Cucurbita pepo subsp. pepo (vegetable marrow): 111807826
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Entry
111807826 CDS
T05351
Name
(RefSeq) probable pectate lyase 1
KO
K01728
pectate lyase [EC:
4.2.2.2
]
Organism
cpep
Cucurbita pepo subsp. pepo (vegetable marrow)
Pathway
cpep00040
Pentose and glucuronate interconversions
cpep01100
Metabolic pathways
Brite
KEGG Orthology (KO) [BR:
cpep00001
]
09100 Metabolism
09101 Carbohydrate metabolism
00040 Pentose and glucuronate interconversions
111807826
Enzymes [BR:
cpep01000
]
4. Lyases
4.2 Carbon-oxygen lyases
4.2.2 Acting on polysaccharides
4.2.2.2 pectate lyase
111807826
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GFIT
Motif
Pfam:
Pectate_lyase_4
Beta_helix
Motif
Other DBs
NCBI-GeneID:
111807826
NCBI-ProteinID:
XP_023549475
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Position
LG12:619652..623824
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AA seq
431 aa
AA seq
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MAALSKWSSLSLFALAMVFFVTIAVIRKGETSEVRVQNDDMEEELNNEHAVDNPDEIAAS
VEMSIRNSTERRKLGYFSCGTGNPIDDCWRCDSNWHRNRKRLAECGIGFGRNAIGGRDGR
FYVVTDSSDHDPVNPKPGTLRHAVIQEKPLWIVFKRDMVIQLKQELIMNSFKTIDARGVN
VHIANGACITIQFVTNIIIHGLHIHDCKPTGNAMVRSSPTHFGWRTMADGDAISIFGSSH
IWIDHNSLSNCADGLIDAIMGSTAITISNNHFTHHNEVMLLGHSDSYTKDKQMQVTIAYN
HFGKGLIQRMPRCRHGYFHVVNNDYTHWEMYAIGGSANPTINSQGNRYAAPSNPFAKEVT
KRVETPESKWKGWNWRSEGDMLLNGAYFTPSGAGASASYARASSLGAKSASMVGSITSSA
GSLPCRRGHPC
NT seq
1296 nt
NT seq
+upstream
nt +downstream
nt
atggcggcacttagtaagtggtcttctctgtctctgtttgcccttgcaatggtgttcttc
gtaacaatcgctgtgattcgcaagggagagacgtctgaagttagggtgcagaatgatgat
atggaggaagaactcaacaatgagcatgctgtggataatcctgacgagattgctgcctct
gttgagatgagcatccgtaatagcactgaaaggaggaagttgggatacttctcttgtgga
acaggcaatcccattgatgactgctggcgttgtgactcaaattggcaccgaaaccgtaaa
cgtctagctgaatgtggcatcgggtttggtcggaatgctattggtggtcgtgacggtcgt
ttctatgtcgttactgattcgagtgaccatgatccagtgaacccgaagccagggactctt
cgtcatgctgtgattcaagagaaacctctttggattgtgttcaaaagagacatggtgatt
caattgaaacaagaactcatcatgaacagtttcaaaaccattgatgctcgaggagtcaat
gtacatattgccaatggcgcttgcatcacaatccagtttgtgactaacatcattatccat
ggtcttcacatccatgattgcaagcccacagggaacgccatggtgagaagctctccaact
cattttgggtggagaaccatggctgatggagatgccatttccatctttggatccagccat
atatggattgaccacaattcgctctctaattgtgctgatggacttattgatgccattatg
ggctcaaccgctatcacaatctccaacaaccacttcactcaccacaatgaggtgatgctt
ctaggccatagtgattcctacacaaaggacaagcaaatgcaagtcaccattgcttataac
cattttggcaaggggctcattcaaagaatgccaaggtgtaggcatggctatttccatgtg
gtgaacaatgactacactcattgggagatgtatgccattggtggtagtgccaaccccacc
atcaatagtcaaggcaacagatatgcagctccatccaacccttttgccaaagaggtgact
aagcgagtcgaaacgccggagagcaaatggaaaggctggaattggagatcagaaggagat
atgttactaaacggtgcatatttcaccccatccggcgccggagcttcagcaagctatgcc
agagcctcaagcttaggagccaaatctgcttccatggtaggctccatcacttcttctgca
ggttctctcccttgccgccgaggccatccctgctag
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