Corynebacterium pseudotuberculosis 3/99-5: Cp3995_0323
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Entry
Cp3995_0323 CDS
T01689
Symbol
rpoB
Name
(GenBank) DNA-directed RNA polymerase subunit beta
KO
K03043
DNA-directed RNA polymerase subunit beta [EC:
2.7.7.6
]
Organism
cpl
Corynebacterium pseudotuberculosis 3/99-5
Pathway
cpl03020
RNA polymerase
Brite
KEGG Orthology (KO) [BR:
cpl00001
]
09120 Genetic Information Processing
09121 Transcription
03020 RNA polymerase
Cp3995_0323 (rpoB)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
cpl03021
]
Cp3995_0323 (rpoB)
03400 DNA repair and recombination proteins [BR:
cpl03400
]
Cp3995_0323 (rpoB)
Enzymes [BR:
cpl01000
]
2. Transferases
2.7 Transferring phosphorus-containing groups
2.7.7 Nucleotidyltransferases
2.7.7.6 DNA-directed RNA polymerase
Cp3995_0323 (rpoB)
Transcription machinery [BR:
cpl03021
]
Prokaryotic type
Bacterial type
RNA polymerase
Core subunits
Cp3995_0323 (rpoB)
DNA repair and recombination proteins [BR:
cpl03400
]
Prokaryotic type
SSBR (single strand breaks repair)
NER (nucleotide excision repair)
TCR (transcription coupled repair) factors
DNA-directed RNA polymerase complex (RNAP)
Cp3995_0323 (rpoB)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RNA_pol_Rpb2_6
RNA_pol_Rpb2_7
RNA_pol_Rpb2_3
RNA_pol_Rpb2_2
RNA_pol_Rpb2_45
RNA_pol_Rpb2_1
Motif
Other DBs
NCBI-ProteinID:
AEX38795
LinkDB
All DBs
Position
339190..342726
Genome browser
AA seq
1178 aa
AA seq
DB search
MVVNIAGPPPREVLEGPILAVSRQTKSVADIPGAPERFSFAKITEPIEVPGLLDIQLDSF
AWLIGTPEWRARQQEELGESVRITSGLEEILEELSPIQDYSGNMSLSLSEPRFEDMKNTI
DECKDKDINYSAPLYVTAEFINNETQEIKSQTVFIGDFPMMTDKGTFIVNGTERVVVSQL
VRSPGVYFDQTIDKSTERPLHSVKVIPSRGAWLEFDVDKRDTVGVRIDRKRRQPVTVLLK
ALGWTTEQITERFGFSEIMMSTLESDGVANTDEALLEIYRKQRPGEQPTRDLAQSLLDNA
FFRAKRYDLAKVGRYKVNRKLGLGGDNEGLMTLTEQDIATTLEYLMRLHAGESTMVAPNG
DVIPVDTDDIDHFGNRRLRTVGELIQNQVRVGLSRMERVVRERMTTQDAESITPTSLINV
RPVSAAIREFFGTSQLSQFMDQNNSLSGLTHKRRLSALGPGGLSRERAGIEVRDVHASHY
GRMCPIETPEGPNIGLIGSLASYARVNSFGFIETPYRKVENGVLTDQIDYLTADEEDRFV
VGQAHVEVDAQGKITADSVTVRVKNGDIQVVAPESVDYLDVSPRQMVSVATAMIPFLEHD
DANRALMGANMQRQAVPLVRSEAPFVGTGMERRAAYDAGDLIINKKAGAVENVSADFITV
MADDGTRETYMLRKFERTNQGTCYNQIPLVNLGDRVEAGQVLADGPGTHNGEMSLGRNLL
VAFMPWEGHNYEDAIILNQRVVEEDILTSIHIEEHEIDARDTKLGAEEITREIPNVSEDV
LKDLDERGIVRIGADVRDGDILVGKVTPKGETELTPEERLLRAIFGEKAREVRDTSMKVP
HGETGKVIGVRRFSREDDDDLAPGVNEMIRVYVAQKRKIQDGDKLAGRHGNKGVVGKILP
QEDMPFMPDGTPVDIILNTHGVPRRMNIGQVLEVHLGWLAAAGWKIDPEDPANAELLKTL
PEDLYDVPAGSLTATPVFDGATNEEVAGLLANSRPNRDGDVMVDANGKAQLFDGRSGEPF
PYPVSVGYMYMLKLHHLVDEKIHARSTGPYSMITQQPLGGKAQFGGQRFGEMEVWAMQAY
GAAYTLQELLTIKSDDVVGRVKVYEAIVKGENIPDPGIPESFKVLLKELQSLCLNVEVLS
ADGTPMELSGSDDDEFDQAGASLGINLSRDERSDADIA
NT seq
3537 nt
NT seq
+upstream
nt +downstream
nt
atggtggtcaatattgcggggccaccgccgcgtgaggtgctggaaggacccatcttggca
gtctcccgccagaccaagtcagtggccgacatccccggggctcccgaacgtttttcgttc
gccaaaattacggaacctattgaggtcccgggacttcttgatattcagctagattccttc
gcatggctcattggtacgcccgagtggcgtgctcgtcagcaggaggagctaggtgaaagc
gtccgcataaccagcggactggaagaaatcttggaggagctatctccgattcaggattat
tccggaaacatgtcattgtctctctcggagccccgcttcgaggacatgaagaacactatc
gatgagtgtaaagacaaagacattaactattctgcgccgctttatgtgactgcagaattt
atcaataatgaaactcaggagatcaagtcccagactgtcttcatcggcgatttcccgatg
atgaccgacaagggaaccttcatcgttaacggcactgagcgtgtcgtggtctcccagctt
gttcgttcgcctggcgtttactttgaccagacgattgataagtccaccgagcgtccgctg
cactctgtgaaggtgatcccttctcgcggtgcgtggttggaatttgacgtggataagcgc
gacaccgttggtgtccgtattgaccgcaaacgtcgccagccggtgaccgttctgctcaag
gctcttggttggaccactgagcagatcacggagcgctttggtttctccgaaattatgatg
tccacgcttgagtcggacggtgtagctaacaccgatgaggctctgctggagatctaccgc
aaacagcgtccgggtgagcagccgactcgtgacctcgcgcagtcgctgctggataacgcc
ttcttccgcgcgaagcgttacgaccttgccaaggttggacgctacaaagtgaaccgcaaa
ctcggtctcggtggggacaacgagggtctgatgactctcactgagcaggacatcgcaacc
actctcgagtacctcatgcgtctccacgctggtgagagcactatggttgcacccaatggt
gatgttatccctgtggatacggatgacattgaccactttggtaaccgtcgtctccgtaca
gtcggagaactgattcagaaccaagtccgcgtgggcctgtcccgcatggagcgcgtggtt
cgtgagcgcatgactacccaggacgcagagtctattactcctacctccttgatcaacgtg
cgcccggtttctgctgccatccgcgagttctttggtacctcccagctctcgcagttcatg
gatcagaacaactccttgtctggcctcacacacaagcgccgtctctctgctctgggccca
ggcggcctgtcgcgtgagcgcgctggcattgaggttcgagacgttcacgcttctcactat
ggtcgtatgtgcccgattgagactcccgaaggtccgaacattggtttgatcggttccttg
gcttcctatgctcgggtaaactctttcggcttcatcgagaccccctaccgcaaggtggaa
aacggtgttctcaccgatcagatcgattacctcaccgcagatgaggaagatcgttttgtg
gttggtcaggctcacgtcgaggtagacgcacagggcaagatcaccgcagatagcgttact
gttcgtgtgaaaaatggtgacatccaggtcgtggcaccggaaagcgttgattacctagac
gtttccccacgccagatggtctctgtggctaccgccatgattccgttccttgagcacgac
gacgctaaccgtgccctcatgggcgcgaacatgcagcgtcaggctgtgccgctggttcgt
tcagaagccccgtttgtgggaaccggcatggagcgtcgtgctgcttatgacgccggcgac
ctcattatcaacaaaaaggctggcgctgtagagaacgtctccgctgatttcatcaccgtg
atggctgatgacggcacccgtgagacctacatgctgcgcaagtttgagcgcaccaaccag
ggcacctgctacaaccagatcccattggtgaacttgggcgaccgcgttgaggccggacag
gttctcgcagatggccccggtactcacaacggtgagatgtcgctcggccgcaaccttctt
gttgcgttcatgccatgggaaggccacaactacgaggacgctatcatcctcaaccagcgt
gttgtggaagaggacattcttacttcgatccacatcgaggaacacgagattgatgcccga
gacaccaaacttggtgcggaggagatcactcgtgagattcccaatgtgtccgaggatgtg
ctcaaggatctcgatgagcgcggcatcgttcgcatcggtgctgatgtccgcgacggcgat
atcttggtgggtaaggtcactcctaagggtgagaccgagctgacccctgaagagcgcctg
ctgcgtgcaatctttggtgagaaggcacgtgaggttcgcgatacctctatgaaggtgcct
cacggtgagaccggtaaggtcatcggcgttcgtcgtttctcccgtgaagacgatgatgat
ctcgcgcctggtgttaatgagatgattcgtgtctatgttgcccagaagcgcaagatccag
gacggcgataagcttgctggtcgccacggtaacaagggtgttgttggcaagatccttccg
caggaagacatgccattcatgcccgacggtaccccggttgacatcatcctgaacacgcac
ggtgtgcctcgtcgtatgaacatcggccaggtgctggaagtccaccttggttggttggct
gctgccggttggaagatcgaccccgaagaccccgctaacgccgagctgcttaagacgctt
cctgaggatctgtacgacgttcctgctggttcgcttaccgcaacaccagtgttcgacggt
gctaccaacgaggaagttgcaggcctcctagccaattctcgtccaaaccgcgacggcgat
gtcatggtggacgcaaacggcaaggcacagcttttcgacggtcgttccggcgagcctttc
ccatacccagtgtctgtcggctacatgtacatgctgaagctgcaccacttggttgatgag
aagatccacgcacgttctaccggcccttactccatgatcactcagcagccgttgggtggt
aaggctcagttcggtggacagcgcttcggcgaaatggaggtgtgggcaatgcaggcttat
ggcgctgcctacacgcttcaggagcttctgaccatcaagtctgatgacgtagtcggacgt
gtgaaggtctacgaggcaatcgttaagggcgagaacattccagatccgggtatccctgag
tccttcaaggtactcctcaaggagcttcaatcgctgtgcttgaacgtggaagttctttct
gcagacggcactccgatggagctgtccggttcggatgacgacgagttcgaccaggccggt
gcctcactgggcatcaacctgtctcgcgacgagcgttccgacgccgacatcgcctaa
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