Cucurbita pepo subsp. pepo (vegetable marrow): 111800076
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Entry
111800076 CDS
T05351
Name
(RefSeq) replication factor C subunit 3-like
KO
K10756
replication factor C subunit 3/5
Organism
cpep
Cucurbita pepo subsp. pepo (vegetable marrow)
Pathway
cpep03030
DNA replication
cpep03410
Base excision repair
cpep03420
Nucleotide excision repair
cpep03430
Mismatch repair
Brite
KEGG Orthology (KO) [BR:
cpep00001
]
09120 Genetic Information Processing
09124 Replication and repair
03030 DNA replication
111800076
03410 Base excision repair
111800076
03420 Nucleotide excision repair
111800076
03430 Mismatch repair
111800076
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03032 DNA replication proteins [BR:
cpep03032
]
111800076
03036 Chromosome and associated proteins [BR:
cpep03036
]
111800076
03400 DNA repair and recombination proteins [BR:
cpep03400
]
111800076
DNA replication proteins [BR:
cpep03032
]
Eukaryotic type
DNA Replication Elongation Factors
RFC (replication factor C)
111800076
DNA Replication Termination Factors
ELG1-RFC complex
111800076
Chromosome and associated proteins [BR:
cpep03036
]
Eukaryotic type
Sister chromatid cohesion proteins
CTF18-RFC complex
111800076
DNA repair and recombination proteins [BR:
cpep03400
]
Eukaryotic type
SSBR (single strand breaks repair)
MMR (mismatch excision repair)
RFC (replication factor C)
111800076
Check point factors
HRAD17(Rad24)-RFC complex
111800076
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DNA_pol3_delta
UBN_AB
HYPK_UBA
COMPASS-Shg1
DUF4011
Motif
Other DBs
NCBI-GeneID:
111800076
NCBI-ProteinID:
XP_023539426
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Position
LG08:2944940..2951568
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AA seq
493 aa
AA seq
DB search
MVGSIEVKVKESSHCVEVNLSQTKGFEKQVIDQLIKETQSPLPCNHARCRGILLCEADQL
SNETLMYVKWAIERNKGCSKIFFCCSDVSKLLLLSSFCTHVHLSPPSKQEIVEVLEYIAK
QQEFDLSRRMAERIADNSKNNLRQAIRSLEASWKKSRLFEEDENKLLTGWEDDIADVAKK
IVEEQSPKHCVTWQSEMVGSIEVKVKESSHCVEVNLSQTKGFEKQVIDQLIKETQSPLPC
NHARCRGILLCEADQLSNETLMYVKWAIERNKGCSKIFFCCSDVSKLLLLSSFCTHVHLS
PPSKQEIVEVLEYIAKQQEFDLSRRMAERIADNSKNNLRQAIRSLEASWKKSRLFEEDEN
KLLTGWEDDIADVAKKIVEEQSPKQLYIVRGKLKKLIEYDVSPNFIFKTLVDELKKFLDE
ELQRRVESFYADYNKMEEKPFVTEKGYGEEAVIKELHDPMRKNVNHFLKIEEFIAKFMSC
YKGEANKKNYLPT
NT seq
1482 nt
NT seq
+upstream
nt +downstream
nt
atggtggggagcattgaagtaaaggtgaaggaatcatcccactgtgtggaagtcaatctc
tcacaaaccaaaggctttgagaaacaagtcattgaccagctcatcaaagaaactcaatcc
cctttgccatgtaatcatgccagatgtcgagggatattgttatgtgaagcagatcagcta
tcaaatgaaaccctaatgtacgtaaaatgggcaattgagaggaacaaagggtgcagcaaa
atcttcttctgttgctctgatgtctctaagcttcttcttcttagctctttctgcactcac
gttcatctctccccaccttcaaagcaagagatagtggaagttctggaatacatagcaaaa
caacaagaattcgacttgtcgcgtcgaatggcagagagaatcgccgacaattccaagaac
aacctccgacaagccattcgatctttggaggcttcgtggaaaaaaagtcgattgtttgaa
gaagatgagaataaattgttgacgggttgggaagatgatattgcagatgttgctaagaag
atcgtcgaggagcaaagcccaaaacactgtgtgacgtggcagagtgaaatggtggggagc
attgaagtaaaggtgaaggaatcatcccactgtgtggaagtcaatctctcacaaaccaaa
ggctttgagaaacaagtcattgaccagctcatcaaagaaactcaatcccctttgccatgt
aatcatgccagatgtcgagggatattgttatgtgaagcagatcagctatcaaatgaaacc
ctaatgtacgtaaaatgggcaattgagaggaacaaagggtgcagcaaaatcttcttctgt
tgctctgatgtctctaagcttcttcttcttagctctttctgcactcacgttcatctctcc
ccaccttcaaagcaagagatagtggaagttctggaatacatagcaaaacaacaagaattc
gacttgtcgcgtcgaatggcagagagaatcgccgacaattccaagaacaacctccgacaa
gccattcgatctttggaggcttcgtggaaaaaaagtcgattgtttgaagaagatgagaat
aaattgttgacgggttgggaagatgatattgcagatgttgctaagaagatcgtcgaggag
caaagcccaaaacagctgtatattgttcgtggaaagctaaaaaagcttattgaatacgat
gtctcccccaatttcatttttaagactctagtagacgaattaaagaagttcttggacgaa
gaattacagcgtcgagtcgaaagtttctatgccgattataacaaaatggaggaaaaacca
tttgtcactgaaaaaggctatggggaagaagcagtgatcaaagagctgcatgatcctatg
agaaagaacgttaaccacttcttgaagattgaagaattcatagcgaagttcatgagctgc
tataagggagaagcaaataagaaaaattatttgccgacatga
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