Chryseobacterium piperi: CJF12_17215
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Entry
CJF12_17215 CDS
T05071
Symbol
rpoB
Name
(GenBank) DNA-directed RNA polymerase subunit beta
KO
K03043
DNA-directed RNA polymerase subunit beta [EC:
2.7.7.6
]
Organism
cpip
Chryseobacterium piperi
Pathway
cpip03020
RNA polymerase
Brite
KEGG Orthology (KO) [BR:
cpip00001
]
09120 Genetic Information Processing
09121 Transcription
03020 RNA polymerase
CJF12_17215 (rpoB)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
cpip03021
]
CJF12_17215 (rpoB)
03400 DNA repair and recombination proteins [BR:
cpip03400
]
CJF12_17215 (rpoB)
Enzymes [BR:
cpip01000
]
2. Transferases
2.7 Transferring phosphorus-containing groups
2.7.7 Nucleotidyltransferases
2.7.7.6 DNA-directed RNA polymerase
CJF12_17215 (rpoB)
Transcription machinery [BR:
cpip03021
]
Prokaryotic type
Bacterial type
RNA polymerase
Core subunits
CJF12_17215 (rpoB)
DNA repair and recombination proteins [BR:
cpip03400
]
Prokaryotic type
SSBR (single strand breaks repair)
NER (nucleotide excision repair)
TCR (transcription coupled repair) factors
DNA-directed RNA polymerase complex (RNAP)
CJF12_17215 (rpoB)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RNA_pol_Rpb2_6
RNA_pol_Rpb2_2
RNA_pol_Rpb2_3
RNA_pol_Rpb2_7
RNA_pol_Rpb2_45
RNA_pol_Rpb2_1
KOW2_Spt5
Motif
Other DBs
NCBI-ProteinID:
ASW75838
UniProt:
A0A086BAX5
LinkDB
All DBs
Position
3894685..3898506
Genome browser
AA seq
1273 aa
AA seq
DB search
MSKTTATTRGNQRINFSSAKGKIITPDFLDIQLESFKEFFQLDTLPEDRKKEGLHKTFQE
NFPITDSRNQFVLEFLDYLVDSPRYSIDECVERGLTYSVPLKARLKLYCTDPEHEDFQTV
VQDVYLGPVPYMTPSGSFIINGAERVIVTQLHRSPGVFFGQTYHANGTKLYYSRIIPFKG
SWMEFTTDINSVMYAYIDRKKKLPLTTLLRAIGFESDKDILQIFDLAEEVKVSKAALKKV
EGRTLAARVLNTWFEDFVDEDTGEVVSIERNEIILDRETILEKEHLDLILDAGVKSILIH
KENSNEFSIIQNTLQKDPTNSEKEAVEYIYRQLRNADPPDEETARGIIEKLFFSEQRYSL
GEVGRYRLNKKLGLNIPTTTEVLTKEDIIAIVRHLIELVNSKAEVDDIDHLSNRRIKTVG
EQLAGQFGVGLSRIARTIKERMNVRDNEIFTPLDLVNAKTLTSVINSFFGTNQLSQFMDQ
TNPLSEITHKRRLSALGPGGLSRERAGFEVRDVHHTHYGRICPIETPEGPNIGLISSLGI
YAKINNLGFIETPYRKVENSKIDLTSDPIYLNAEDEEDKVIAQANVELNDNGEFVTDRII
ARLDGDYPVVEPQQVDLIDVAPNQISGISASLIPFLEHDDANRALMGSNMMRQAVPLLKP
QAPIVGTGLEQQVARDSRILINAEGTGTVEYVDADKITIKYERSDDEDLVSFESATKTYN
LTKFRKTNQSTTITLRPNVRVGETVQKGQVLCDGYATENGELALGRNLVVAFMPWKGYNF
EDAIVINEKVVREDWFTSIHVDEYSLEVRDTKLGMEELTADIPNVSEEATKDLDENGMIR
IGAEVKPGDIMIGKITPKGESDPTPEEKLLRAIFGDKAGDVKDASLKADSSLRGVVINKK
LFSRNIKDKKKRTEEKLKLEEIENTYKAKFDELRNTLIEKLNTLVSGKTSQGVTNDLDEE
IIGKGVKFTHKLLTSVEDYVNVSGADWTVDNDKNELIKQLIHNYKIKFNDIQGVKNREKF
AISIGDELPAGIMKLAKVYIAKKRKLNVGDKMAGRHGNKGIVSRIVREEDMPFLEDGTPV
DIVLNPLGVPSRMNIGQIYETVLGWAGQKLGMTFATPIFDGATLEQITEYTEKASLPKFG
NTHLYDGGTGERFTQPATVGVIYMLKLGHMVDDKMHARSIGPYSLITQQPLGGKAQFGGQ
RFGEMEVWALEAFGASNILREILTVKSDDVIGRAKTYEAIAKGESMPEPGIPESFNVLLH
ELQGLGLDVRLEE
NT seq
3822 nt
NT seq
+upstream
nt +downstream
nt
atgagtaaaacaacagcaacaactagggggaatcagagaattaacttctcatcagcgaaa
ggaaaaattatcactccagacttcttggatatccaattagagtcttttaaagagtttttc
cagcttgatacccttcctgaagacaggaaaaaagaaggtctgcataagactttccaggaa
aatttcccaattacagactctagaaaccaattcgtattggaatttttagattatctggta
gattctccacgttattcaatagatgagtgtgtagaaagaggattgacgtattcagttcct
ctaaaagcaaggcttaaattgtattgtacagaccctgaacatgaggatttccaaaccgta
gttcaggatgtatatttaggtccggtgccttacatgacgcctagtggatctttcatcatc
aatggtgcagagagagttatcgttacgcagttacaccgttcacctggtgtattcttcgga
cagacttaccacgctaacggaactaagctttactattcaagaattattccttttaaagga
tcttggatggaatttactacggatatcaacagcgtaatgtatgcgtatattgaccgtaag
aaaaaattaccattaactactttattaagagctatcggatttgaatctgataaagatatc
cttcagatcttcgaccttgcggaagaagtgaaagtttctaaagctgcccttaaaaaagtt
gaaggaagaacattggctgcgagagtattgaacacttggttcgaggatttcgtagacgaa
gatacaggtgaggttgtttctattgaaagaaacgaaatcatcctggatagagaaactatt
cttgaaaaagaacacttagatcttattcttgatgctggagtgaaatcgatcctgattcac
aaagaaaacagcaatgaattctctatcatccagaatacattacaaaaagaccctactaac
tctgaaaaagaagcagtagaatatatttaccgtcagttaagaaatgcagatccgccagat
gaggaaacggcaagaggaattattgaaaaattattcttctctgagcagagatactcacta
ggagaagtaggacgttacagattgaacaaaaagctaggtctaaatatccctacaacaact
gaagttcttacaaaagaagatatcattgcgatcgtaagacatttgatcgaattggtaaac
tctaaagcggaggttgatgatattgaccacttatcaaacagaagaattaagactgttggt
gagcaattagcaggacagttcggtgtaggtctttcaagaattgcaagaacgatcaaagag
agaatgaacgttagagataacgaaatctttactccgcttgatcttgttaatgcgaagact
ttaacatcagttattaattcattctttggtaccaaccagctatctcagttcatggaccaa
accaacccattgtcagagatcactcacaagagaagattatctgcactagggcctggtggt
ttatcaagagaaagagcaggtttcgaggttcgtgacgttcaccatactcactatggaaga
atttgtccgattgaaactccggaaggaccgaacattggtttgatctcttctttgggaatc
tatgcgaaaattaacaacttaggtttcatcgaaactccatatagaaaagtagaaaacagt
aagattgatcttacttctgatcctatttatctgaatgcggaagacgaggaagataaagta
atcgctcaggctaacgtagaattgaacgataacggtgaattcgtaacagatagaattatt
gcaagactagatggtgactaccctgtagttgagccgcagcaggttgaccttattgacgtt
gcaccaaaccagatttctggtatttctgcttcattaattcctttcttggaacatgatgat
gcgaaccgtgcgttgatgggatctaacatgatgcgtcaggccgttcctctattgaagcca
caggctccaatcgttggtacaggtcttgagcagcaagttgcaagagattcaagaattttg
atcaatgctgaaggtacaggtactgtagaatatgtagatgcagataagatcactattaaa
tatgaaagaagcgatgacgaagatctagtatcattcgaatctgctactaaaacatataac
cttactaagtttagaaaaactaaccaaagtactaccattacactaagaccaaacgtaaga
gtaggtgaaacagtacaaaaaggacaagtactttgtgatggttatgctactgaaaatgga
gaattagctcttggtagaaacttagtggttgcgttcatgccttggaaaggatataacttt
gaggatgcgatcgtaatcaatgaaaaagttgttcgtgaagactggtttacttctatccac
gtagatgagtattctcttgaagttcgtgataccaaattaggtatggaagaattgacagca
gatattccaaacgtttctgaagaagctactaaagatcttgatgaaaacgggatgatcaga
attggtgctgaagtgaagcctggtgatattatgattggtaaaatcacacctaaaggtgaa
tctgacccaactcctgaagaaaaacttcttagagcaatctttggtgataaagctggtgat
gtaaaagatgcatcattaaaagctgactcttcattaagaggagttgtgatcaacaagaaa
ttgttctctagaaatattaaagataaaaagaagagaactgaagaaaaacttaaacttgaa
gaaattgaaaacacttacaaggctaagtttgatgagttgagaaatactttaattgaaaaa
ttaaatacacttgtaagtgggaaaacttctcaaggggttacaaacgaccttgatgaagaa
atcatcggtaaaggtgtgaaattcactcataaattattgacttcagttgaagattacgtt
aacgttagtggtgcagattggactgttgataatgataagaatgaattgatcaaacaattg
attcataattataaaatcaaattcaacgatatccaaggagttaaaaaccgtgagaaattt
gcaatttcaatcggagatgagcttccagcaggtatcatgaagttggctaaagtttatatc
gctaagaaacgtaaactaaatgtaggggataaaatggcaggacgtcacggtaacaaaggt
atcgtgtcaagaatcgttcgtgaagaagatatgccattcctagaagatggaacaccggta
gatatcgtattgaatccacttggggtaccttctcgtatgaacatcggacagatttatgaa
acagttcttggatgggctggtcagaaattaggaatgacgttcgctacaccaatcttcgat
ggagcaactcttgagcagattactgagtatactgaaaaagcaagtcttcctaagtttggt
aacactcacctttatgatggtggtaccggagaaagatttactcagcctgcaacagtaggg
gtaatctatatgttgaaattaggacacatggtagatgataagatgcacgcacgttctatc
ggtccttactcattgattactcagcagccgttaggaggtaaagctcagttcggaggtcag
agatttggagagatggaggtttgggctcttgaagcattcggagcatctaacatcttgaga
gagatcctgacagtgaagtctgatgacgtgattggtagagcaaaaacttacgaagctatt
gcaaaaggtgaatctatgcctgaaccaggtattccggaatcattcaatgtactacttcat
gagttacaaggtcttggattagacgtaagattggaggagtaa
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integrated database retrieval system
