Clavibacter phaseoli: FGI33_13000
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Entry
FGI33_13000 CDS
T08435
Name
(GenBank) RecQ family ATP-dependent DNA helicase
KO
K03654
ATP-dependent DNA helicase RecQ [EC:
5.6.2.4
]
Organism
cpha
Clavibacter phaseoli
Pathway
cpha03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
cpha00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
FGI33_13000
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
cpha03019
]
FGI33_13000
03400 DNA repair and recombination proteins [BR:
cpha03400
]
FGI33_13000
Enzymes [BR:
cpha01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.4 DNA 3'-5' helicase
FGI33_13000
Messenger RNA biogenesis [BR:
cpha03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Helicases
FGI33_13000
DNA repair and recombination proteins [BR:
cpha03400
]
Prokaryotic type
DSBR (double strand breaks repair)
NHEJ (non-homologous end-joining)
SHDIR (short-homology-dependent illegitimate recombination)
Supressor
FGI33_13000
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DEAD
Helicase_C
RecQ_Zn_bind
ResIII
DUF3553
HEM4
MarR_2
PcrA_UvrD_tudor
DUF7342
Motif
Other DBs
NCBI-ProteinID:
UKF37934
LinkDB
All DBs
Position
complement(2768356..2770170)
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AA seq
604 aa
AA seq
DB search
MKQNRTAAGTTRTTRTTTRTAHDRTAEDRPVEERPAAEDPAIVPEPAPGPEPEDALRVAR
ESFGWDELHDGQVRTIGPLVRGRDALVVMPTGYGKSAIYQVATVLMEGLTVVVSPLIALQ
ADQVQNLEDAPAAPPARVINSTIRGKALDEAWATVEEPGARIVFLTPEQLARDAVVERLV
ARGVSLVVIDEAHCVASWGHDFRPDYLGLGGVIDALGHPPTVAMTATGSTPIRVEIEERL
GLRDPFVLSSGFDRPNIRLEVRRHTEESEKRRAIVAHVVEQTQPGLVYVATRKDAEDYAD
EIRAAGLRVDAYHAGLPAAERERVQTAFHEDDVDVVVATSAFGMGIDKPTVRYVIHAAPP
ESVDAYYQEVGRAGRDGEPAVGILHYRAEDLGLRRFFAARTPRPASLRDVYAAVAVAGVD
GPVRPAAVAERAGMSARTVGGVLNLLVDAGVLGSDRDGAFVREELDPREAASRAKEVAQE
RERIEVSRLDMMRGYAETQQCRRQYLLGYFGEESPERCGNCDACDRLDQDDAHDEAMGAT
DDGDATAAASDEMFPAQSQVTHAEWGPGTVMSTEEDRITVFFEKEGYRVLSRKLVEEGSL
LQPA
NT seq
1815 nt
NT seq
+upstream
nt +downstream
nt
gtgaagcagaaccgcaccgcggcgggaacgacccgcaccacccgcacgaccacccgcaca
gcgcacgaccgcacggccgaggaccggcccgtcgaggagcggcccgccgccgaggatccg
gccatcgtcccggagcccgcgccgggcccggagcccgaggacgcgctccgcgtcgcccgc
gagtccttcggctgggacgagctgcacgacggccaggtacgcacgatcggcccgctcgtc
cgcgggcgcgacgcgctcgtcgtgatgcccacgggctacggcaagtccgccatctaccag
gtcgcgaccgtgctgatggagggcctcaccgtcgtcgtgtccccgctcatcgcgctgcag
gccgaccaggtgcagaacctcgaggacgcgcccgccgcgccgcccgcgcgcgtcatcaac
agcacgatccgcgggaaggcgctcgacgaggcgtgggcgaccgtggaggagccgggcgcg
cggatcgtgttcctcacgcccgagcagctggcccgcgacgcggtcgtcgagcggctcgtg
gcgcgcggggtgtcgctcgtggtgatcgacgaggcgcactgcgtcgcatcgtggggccac
gacttccggcccgactacctggggctcggcggcgtgatcgacgcgctcgggcacccgccg
accgtcgcgatgacggcgacgggatccacgcccatccgcgtcgagatcgaggagcggctg
gggctgcgcgacccgttcgtgctgtcctcgggcttcgaccggccgaacatccggctcgag
gtgcgccggcacaccgaggagtccgagaagcgtcgcgcgatcgtcgcgcacgtggtggag
cagacgcagccgggcctcgtctacgtcgcgacgcgcaaggacgccgaggactacgccgac
gagatccgcgcggccggcctccgcgtcgacgcctaccacgcgggcctgccggcggccgag
cgcgagcgcgtgcagaccgcgttccacgaggacgacgtggacgtggtcgtcgcgacgagc
gcgttcggcatgggcatcgacaagccgaccgtgcgctacgtgatccacgcggcgccgccc
gagtcggtcgacgcgtactaccaggaggtcgggcgcgcggggcgcgacggggagccggcg
gtcgggatcctgcactaccgcgccgaggacctcggcctccgccgcttcttcgcggcgcgc
acgccccggccggcgagcctccgcgacgtgtacgcggcggtcgcggtggcgggcgtcgac
ggacccgtgcggcccgccgcggtcgccgagcgcgccgggatgtcggcgcgcacggtgggc
ggcgtgctcaacctgctcgtggacgcgggcgtgctcggatccgatcgcgacggcgccttc
gtgcgcgaggagctggatccgcgcgaggccgcgtcccgcgcgaaggaggtcgcgcaggag
cgcgagcgcatcgaggtgtcgcggctcgacatgatgcgcggctacgccgagacgcagcag
tgccgccgccagtacctgctcggctacttcggcgaggagtcgccggagcgctgcggcaac
tgcgacgcgtgcgaccggctcgaccaggacgatgcgcacgacgaggcgatgggcgcgacg
gacgacggcgacgcgaccgctgccgcgtccgacgagatgttccccgcgcagtcgcaggtc
acccacgccgagtgggggccgggcaccgtgatgagcacggaggaggaccggatcaccgtc
ttcttcgagaaggaggggtaccgcgtgctgtcgcggaagctcgtggaggaggggtcgctg
ctgcagccggcgtga
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