAFPLHTICGSVWKNMEGQISFLKHAVFAPPEIFTFAHSGRQLAYIDGVHGQKLQLGHTN
HTWTCLDLLNILCELAERGHARSVQSILEFPLKNWPELLLFGMAHINTAYNLLQYEVSFS
VFPLMLRNRLGSGLILQLWHVNPNLVLRGFVDAQNSDPDCIVRILDICQELKILLSVLDM
IPYSCGLKLAAIASRKEFLDLEKWLSNSLNSYKDAFFEECLKFLKEIHYGGSQDFSTKPF
YPSNAFSNIYLETASTFLKVLRSNVGTITSTQLSEEMEKLHGAVQESSPKLQNGGASDVP
ATEGYAEDIETEANSYFQQMFSGQLTIEVMVQMLARFKESSVKREQSIFDCMIANLFEEY
RFFPKYPERQLKIAAVLFGSVIKHQLVTHLTLGIALRGVLDALRKPADSKMFVFGTKAVE
QFVDRLIEWPQYCNHILQISHLRTSHMELVAFIEQALMKISAGHSDSDATSGNVELNSSS
NIQAGQQHSSAAQLQQKHENAIDDQLKVTGPSVIDGKPILSTVGQTSIQPIGGASTIQKV
QNTINNPTVLSSSGFVRPPRVAASTRFGSALNIETLVAAAEKRDTPIEAPASDVQDKISF
MINNISLANYEAKAKEITEILKEQFYPWFAQYMVMKRASIEQNFHDLYLKFIDSVNSKAL
SKEIVQASYENCKVLLGSELIKSSSEERSLLKNLGSWLGKLTIGRNQVLRAREIDPKSLI
IEAYEKGLMIAVIPFTSKVLEPCQSSLAYQPPNPWTMGILGLLAEIYSMPNLKMNLKFDI
EVLFKTLSVDVKEITPTSLLKDRKREIEGNPDFSNKDVGASQPQMVAEMKSSIMSSLNQV
ELPLEVATASNSGNHSHLLSQYAAPLHLSSGTLMEDEKLAVLGLSDQVPTAQGLLQATPT
PSPYSTNQLPAGIPNIGSLVVINQKLNSLGLHIHFQRAVPIAMDRAVKEIVSGIVQRSVS
IATQTTKELVLKDYAMESDETRIFNAAHLMVASLAGCLAHVTCKEPLRGSISSQLRSSLQ
GLGVASDLLEQAVQLVTNDNLDLGCAIIEQAATDKAIQTIDGEISQQLSLRRKHREGVNP
TFYDTGMYAQGPLGVVPEALRPKPGHLSVSQQRVYEDFVRLPLQNQNSQAAQSAGSSITA
SGTGLSSQFGLSSGQLNLGYTSALVTGLEGVSRALEESGEPTSVPQLSATPGQIAADGVG
VRCPENDLDDGSFPSAASTPELHAVDTSDTVNEPGSSSQPSPSPITTDRHATTMSEPSLT
TRDALDKFQVISQKLEALVSNEARETEFQGVIAEVPEIILRCISRDEAALAVAQKVFKVL
YDNASNSFHVGAHLAILIAIRDVCKLVVKELTSWVIYSEEERKYNKDITLGLIRSELINL
AEYNVHMAKLIDGGRNKAATEFAISLLQTLVVEESSVISELHNLVDALAKVAAKPGSPEP
LQQLVEIIKNPAASTASMSGVNVGREDKARLSRDKKAPGHTIASKEDSSILESEDPAGFR
DQVSILFAEWYRICELPGGNEAAFNHFILQLHQNGLLKGDDVADRFFRLLTEISVAHCLS
SEVINSGALQSPQQTQNLSFLAIDIYAKLVFSILKGSGKTALLSRILAVTVRFIQRDAEE
KKASFNPRPYFRLFINWLPDLGSLEPIVDGANFQILTAFANAFHALHPLKIPAFSYAWLE
LVSHRSFMPKMLTGNSQKGWPYIQRLLVDMFQFMEPFLRNAELGPPVHFLYKGTLRVLLV
LLHDFPEFLCDYHFTFCDMIPPSCIQMRNIILSAFPRNMRLPDPSTPNLKIDLLAEINQS
PRILSEVDGALKSKQMKADVDEYLKTRQQGSSFLAGLKQKLLLPPSEAASAGTRYNVPLI
NSLVLYVGMQAIQQLQARSPHAQSTANTVTLAVFLVGAALDIFQTLIVELDTEGRYLFLN
AVANQLRYPNTHTHYFSFVLLYLFAESTQEIIQEQITRVLLERLIVNRPHPWGLLITFIE
LIKNPRYNFWNRSFIRCAPDIERLFESVSRSCGGPKSADENMIQNWVPDTAH
NT seq
7179 nt
NT seq
+upstream
nt +downstream
nt
atgctgatgttttcgactgcaacctcctcccagattcgcttcctcctccacagcttgact
gaatctaatgctgaatctgttctcaaagagctttatgagtttattgactgtggaactgaa
gggagcttcctactgctcagaacttgtttggattatttcactagccatgggacagatttg
gaaaacccgctgttgcgactagttatttcctcagttttcaagcatctcttggacagacct
aattttagtacaatattttgtgagtcccttaaaggtagagatatcaaccaagttattctc
gagaacatctcgaatctgttaaacttgtcaatgtgtgaaagaattggagttggtctcgct
gtttcagattctgaaaatcttgatgcaagaatgtgtgggaagaacttctgcattagtcag
attgaggaactttgtgctaatgctgtatctgtggattccattcagcaaattcaggatatt
atcatgttcctccaacggtctgaagggctctcaaagcatttagattccttcatgcaaatg
ctatctttggtgcagttgaaagatgttactgagtttgttttgtcaccactgctttcagat
gaattgcgagaggagaaatttttaaggaatgtaaatctgtcacaggagtcccttgataat
gattttgattccatcttagctgaaatggagaaggaaatgagcatgggagatataatgaag
gaactgggttatggatgcacagtaaatgcaacgcaatgcaaagagattttgtccctcttt
ttgccgctgacagagattactatctctaagatactaggcatgatagttcgaaatcatact
ggtcttgaggacagtcgaaatatatatacaacttttagtctagctttgggttgcagcgct
ttatctgatctgccatccttgaactcttgggatgtggatgttctcatagacacaatgaag
caacttgcacctagtgttgactggataagagtaatggaaaatctggatcatgagggtttt
tacattccgaatgaggaagcattctcatttttcatgtctgtatatagacgtgcatgccag
gaggcatttcctcttcatacaatttgtgggtccgtttggaagaatatggagggtcagata
tctttccttaaacatgccgtatttgcaccacctgaaatatttacatttgctcactctgga
agacagctggcttatattgatggagtgcatggccagaagcttcaacttggacatacaaat
cacacatggacgtgccttgatcttttgaatattctgtgtgaacttgctgagagaggtcat
gctagatctgtgcaatcaattctggagtttcctcttaaaaactggcctgagctattgcta
tttggaatggcgcatattaatactgcatataatctgcttcagtatgaagtttctttttca
gtcttcccattgatgttaagaaatcgtcttggtagtggtttaatccttcagctatggcat
gtaaaccctaatctggttttacggggatttgtggatgctcaaaacagtgatccagactgc
atagttaggattcttgacatctgccaagaattaaagatacttttgtcagtgttagatatg
attccttattcctgcggtctcaaattagcagccattgcttcacgaaaggaatttttggac
cttgagaagtggttgagtaatagtttgaactcatacaaagatgcatttttcgaggaatgt
ctcaagttcttaaaagagattcattatgggggatctcaagatttttcaaccaagcccttt
tatccttctaatgccttttcaaatatttatttggaaactgcttctactttcttgaaggtt
cttagatctaatgtgggtactattacttctactcaactatctgaagaaatggagaagttg
catggtgcagttcaggaatcaagcccaaagctgcaaaatggtggagcttcagatgtgcct
gcaacagaaggatatgcagaagacattgagaccgaagctaattcgtactttcaacaaatg
ttttctggtcaattaaccattgaagtgatggttcaaatgcttgctcggttcaaagaatct
tcagttaaaagggaacaatcaatattcgattgcatgattgcaaatctttttgaggagtac
agattcttcccaaaatatcctgaaagacagctgaaaattgcagcagttctctttggctct
gttattaagcatcagcttgtaactcaccttacactggggattgcgctgcgtggtgtcctt
gatgcacttcgaaaacctgcagattctaaaatgtttgtgtttggtacaaaggccgtagag
cagttcgtggatcgtttgattgagtggccgcagtactgcaaccatattctgcaaatatca
catttgcgaacctctcatatggaacttgttgctttcattgagcaggctcttatgaagata
tctgcaggccattctgattctgatgctacttcaggaaatgtggagttaaatagttctagc
aacattcaagctggtcaacagcattcttcggcagctcagctacaacaaaaacatgaaaat
gcgattgacgatcagcttaaagtcactggaccatcagttattgatggaaaaccaatttta
tctaccgtggggcaaacttcaattcaacccataggtggtgcttctaccattcaaaaggtg
cagaatacaatcaataatccaacagtgttgtcttcctctggttttgtccgtcctccacga
gtggctgcttctaccaggtttggttcagctttgaatattgaaacgcttgttgctgcggct
gagaaaagagacactccgattgaggctccagcatcggatgtgcaggataagatttcattt
atgatcaataatatttcacttgctaattatgaagccaaagcaaaagaaattactgagatt
ttgaaggagcagttttatccctggtttgctcagtacatggtcatgaagagggctagcatt
gagcaaaatttccatgacctgtacttgaagtttattgacagtgttaattcaaaagcgtta
agtaaagagattgttcaagctagttatgagaactgcaaggttctgttgggatcggagctt
ataaaatcaagctcagaagaacgatcattgctaaagaatttgggaagctggcttgggaaa
ctaacaattggtaggaatcaagtgttgcgagctcgtgaaatagatccgaaatctttgatc
attgaggcttatgaaaaggggctaatgattgcagtaataccatttacttccaaggttctt
gaaccatgtcaaagtagtttagcttaccaacccccaaacccttggaccatgggcattctt
ggactactggcagagatttattcaatgcctaacttgaaaatgaacctcaagtttgatatt
gaggttttattcaagactcttagtgtggatgtgaaagaaataacgccaacttctcttctc
aaagaccggaagagagaaatcgaaggtaatcctgatttttcaaataaagatgtgggagca
tcccagccgcagatggtagctgaaatgaagtccagcataatgtcttctttaaatcaagtg
gagcttccactggaggttgcaacagcatcaaattctggaaatcatagtcacctgttatcc
cagtatgctgctccacttcatctttcttctggcacattaatggaagacgaaaagcttgct
gtgttgggcttgtctgatcaggttcctactgcccagggactcttacaagctacaccaacc
ccatcaccatattcaaccaatcagcttcctgcaggtatccctaatataggaagtcttgtt
gtgatcaaccagaagcttaatagtttgggcttgcacattcattttcagagagcagttcca
attgcaatggatagagctgtcaaagagattgtttctggtattgttcagcgtagtgtctct
atagctacccaaacgacaaaagaacttgttttgaaggattatgcaatggaatcagatgag
acccgaatatttaatgctgcgcatttgatggttgctagtctggctggatgtctagcacac
gtgacttgcaaggaacccttacgaggttcaatatcaagtcaacttagaagttcgcttcag
ggtttgggtgttgccagtgatctgcttgagcaagctgttcagcttgtaacaaatgataac
cttgatcttggttgtgccatcattgaacaggctgctacagacaaggcaatacagaccatt
gacggtgaaatctctcaacaactgtctttaagaaggaagcatcgagagggtgttaatcca
accttttatgacactggcatgtatgcacaaggacctcttggtgttgtgcctgaggctctt
cgtcccaaaccagggcatctgtctgtttcacaacagcgcgtttatgaggactttgttagg
cttcctttgcaaaatcaaaatagccaagctgcacagtctgctggttcttcaattacagct
agtggtactggcttgagtagtcaatttggtttgtcatcgggacaactgaacttgggatac
acatctgcacttgttactggacttgagggagtttctcgggcacttgaagaatctggagaa
cctacttctgtgccccaactaagtgcaactccaggtcaaattgctgctgatggtgttggt
gtacgttgtccagaaaatgatttggatgatggttctttcccttcagctgcttcaacccct
gagctgcatgcagtagatacctctgacactgtaaatgaacctggatcctcttcccaacca
tcgccctcgcctattactactgatcgtcatgcaaccactatgtcagaaccttcgcttact
accagagatgcattggataaattccaagttatttcgcaaaagttggaagctttggttagt
aatgaggctcgggaaactgaatttcagggcgtcattgccgaggttcctgagatcatacta
agatgtataagtcgggatgaagctgctcttgctgtggctcaaaaggttttcaaagtttta
tatgacaatgcatcaaacagtttccatgttggtgcccatcttgccattctgattgccatt
cgtgatgtttgcaagctagttgtaaaggagcttactagctgggtgatttactctgaggaa
gaacggaagtacaacaaggacattactcttggcctcattcgcagtgaactaataaatctt
gctgagtataatgttcatatggccaaactaattgatggaggcaggaataaggccgcaact
gagtttgcaatatccctcctccaaactttggttgtcgaagaatcaagtgttatttcagaa
cttcacaatcttgttgatgcattagcgaaggttgctgcaaaacctggatcgccggagcct
ttgcaacagcttgttgagataatcaagaatcctgctgctagtacagcttctatgtctggg
gttaatgttgggagagaggacaaggctagactttccagagacaaaaaggctcctggacac
accattgcaagcaaagaagattctagtattcttgaatctgaagatccagctggttttcgt
gatcaggtgtcaatattatttgctgaatggtatcgaatatgtgagcttcctggtggtaat
gaagctgcatttaaccatttcatactacaattacatcagaatggacttctgaaaggggat
gatgtggctgaccggtttttccgtctgctcacggaaatttctgtggcacattgcttatca
tcagaagtaattaactcgggtgcattacaatctccacaacaaacacagaatctatctttc
cttgcaattgatatttatgccaagcttgtattttcgatcttgaagggatctggcaaaact
gctcttttatcaaggattctggcggtgaccgtaagattcattcagagagatgccgaggag
aagaaagcatcatttaatccaagaccatattttagattgtttattaactggcttcctgac
cttggatctctagaacctattgttgatggtgccaactttcagatattgacagctttcgct
aatgcatttcatgcgttgcaccctcttaagattccagcgttcagctatgcttggcttgag
ttggttagtcatagaagttttatgccgaagatgcttaccgggaatagtcagaagggttgg
ccttatatccagcgcttgctagtagacatgtttcaattcatggagccatttttgcggaat
gctgaacttggaccaccggttcattttctttataaaggcactcttagggtattgctagtg
ttacttcatgatttccctgagttcctatgtgactatcattttactttctgtgatatgatt
cctcctagctgcattcagatgcggaatatcatccttagtgcgtttcctcgaaacatgaga
cttccagatccttctactcccaacttgaagattgacttgctggccgaaatcaatcaatcc
ccacgtattctatcagaggtggatggagctcttaaatcaaagcagatgaaggccgatgtg
gatgagtatctcaagacgagacaacagggatcctcgtttctggccggtctgaagcagaaa
ttgcttcttcctcccagtgaagctgcttctgctgggacccgttataatgtgcctttgatc
aactcccttgtactttacgttgggatgcaggccatacagcaacttcaggcaagaagtcct
catgcgcagtcaactgccaatactgttaccttagcagtattcttggtgggagctgcactc
gatattttccagactctgattgtggagttggatactgaagggcgctacctcttcctcaat
gccgttgcaaaccaacttcgttatcctaatacgcacactcattacttttcttttgtcctc
ctgtacttgtttgcggaatcaactcaggaaattatccaggagcagataacaagagtgttg
ttggagcgcctcattgttaatcgacctcatccatggggtctactgataacattcattgaa
cttatcaagaatccaagatataacttttggaaccggtccttcataagatgtgcaccagat
atcgaaagactattcgagtcggtgtctagatcctgcggtggtccaaaatctgcagacgaa
aacatgattcaaaattgggtacctgatacggctcactaa
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integrated database retrieval system
