Chryseobacterium piperi: CJF12_18805
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Entry
CJF12_18805 CDS
T05071
Symbol
rpoN
Name
(GenBank) RNA polymerase sigma-54 factor
KO
K03092
RNA polymerase sigma-54 factor
Organism
cpip
Chryseobacterium piperi
Pathway
cpip02020
Two-component system
cpip02040
Flagellar assembly
Brite
KEGG Orthology (KO) [BR:
cpip00001
]
09130 Environmental Information Processing
09132 Signal transduction
02020 Two-component system
CJF12_18805 (rpoN)
09140 Cellular Processes
09142 Cell motility
02040 Flagellar assembly
CJF12_18805 (rpoN)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
cpip03021
]
CJF12_18805 (rpoN)
Transcription machinery [BR:
cpip03021
]
Prokaryotic type
Bacterial type
RNA polymerase
Sigma factors
CJF12_18805 (rpoN)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Sigma54_CBD
Sigma54_DBD
Sigma54_AID
Med9
Motif
Other DBs
NCBI-ProteinID:
ASW76118
UniProt:
A0A086BK74
LinkDB
All DBs
Position
4261407..4262870
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AA seq
487 aa
AA seq
DB search
MLKQHLQLKLGQKLAPQQIQLMKLIQLHTLEFEEELERELEENPALEIAKEESKEDDYAA
LEDSYENEGTESIETDFDVNEYLYDDEPNYKTASSNYSADDEEFDNESLLTEGQSLYDYL
LEQIHLANINEEDVRIAEYIIGNLDTDGYLRREIKSIVDDLAFSQGIYTTKEKVEDILEN
YVQKLDPPGVGARGLQECLLLQIEKKVSSDKAVSLAANILRHQFDALTNKHYNKIIQKYD
IEEEDLKDALEEISKLSPKVGGNFDTQTITINQEIIPDFVIQVKDGQVVPMLNSKNAPTL
RVSEEYKDILTTYSHDKNSSEHKQAALFIKQKLDAAKWYIDAINQRQNTLLQTITAIVKF
QKEYFITGDEKSLKPMILKDVADITGFDISTISRVVKSKYADTPNGIVYLKDLFSDSLTN
DDGEEVSTKEIKTHLQEVISKENKRKPLTDDALVVILKEQGYNIARRTIAKYREQLNIPV
ARLRKEL
NT seq
1464 nt
NT seq
+upstream
nt +downstream
nt
atgcttaaacaacacttacaactcaaattaggacaaaagttggctccccagcagatccag
ttgatgaagcttattcagcttcatacattggaatttgaagaggaattggaaagagagtta
gaagaaaatcctgcattggaaattgccaaggaagaatctaaagaggatgattatgctgct
cttgaggattcttatgaaaatgaaggaacagaaagcattgaaactgattttgatgtgaat
gaatatctctacgatgatgagcctaactataaaacagcatccagtaattattctgcagat
gatgaagaatttgataatgaaagccttttaacagaaggccagtctttatatgactatttg
ctggagcagattcacctggcgaacattaatgaagaagatgtcagaattgctgaatacatt
atcggaaatttagatactgacggatatttgagaagagaaataaaatctattgttgatgat
ttggcgttttcgcaaggaatctatacaacaaaagagaaagtcgaagatatcttagagaac
tatgttcagaagcttgatccaccaggagtaggggcgagaggacttcaggaatgtctttta
ttgcagattgaaaagaaagtaagctctgataaagctgtttctttagctgctaatattctg
agacatcagttcgatgcattgacgaataagcattacaataagattattcagaagtatgat
attgaagaagaggatcttaaagatgctttagaagaaatttcgaaattatctccgaaagta
ggggggaactttgatactcagacgattactattaatcaggagattattccggattttgtc
attcaggtaaaagacggacaagtggttcctatgcttaatagtaaaaatgcacctacatta
agagtttctgaggaatataaagatattttaacgacgtactctcacgataaaaattcttct
gagcataagcaggctgctttattcatcaaacaaaaactggatgcagctaaatggtatatc
gatgctattaatcagcgccagaataccttattgcaaaccatcactgctattgttaagttc
cagaaagaatatttcatcacaggagatgaaaaatcattaaagccaatgattcttaaggat
gttgctgatattacaggatttgatatttcaaccatatcaagggtagtcaaaagtaaatat
gcggatactcctaatggaatcgtttatcttaaggacttgttttcggatagcttaacgaat
gatgatggtgaagaagtttctacaaaagaaatcaaaacgcatcttcaggaagtaatcagt
aaagaaaacaaaagaaaaccattgacagatgatgcgctggttgttattttgaaagaacaa
gggtataatattgcaagacgaacaattgcaaaatacagggaacagcttaatattcccgtg
gccagattaagaaaagaactataa
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