Chrysemys picta (western painted turtle): 101948832
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Entry
101948832 CDS
T04662
Symbol
CNOT1
Name
(RefSeq) CCR4-NOT transcription complex subunit 1 isoform X1
KO
K12604
CCR4-NOT transcription complex subunit 1
Organism
cpic
Chrysemys picta (western painted turtle)
Pathway
cpic03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
cpic00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
101948832 (CNOT1)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
cpic03019
]
101948832 (CNOT1)
Messenger RNA biogenesis [BR:
cpic03019
]
Eukaryotic type
mRNA surveillance and transport factors
mRNA cycle factors
P-body specific factors
101948832 (CNOT1)
mRNA degradation factors
3'-5' decay
Ccr4-NOT complex
101948832 (CNOT1)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Not1
CNOT1_CAF1_bind
NOT1_connector
ARM_Cnot1
CNOT1_TTP_bind
DUF3819
Motif
Other DBs
NCBI-GeneID:
101948832
NCBI-ProteinID:
XP_005309562
LinkDB
All DBs
Position
15:958900..1009542
Genome browser
AA seq
1687 aa
AA seq
DB search
MYMAVYNLHFFIQIDPLAGMASLSLGGSAVPHTQSMQGFPPNLGSAFSTPQSPAKAFPPL
STQNQTTAFSGIGGLSSQLPVGGLTTGSLTGIGTGALGLPAVNNDPFVQRKLSTSGLNQP
TFQQSKMKPSDLSQVWPEANQHFSKEIDDEANSYFQRIYNHPPHPTMSVDEVLEMLQRFK
DSNIKREREVFNCMLRNLFEEYRFFPQYPDKELHITACLFGGIIEKGLVTYMALGLALRY
VLEALRKPFASKMYYFGIAALDRFKNRLKDYPQYCQHLASISHFIQFPHHLQEYIEYGQQ
SRDPPVKMQGSITTPGSIALAQAQAQAQAPAKAPLAGQVSTIVTTSTTTTTVAKTITITR
PTGVSFKKDVPPSINTTNIDTLLVATDQTERIVEPPENVQEKIAFIFNNLSQSNMTQKVE
ELKETVKEEFMPWVSQYLVMKRVSIEPNFHSLYSNFLDTLKNPEFNKMVLNETYRNIKVL
LTSDKAAANFSDRSLLKNLGHWLGMITLAKNKPILHTDLDVKSLLLEAYVKGQQELLYVV
PFVAKVLESSVRSVVFRPPNPWTMAIMNVLAELHQEHDLKLNLKFEIEVLCKNLALDINE
LKPGNLLKDKDRLKNLDEQLSAPKKDVKQPEELPPITTTTASTTPATNTTCTASVPPQPQ
YSYHDINVYSLGGLAPHITLNPTIPLFQAHPQLKQCVRQAIERAVQELVHPVVDRSIKIA
MTTCEQIVRKDFALDSEESRMRVAAHHMMRNLTAGMAMITCREPLMMSIATNLKNSFATA
LRAASPQQREMMEQAAAQLAQDNCELACCFIQKTAVEKAGPEMDKRLATEFELRKHARQE
GRRYCDPVVLTYQAERMPEQIRLKVGGVDPKQLAVYEEFARNVPGFLPTNDLTQPTGFLA
QPMKQAWATDDVAQIYDKCMTELEQHLQSIPHTLAMNPQAQALRSLLEAVVVARNSRDAI
AALGLLQKAVEGLLDATSGADADLLLRYRECHLLVLKALQDGRAYGSPWCNKQITRCLIE
CRDEYKYNVEAVELLIRNHLVTMQQYDLHLAQSMENGLNYMAVAFAMQLVRILLVDERSV
AHVTEADLFHTIETLMRINAHSRGNAPEGLPQLMEVVRSNYEAMIDRAHGGPNFMMHSGI
SQASEYDDPPGLREKAEYLLREWVNLYHSAAAGRDSTKAFSAFVGQVELLERKMHQQGIL
KTDDLITRFFRLCTEMCVEISYRAQAEQQHNPAANPTMIRAKCYHNLDAFVRLIALLVKH
SGEATNTVTKINLLNKVLGIVVGVLLQDHDVRQSEFQQLPYHRIFIMLLLELNAPEHVLE
TINFQTLTAFCNTFHILRPTKAPGFVYAWLELISHRIFIARMLAHTPQQKGWPMYAQLLI
DLFKYLAPFLRNVELTKPMQILYKGTLRVLLVLLHDFPEFLCDYHYGFCDVIPPNCIQLR
NLILSAFPRNMRLPDPFTPNLKVDMLSEINIAPRILTNFTGVMPPQFKKDLDSYLKTRSP
VTFLSDLRSNLQVSNEPGNRYNIQLINALVLYVGTQAIAHIHNKGSTPSMSTITHSAHMD
IFQNLAVDLDTEGRYLFLNAIANQLRYPNSHTHYFSCTMLYLFAEANTEAIQEQITRVLL
ERLIVNRPHPWGLLITFIELIKNPAFKFWNHEFVHCAPEIEKLFQSVAQCCMGQKQAQQV
MEGTGAS
NT seq
5064 nt
NT seq
+upstream
nt +downstream
nt
atgtatatggctgtttataatctgcatttctttattcagattgacccgcttgctgggatg
gcatctcttagtttaggtggttcagctgttccacatacccagagtatgcaaggcttccct
ccaaatttgggttctgctttcagtacacctcagtcaccagcaaaagcatttcctcccctt
tccacccaaaatcagacaactgctttcagtggcattggaggactctcttcacaacttcca
gtaggtggtcttactacgggtagcctaactggtatagggactggggcccttggcctccct
gcagtgaacaacgatccattcgtgcaaaggaaactgagtacatctggactgaaccagcct
acattccagcagagtaagatgaaaccttctgacttatctcaggtgtggccagaggcaaat
cagcactttagtaaagaaatagatgatgaagcaaacagctactttcagcgcatttataat
catccaccacaccccaccatgtctgtagatgaggtattagaaatgctacagaggtttaag
gactccaacattaagcgggaacgagaagtgtttaactgtatgctgaggaacttgtttgag
gagtaccgttttttcccccaatacccagacaaagagctgcacataacagcctgcctcttt
ggtgggataatagagaaaggactggttacttacatggcattgggcctggccctgcgctat
gttcttgaagccttacgaaagccttttgcatccaaaatgtactattttggtattgctgca
ctagatagatttaaaaatagattgaaggactatccccagtattgtcagcacttggcttct
attagtcactttatacagttccctcatcacctacaggagtacattgaatatggacagcaa
tccagagatcctcctgtgaagatgcagggttcaatcaccacccctggaagtattgcactt
gcccaggctcaggcccaggcccaggccccagcaaaagctcctcttgctggccaagtcagc
actatagtaaccacctccaccaccaccaccactgtggcaaaaaccattacaatcacccga
ccaactggagtcagcttcaaaaaggatgtgccgccttccattaatactaccaacatcgat
accttgctagtggcaacagatcaaactgagagaattgtggagcccccagaaaatgttcag
gaaaaaattgctttcatattcaataatctgtctcaatcaaatatgacacagaaggttgag
gagctgaaggaaactgtgaaagaagagttcatgccttgggtttcacaatatcttgtgatg
aagagagtcagtattgagccaaattttcacagcctatattcaaatttccttgacactctt
aagaatccagagtttaacaagatggttctgaatgaaacctacagaaatatcaaggtgcta
ctgacatcagataaagctgcagccaacttctctgaccgttcccttctgaagaaccttggc
cactggctgggaatgatcaccttggctaaaaataaacccatcttgcacacggatttggat
gtgaaatcgttacttctggaggcttatgttaaggggcaacaggagttgctttatgtagta
ccatttgttgccaaagtcttagaatccagtgtcagaagtgtggttttcaggcctccaaac
ccctggacgatggcaatcatgaacgttttagctgagctgcatcaagaacatgacttaaaa
ctaaatctgaaatttgagattgaggtgctctgcaagaaccttgcactagacatcaatgag
ctgaaacctggaaacctcctgaaagacaaggatcggttgaaaaatttggacgaacagctg
tctgctccaaagaaggatgtaaaacagccggaggagctaccaccaatcacaacaaccact
gcttctacaaccccagctactaacaccacttgtacagcatccgttcctccacaacctcag
tacagttaccatgacatcaacgtctactctctgggagggctggctccacacattactcta
aatccgactattccactgttccaggcccacccacagctaaagcagtgtgtgcgtcaagct
atagagcgtgcagtgcaggagcttgtccatccagtggtagaccggtccattaagattgcc
atgactacctgtgaacagatagtcagaaaggactttgcactggattcagaggagtcacgc
atgcgtgtagcggcacaccacatgatgcggaacctgactgctggtatggccatgattacc
tgcagggaacctctgatgatgagcattgctaccaacttgaagaacagttttgctactgca
ctgcgggcagcatccccacagcagagggagatgatggagcaggcagctgcacagttagct
caggataactgtgaattagcatgttgcttcattcagaagacagctgtggaaaaggcaggc
cctgaaatggacaagaggctggcaactgaatttgagctcagaaagcatgcaaggcaagag
ggtcgtcggtactgtgatcctgttgtattaacttaccaggctgaacggatgccagagcag
atcagattgaaggttggtggtgtggacccaaaacagctggctgtttatgaagagtttgca
cgcaatgtccccggcttcttgcctaccaatgatttaacccagcccacaggattcttggct
cagcctatgaagcaagcttgggctacagatgatgtagcacagatctatgataaatgtatg
acagaactggaacaacacctacaatccataccacataccctggccatgaacccacaagct
caagccttacgcagcctgttggaggctgtagtagtggctcgtaactcccgtgatgccata
gccgcgcttggactgctccagaaggctgttgagggcttactggatgccaccagtggtgca
gatgctgacctcctgctccgctaccgtgagtgtcacctacttgtactgaaagctctgcag
gatggccgtgcctatgggtctccatggtgtaacaagcagatcaccagatgcttgattgaa
tgccgggatgagtataagtacaatgtagaagctgtggagctgctaatccgcaatcacctt
gttaccatgcagcagtacgatcttcacttggcacagtcaatggagaatggcttgaactac
atggcagtggcatttgccatgcagttggtgaggatcttgttggtggatgagaggagtgta
gcccacgtaacagaggcagatctattccacaccattgagactctgatgaggattaatgct
cactccagagggaatgctccagaagggttaccccagttgatggaagtggtccgatccaac
tatgaagcaatgattgaccgtgctcatggaggccctaacttcatgatgcattctgggatc
tcccaagcctctgagtatgatgatccaccaggcctgagggagaaggcagagtatctactg
agggaatgggtgaatctctaccattcagctgcagctggccgtgacagtaccaaagctttc
tctgcgtttgttggacaggtagagcttttggaaagaaagatgcaccagcaaggaatcctg
aaaacggatgacctgataactcggttctttcgtctttgcactgaaatgtgtgttgaaatc
agctatcgtgctcaggccgagcagcagcacaatccagccgccaatcccaccatgatcaga
gccaaatgctaccacaacctggatgcctttgtgcggcttattgcactgctagtgaagcac
tctggggaggcaaccaacacggtcacaaagattaacctactgaacaaggtgcttggtata
gtggtgggagttctgctccaggaccatgatgttcggcagagtgagtttcagcagcttcct
taccaccgcattttcatcatgttgctgttagaattaaatgctcctgaacatgtgctggag
accatcaacttccagacccttacagccttctgtaacacatttcacatcctgaggcctacg
aaagctccgggttttgtttatgcctggctggaactgatttcccatcggatatttattgcg
agaatgctggcgcatacaccacagcagaaggggtggcctatgtatgcccagctgctaatt
gatctcttcaagtacttggctcctttccttagaaatgtggaactcactaaacctatgcaa
attctctacaagggcactctgcgtgtgttgctggtcttattgcatgatttcccagaattc
ctttgtgactaccactatgggttctgtgatgtgatcccaccaaactgtatccaactaagg
aatctgatcctgagtgccttcccacgtaacatgaggcttccagaccctttcactcccaac
ctaaaagtggacatgttaagtgagattaatattgcaccacgaatactcaccaactttact
ggagtgatgccacctcagttcaaaaaagatttggattcctatctcaaaactcgctcgcct
gtcactttcctgtctgacttgcgcagcaatctacaggtatccaatgaacctggcaatcgc
tacaacatccagctgattaacgcactggtgctctacgtaggcactcaggctattgcacat
attcacaacaaaggcagcacaccctcgatgagcacgatcacccattcagctcacatggac
attttccagaacttggctgtggatctggacacagaaggtcggtacctcttcttgaatgca
attgccaatcagctgcggtacccaaacagccatacacactatttcagttgtaccatgctt
tacctatttgcagaggccaatactgaggctatccaggaacagatcacgagggtactgttg
gaacgactgattgtaaatagacctcacccatggggtctcctcattaccttcattgagctg
ataaaaaatccagcgtttaaattctggaaccatgagtttgttcactgtgctccggaaatt
gagaagttgtttcagtcagttgcacagtgctgcatggggcagaagcaggcacagcaagtg
atggaaggcactggtgccagttag
DBGET
integrated database retrieval system
