Chiloscyllium plagiosum (whitespotted bambooshark): 122551645
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Entry
122551645 CDS
T08871
Symbol
scn1laa
Name
(RefSeq) sodium channel, voltage-gated, type I-like, alpha isoform X1
KO
K04834
voltage-gated sodium channel type II alpha
Organism
cpla
Chiloscyllium plagiosum (whitespotted bambooshark)
Brite
KEGG Orthology (KO) [BR:
cpla00001
]
09180 Brite Hierarchies
09183 Protein families: signaling and cellular processes
04040 Ion channels [BR:
cpla04040
]
122551645 (scn1laa)
Ion channels [BR:
cpla04040
]
Voltage-gated cation channels
Sodium channel, voltage-gated (Nav)
122551645 (scn1laa)
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Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Ion_trans
Na_trans_cytopl
Na_trans_assoc
IQ_SCN5A_C
PKD_channel
GPHH
IQ
ATP-synt_B
Lustrin_cystein
Motif
Other DBs
NCBI-GeneID:
122551645
NCBI-ProteinID:
XP_043549833
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Position
7:63626111..63823024
Genome browser
AA seq
2003 aa
AA seq
DB search
MAQPLLAPPGPDSLRLFTRESLANIERCIAEEKAKKPKDHHGDDDENGPKPNRDLEAGKT
LPYIYGDIPPGMVSEPMEDLDPFYSTQKTFIVLNKGKAIFRFSATPALYILSPFNPLRKL
AIKILVHSLFSMLIMCTIMTNCVFMTLYNPPDWTKNVEYTFTGIYTFESLIKILARGFCI
DNFTFLRDPWNWLDFSVILMAYVTEFVNLGNVSALRTFRVLRALKTISVIPGLKTIVGAL
IQSVKKLSDVMILTVFCLSVFALIGLQLFMGNLKHKCVRWPPPASYFIPINRSLSLNDTM
TNETEFIFNYEEYIEDDRNQYFLEDAKDALLCGNGSDAGQCPTGYLCLKAGRNPNYGYTS
FDTFSWAFLSLFRLMTQDFWENLYQLTLRAAGKTYMIFFVLVIFLGSFYLVNLILAVVAM
AYDEQNQATLEEAEQKEAEFQQMLEQLKRHQEEAQAAAAAAEAGDENGRIGLCEMSHSSS
DASKLSSKSAKERRNRRKKRRQTELDAEEKDKDERIHKSESEDNGRKGNGFRFSIDRNCL
SYEKKNSSPHQSLLSIRGSIFSPRRNSRSSIFSFKGRTKDVGSENDFADDEHSTFEDNES
RRGSLFIPRRQGERRSSNISQTSRSSRMLPVFPVNGKMHSTVDCNGVVSLAGGPSTPTSP
IGRLLPEVIIDKPATDDNGTNTETDLKKRRSGSHQFSMDFLEDPMQRQRALSVASILTNT
MEELEESRQKCPPCWYKFANTFLIWDCHPNWLKIKEIVHLIVMDPFVDLAITICIVLNTA
FMAMEHYPMTKRFEDVLTYGNLVFTGIFTGEMIFKIIALDPYYYFQEGWNIFDGIIVSLS
LMELGLANVEGLSVLRSFRLLRVFKLAKSWPTLNMLIKIIGNSVGALGNLTLVLAIIVFI
FAVVGMQLFGKNYKECVCKIDKDCILPRWHMSDFFHSFLIVFRVLCGEWIETMWDCMEVS
GQSLCLIVFMMVMVIGNLVVLNLFLALLLSSFSADNLAATDDDSEMNNLQIAVGRIQKGI
DYVKRNTRELIHRVFIRRKVTEDIKPLDDLHSKKDIYISDHAAVEITKDIDYHKDGNCTT
CGIGSSMGKYNTDENDYMSFIHNPSLTVTVPIAVGESDFENLNTEDFTSESDLEGSKEKL
AESSSSEGSTVDRTPPGEGEQPEEIPEESMEPEACFTEGCVQKFPFCYVNIQEGRGKSWW
NLRKTCYRIVEHNWFETFIIFMILLSSGALAFEDIYIEQKHNVKSMLEYADKIFTYIFIL
EMLLKWVAYGFVKYFTNAWCWLDFLIVDVSLVSLIANTLGYSELGAIKSLRTLRALRPLR
ALSRFEGMRVVVNALLGAIPSIMNVLLVCLIFWLIFSIMGVNLFAGRYYHCINITDGKRF
SIKIVDNESDCEQLNETARWKNVKINFDNVGAGYLALLQVATFKGWTDIMYAAVDLRGVK
QQPDYEHSLYMYFYFVIFIIFGSFFTLNLFIGVIIDNFNQQKKKFGGQDIFMTEEQKKYY
NAMKKLGSKKPQKPIPRPLNKIQGMVFDFVTQQAFDITIMILICLNMVTMMVETDNQSEK
MDNVLYWINMVFIVLFTSECVLKLIALRYYYFTIGWNTFDFVVVILSIVGMFLAEIIEKY
FVSPTLFRVIRLARIGRILRLIKGAKGIRTLLFALMMSLPALFNIGLLLFLVMFIYAIFG
MSNFAYVKKESGIDDMFNFETFGNSMICLFQITTSAGWDGLLAPILNSGPPDCDPTKDNP
GSPIKGDCGNPSVAILFFVSYIIISFLIVINMYIAIILENFSVATEESAEPLSEDDFEMF
YEVWEKFDSDATQFMEYSRLHDFADALEPPLRVAKPNRIQLIAMDLPMVSGDRIHCLDIL
FAFTKRVLGEGGEMDALRQQMEERFMASNPSKISYEPITTTLRRKQEHVSATIIQRAFRR
YLIRRTLKQASFMFKEKGKTSELLPGKEEMVIDKFNEISTTDKTDMTPSTTSPPSYDSVT
KPEKAREEKEKEDRGKDVRDYKK
NT seq
6012 nt
NT seq
+upstream
nt +downstream
nt
atggctcagccactgcttgcaccaccaggaccagacagcctccgcctttttacccgagaa
tctcttgcaaatattgagagatgcattgcagaggaaaaagccaagaaacccaaggaccat
catggggatgacgatgaaaatggcccaaaaccaaatcgtgatttggaagccggtaaaaca
ttaccatatatttatggtgacatacctccagggatggtgtctgagccaatggaagacctg
gacccattttacagcacacaaaaaacctttatagtattgaacaaagggaaggcaatcttc
cgatttagtgccacacctgccttgtacattttaagtcctttcaatccattaaggaaatta
gctattaagattttggtacattcattgttcagcatgcttatcatgtgcactattatgacc
aattgtgtgtttatgaccctgtataatcctccagactggacgaagaatgtagagtacacc
ttcactggtatttacacatttgaatcgcttataaaaattcttgcaaggggcttctgtata
gataatttcacttttctccgtgatccgtggaactggctggatttcagtgtcatccttatg
gcgtatgtaacagaatttgtaaacctaggcaatgtttcagctcttcgaactttcagagta
ttgagagctttgaaaactatttctgtaataccaggcctcaaaaccatcgtgggtgccctg
atccagtcagtgaagaagttgtctgatgtaatgattctgactgttttttgtttgagcgtg
tttgcactaatagggctgcaactattcatgggaaacctaaaacataaatgtgtgcgatgg
ccaccacctgccagctatttcattccaattaacagatctttaagcctgaatgatacgatg
acaaatgagacagaattcatattcaactatgaagaatacattgaagatgatcgaaatcaa
tattttctggaagatgccaaagatgcccttttatgtggtaatggctcagatgctggtcaa
tgccctacaggttatttatgtctgaaagctggaagaaaccctaattatggttatactagc
tttgatacatttagctgggcattcttgtcattgtttcgcctgatgacccaggacttctgg
gaaaacctttaccagttgaccctgcgagctgctggcaaaacatacatgatattctttgta
ctggttatattcctgggatctttctacttggttaacttgatcctggctgttgttgccatg
gcctatgatgagcaaaaccaggctactttagaggaagctgaacagaaagaggcagaattt
cagcagatgcttgaacaacttaaaagacatcaagaagaagcacaggctgcagccgctgca
gctgaggcaggagatgaaaatggaagaattggactctgtgaaatgtcccacagttcctca
gatgcgtcaaagcttagttcaaagagcgccaaggagagacgaaacagaaggaagaaacgg
agacaaaccgaactggatgctgaggaaaaggataaagatgaaaggattcacaagtcagaa
tcagaggacaatggaagaaagggaaatggtttccggttttctattgatcgcaattgtctt
tcttatgaaaagaaaaattcctccccacatcagtcactactaagtatccgtggatccatc
ttttctccaagacgcaacagcagaagcagcatcttcagttttaaaggacggactaaagat
gtagggtcagaaaatgattttgctgatgatgagcacagcacttttgaagacaatgaaagc
agaaggggctccctctttattccacggaggcagggtgagcgacgcagcagtaacattagt
cagaccagtaggtcatccaggatgctaccagtgtttccagtgaatgggaagatgcacagc
acagtggactgcaatggagtggtttcacttgccggtggtccttcaactccaacatcaccc
attggacgacttctgccagaggtgataatagataagccagctactgatgacaatggcact
aatacggaaacagatcttaagaagaggcgatcaggatctcatcaattttctatggatttt
ctggaagatcctatgcagagacagagagcattaagtgtggccagtattctcacgaatact
atggaagaacttgaagaatctcgacagaagtgtcctccatgctggtataaatttgcaaac
actttcttgatctgggattgccatccaaactggctaaaaataaaggaaattgttcattta
attgtaatggacccatttgtggatctcgctattactatctgcattgtgctgaacactgct
tttatggcaatggagcattatccaatgacaaagcgctttgaggatgtactcacatatggg
aatttggtatttactggtatttttactggtgaaatgattttcaaaatcatagcactggat
ccttattactacttccaagaagggtggaatatttttgatggcatcattgtgagtctcagt
ctaatggaacttggtctcgctaatgtggaaggactatctgtgctgcgatctttccgattg
ctcagagtttttaaattggcaaagtcatggccaaccctgaacatgctgattaaaattatt
ggcaactcagtaggtgctttgggcaacttgactttggtgttggccatcattgtcttcatc
tttgctgtggtgggcatgcaactcttcggtaaaaactacaaggaatgtgtgtgtaaaatt
gacaaggactgtatactgcctcgctggcacatgagcgacttctttcattcctttctaatt
gtgttccgtgtgttgtgtggagaatggattgagacaatgtgggactgcatggaagtttct
gggcaatctctgtgcctcattgtcttcatgatggtcatggtaattggtaatctggtggta
ttgaatttatttttggctttgctactgagctcattcagtgctgacaaccttgctgctaca
gatgacgacagtgaaatgaataacctacagattgctgtggggaggatacagaaaggcatt
gattatgttaaaagaaatacgcgagaattaattcatagagtttttatcaggaggaaagtc
acagaagacatcaaacctcttgatgatttgcatagcaagaaagacatttatatctcagat
catgcagctgttgaaatcactaaagacattgactatcataaggatggaaattgcaccacc
tgtggaattggcagtagtatggggaaatacaatactgacgaaaatgactatatgtccttt
attcacaatccaagcctcactgttactgttccaatagctgtgggggagtcagactttgaa
aacctaaacacagaagacttcactagtgaatcagacctagaaggtagcaaagagaaactg
gctgaaagcagttcatcagaagggagcacagttgacaggactccacctggagagggagag
caaccagaagaaataccagaagaatctatggaacctgaagcatgctttactgaaggatgt
gtacaaaaattcccattctgctatgtcaacatacaagaaggcagaggtaaatcatggtgg
aacctccggaagacttgctacagaatagtagaacacaattggtttgaaacattcattatt
ttcatgattcttctcagcagcggtgccctggcatttgaagatatttacattgaacaaaag
cacaacgtcaagtcaatgctggaatatgctgataaaatcttcacctacatctttattctg
gaaatgctgctgaagtgggtggcctatggttttgtgaagtatttcacaaatgcttggtgt
tggctggatttcctcattgttgatgtgtctttggtgagccttatagctaataccctgggc
tactcagaactaggtgctattaagtcccttaggacactgagagctttgagacctcttagg
gccttgtcacgttttgaaggcatgagggtggtcgtcaatgcacttcttggagcaattcca
tccattatgaatgtgctacttgtctgcctgatattctggctcattttcagtataatgggt
gtaaatctttttgctggaagatactaccactgtatcaatataactgacggaaaacggttc
tccatcaagattgttgacaatgaaagtgattgtgagcagcttaatgaaaccgcacgatgg
aaaaatgtaaaaatcaactttgataatgttggggctggctaccttgctttactacaagtg
gcaacatttaaaggatggacggacatcatgtatgcagctgttgatttaagaggtgtgaag
cagcagcctgactatgaacacagtctgtacatgtacttttattttgtcatcttcatcatc
tttggatctttcttcactctaaatctgtttattggtgttatcattgacaacttcaatcaa
cagaagaaaaagtttggaggtcaagatattttcatgactgaagaacagaagaaatattac
aatgctatgaaaaaacttggttccaagaaaccacagaaaccaataccaaggcccttgaac
aagattcaaggaatggtgtttgattttgtaacccagcaagcctttgatatcactatcatg
attctcatctgccttaacatggttaccatgatggtggagacagataatcaaagtgaaaag
atggataatgtcttatattggatcaacatggttttcattgtccttttcacaagcgagtgt
gtgctgaaactgattgcactccgctattattactttacaattggctggaatacttttgac
tttgtggtggtcattctttctattgtaggcatgttcttagctgaaattattgaaaaatac
tttgtgtcaccaacgttatttagagttatccgacttgccagaattggtcgcatcctccgt
ttaatcaagggtgctaaggggatccgtacactgctgtttgcattgatgatgtctcttcct
gctttgttcaacattggtctgttgttattcttagtcatgttcatttatgccatttttggg
atgtctaattttgcttatgtgaagaaggagtctggcattgatgacatgttcaactttgaa
acttttgggaacagcatgatctgcctgtttcagatcaccacatctgctggctgggatggg
ttactggctccgattttaaatagtgggccaccagactgtgacccaacaaaggataatcca
ggcagccccataaagggagattgtggtaatccatcagtagcaattttattctttgtaagt
tacatcataatatctttcttgattgtcataaatatgtatattgctattattctggagaat
ttcagtgttgctacagaggaaagtgctgaaccactgagtgaggatgactttgaaatgttt
tatgaagtatgggaaaaatttgattcagatgcaactcaatttatggagtatagtagattg
catgattttgcagatgccttggaaccacctcttcgtgttgcaaaacccaacagaatacaa
cttatagctatggacttgcccatggttagtggagatagaattcactgtcttgatattttg
tttgcatttacaaagcgtgtgcttggtgagggtggagaaatggatgctcttcgacaacag
atggaagaacgctttatggcatccaatccctccaagatatcctatgagccaattacaacc
actttgcgacgtaaacaggaacatgtttctgcaactataattcagagagctttcagacga
tatctgattaggcgaacattgaaacaagcctctttcatgttcaaagaaaaaggtaaaaca
agtgagctactacctggcaaagaagaaatggtaatagataagtttaatgaaatttccact
acagacaaaactgatatgactccttctaccacatctccaccatcctatgacagtgtaaca
aaaccagagaaagcaagagaggagaaagagaaagaagatagaggcaaagatgtaagggac
tataaaaagtaa
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