Cucurbita pepo subsp. pepo (vegetable marrow): 111800064
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Entry
111800064 CDS
T05351
Name
(RefSeq) probable pectate lyase 20
KO
K01728
pectate lyase [EC:
4.2.2.2
]
Organism
cpep
Cucurbita pepo subsp. pepo (vegetable marrow)
Pathway
cpep00040
Pentose and glucuronate interconversions
cpep01100
Metabolic pathways
Brite
KEGG Orthology (KO) [BR:
cpep00001
]
09100 Metabolism
09101 Carbohydrate metabolism
00040 Pentose and glucuronate interconversions
111800064
Enzymes [BR:
cpep01000
]
4. Lyases
4.2 Carbon-oxygen lyases
4.2.2 Acting on polysaccharides
4.2.2.2 pectate lyase
111800064
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GFIT
Motif
Pfam:
Pectate_lyase_4
Beta_helix
NosD
Motif
Other DBs
NCBI-GeneID:
111800064
NCBI-ProteinID:
XP_023539412
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Position
LG08:complement(2379565..2383048)
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AA seq
376 aa
AA seq
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MAMAESGGWIRLFLLVVFMLFVETIARVPKEIPEIENRATEILRSSSNASMAERLEDVEA
LGNKHAVDNPEEVAAAVDMSIRNATARRELGFFSCGTGNPIDDCWRCDPNWQQNRKRLAD
CGIGFGRNAIGGRDGRYYVVTDSGNDDPVSPRPGTLRHAVIQDEPLWIVFKRDMVIQLKQ
ELIMNSFKTIDARGTNVHIANGACITIQFVTNVIVHGLNIHDCKPTGNAMVRSSPNHVGW
RTMADGDAISIFGSSHIWIDHNSLSNCADGLVDAVMGSTAITITNNYFTHHNEVMLLGHS
DSYVRDKQMQVTIAYNHFGEGLIQRMPRCRHGYFHVVNNXHSAFAFWSYLGKEQKTSNVD
IFISRILLSSPCGLVK
NT seq
1131 nt
NT seq
+upstream
nt +downstream
nt
atggcaatggcggaatctggaggatggattcggttgtttcttctcgtggtgttcatgttg
ttcgtcgaaacaattgccagagttcccaaagagattcctgaaattgagaatcgagcaacc
gagatattgcggagctcaagcaatgcatcaatggcagagaggttggaggacgtcgaggct
ctaggtaataagcatgccgtggacaaccctgaagaggtcgctgctgcggttgacatgagc
atacgcaatgccactgcaaggagggagcttggattcttctcgtgtggaaccggcaatcct
attgatgattgctggcgttgcgaccccaattggcaacagaaccgcaaacgtcttgcagat
tgtggcattggctttggccgaaatgccatcggtggtcgcgacggtcgatactacgtcgtc
actgattccggcaacgacgaccctgtcagtccaaggcctggcactttacgacatgccgtc
atccaagatgaacctctctggattgtgttcaaaagagacatggtgatacagctgaaacag
gaactgatcatgaacagtttcaagacaattgatgctcgtggaaccaatgttcacattgct
aatggtgcttgcatcaccatccagtttgtgactaatgttattgtccatggtctaaatatc
catgactgcaagcccactggaaacgccatggtaaggagctcacccaatcacgttgggtgg
agaacaatggctgatggagatgccatttccatttttgggtcaagtcatatttggatcgat
cataattcactctctaactgtgctgatggccttgttgatgctgtcatgggatccactgca
attacaatcaccaacaattacttcactcaccacaatgaggtaatgttattgggacatagt
gattcatacgttagggataaacaaatgcaagtgaccattgcttacaatcactttggagaa
ggactcatccaaagaatgccaaggtgtagacatggatacttccatgtggtgaacaatgan
cattctgcttttgccttttggtcttatctcggaaaagaacagaaaacatctaatgtggat
atatttatttctaggatcttgttatccagtccatgtggacttgtaaaatga
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