Cucurbita pepo subsp. pepo (vegetable marrow): 111802513
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Entry
111802513 CDS
T05351
Name
(RefSeq) probable pectate lyase 5
KO
K01728
pectate lyase [EC:
4.2.2.2
]
Organism
cpep
Cucurbita pepo subsp. pepo (vegetable marrow)
Pathway
cpep00040
Pentose and glucuronate interconversions
cpep01100
Metabolic pathways
Brite
KEGG Orthology (KO) [BR:
cpep00001
]
09100 Metabolism
09101 Carbohydrate metabolism
00040 Pentose and glucuronate interconversions
111802513
Enzymes [BR:
cpep01000
]
4. Lyases
4.2 Carbon-oxygen lyases
4.2.2 Acting on polysaccharides
4.2.2.2 pectate lyase
111802513
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Motif
Pfam:
Pectate_lyase_4
Beta_helix
Motif
Other DBs
NCBI-GeneID:
111802513
NCBI-ProteinID:
XP_023542680
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Position
LG09:8789695..8791648
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AA seq
410 aa
AA seq
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MAPPTLFLSLLSLFLLSSLSTTLSAAPASVQNPELVVEEVHRSIINATKRRNLGYLSCGT
GNPIDDCWRCDSNWEKNRQRLADCGIGFGKNAIGGRDGKIYVVTDSGDDDPVNPKPGTLR
YAVIQDEPLWIIFARDMVIRLKEELIMNSFKTIDGRGASVHIAGGPCITIQYVTNIIIHG
LNIHDCKQGGNTDVRDSPRHFGFRTISDGDGVSIFGGSHVWVDHCSLSNCKDGLIDAIHG
STAITISNNYMTHHDKVMLLGHSDSYTQDKNMQVTIAFNHFGEGLVQRMPRCRHGYFHVV
NNDYTHWEMYAIGGSAAPTINSQGNRFVAPNDRFSKEVTKYEDAPESEWKHWNWRSEGDM
MVNGAFFTASGAGASSSYARASSLGARPSSLVGTITTNAGALNCRKGSRC
NT seq
1233 nt
NT seq
+upstream
nt +downstream
nt
atggcgccgccaacactttttctctctctactctctctcttcctcctttcctctctctcc
accaccctctccgccgctccggcctccgtacagaaccccgaactcgtcgttgaagaagta
cacaggagcataatcaacgcgacgaaacggaggaatttgggatatctttcatgtggaacg
ggaaatccgatcgacgattgctggcggtgcgattcaaattgggagaagaatcgccagaga
ttagccgactgtggaatcggattcggcaaaaacgccatcggcggccgtgacggtaaaatc
tacgtcgtcaccgattccggcgacgacgatcccgttaacccaaaaccgggaactctccgg
tacgccgtaatccaagacgaacccctttggatcatcttcgctcgcgatatggtaatccga
ttaaaagaggaactaatcatgaactcattcaaaaccatcgacggccgtggcgccagcgtc
cacatcgccggcggcccctgcattacaattcaatacgtaacgaacatcataatccatggc
ttgaacattcacgattgcaagcaaggaggaaacacagacgtgagagattccccaagacat
tttgggttccgaactatctccgacggcgatggcgtttcaatcttcggcggcagccatgtc
tgggtggatcattgctcgttgtcgaactgtaaggatgggttgatcgatgcgattcatggg
tcgacggcgattacgatttcgaacaattacatgacgcatcatgataaagtaatgttgctt
ggacacagtgattcgtatactcaagacaagaatatgcaggtcaccatagcttttaaccac
ttcggtgaagggcttgttcaacgaatgcccagatgccgacatgggtattttcacgtggtg
aacaatgactacacgcattgggaaatgtacgccattggaggaagtgctgctccgaccatt
aacagtcaaggcaacagatttgtagctccaaatgacagattcagcaaagaggtgacaaag
tacgaggatgcgccggagagtgagtggaagcattggaattggaggtcggaaggggatatg
atggtgaacggtgcgtttttcacggcttccggcgccggagcgtcgtcgagctatgctaga
gcgtcgagcttaggtgcgaggccgtcgtcgctggtcgggacaattacgaccaatgcgggt
gcactgaactgcagaaagggctcccgctgctga
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