Chiloscyllium plagiosum (whitespotted bambooshark): 122558642
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Entry
122558642 CDS
T08871
Symbol
cnot1
Name
(RefSeq) CCR4-NOT transcription complex subunit 1
KO
K12604
CCR4-NOT transcription complex subunit 1
Organism
cpla
Chiloscyllium plagiosum (whitespotted bambooshark)
Pathway
cpla03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
cpla00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
122558642 (cnot1)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
cpla03019
]
122558642 (cnot1)
Messenger RNA biogenesis [BR:
cpla03019
]
Eukaryotic type
mRNA surveillance and transport factors
mRNA cycle factors
P-body specific factors
122558642 (cnot1)
mRNA degradation factors
3'-5' decay
Ccr4-NOT complex
122558642 (cnot1)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Not1
CNOT1_CAF1_bind
NOT1_connector
ARM_Cnot1
CNOT1_TTP_bind
DUF3819
CNOT1_HEAT
CNOT1_1st
SCRE
Motif
Other DBs
NCBI-GeneID:
122558642
NCBI-ProteinID:
XP_043563375
LinkDB
All DBs
Position
17:complement(66763157..66907434)
Genome browser
AA seq
2404 aa
AA seq
DB search
MTHKIDDIVDTEEGYLKLQQDIDQLDKSAEKWQMEFNIVKCELLHFQKSNQDRSFMVNDR
ALIVNRHGPEADRHLLRCLFSHVDFSGDGKSSGKDFHQTQFLIQECASLITKPNFISTLC
YAIDNPLHYQKSLKPSPHLFTQLSKVLKLSKVQEVIFGLALLNSSSSDLRGFALQFVKQK
LPDLLRSYIDADVSGNQEGGFQDIAIEVLHLLLSHLLFGQKGAFGVGQEQIDAFLKTLRR
DFPQERCPVVLAPLLYPEKRDILMDRILTDSGGIAKTMDSSLADFMQEVGYGFCTSVEEC
RQIILQFGVRDVTASQVARVLGMMARTHSGLTDGISLQSISAPSSGIWSDGKDKSDSAQA
HTWNVEIFIDVVKEVNPNLNFKEVTYELDHPGFILRDSKGLQIAVYGIQKGMGIEVFPVD
LIYRPWKHAEGQLSFIQHSLMNPDIFCFADYPCHTVVTDILKAPPEDDNREIATWKSLDL
IETLLRLSELGQYEQVKQLFNFPIKHCPDMLVLALLQINPTWHTLRHELISTLMPIFLGN
HPNSAIILHYAWHGQGQSPSIRQLIMHAMAEWYMRGEQYDQAKLSRILDVAQDLKALSML
LNGTPFAFVIDLAALASRREYLKLDKWLTDKIREHGEPFIQACVTFLKRRCPSIMGGLAP
EKEQPKSAQLPPETLATMLACLQACAGSVSQELSETILTMVANCGNVMNKARQPPPGVMP
KVRAPSTSSIETMSPVQVQIIDPLSGMASLTIGGSAASLTPSMQGFTTNLSSAFNTPQSP
AKAFPPLSTPNQTTPFSGIGSLPSQLPGSLGTGSLSGMGTGGLALPTVNTDPFGQRKMST
SGLNPQTFQQSKMKPSDLSQVWPEANQHFSKEIDDEANSYFQRIYNHPPHPTMSVDEVLE
MLQRFKDSNIKREREVFNCMLRNLFEEYRFFPQYPDKELHITACLFGGIIEKGLVTYMAL
GLALRYVLEALRKPFDSKMYYFGIAALDRFKNRLKDYPQYCQHLASIGHFLQFPHHLQEY
IEYGQQSRDPPVKMQGSITTPGSIALAQAQAQAQAQNKTPLTRQVSAIVTTSTTTTVTKA
TTVTRPSGVSFKKDVPPSINTTNIETLLVATDQAERIVEPPENIQEKVAFIFNNLSQSNM
TQKVEELKETVKDEFMPWVSQYLVMKRVSIEPNFHSLYSNFMDTLKNSDFNKMVLTETYR
NIKVLLTSDKAAANFSDRSLLKNLGHWLGMITLAKNKPILHIDLDVKSLLLEAYVKGQQE
MLYVVPFVAKVLESSVRSMVFRPPNPWTMAIMNVLAELHQEHDLKLNLKFEIEVLCKNLA
LDINDLKPGTLLKDKEKLTNLEEQLSAPKRESKIPEELPVVVTTAAPVTPATTTTCTSTV
PPQPQFSYHDINVYSLAALAPHITVNPNIPLFQAHPQLKSYVRQAIERAVQELVHPVVDR
SIKIAMTTCEQIVRKDFALDSEESRMRVAAHHMMRNLTAGMAMITCREPLLMSIATNLKN
NFATALRTASPQQREMMEQAAAQIAQDNCELACCFIQKTAVEKAGPEMDKRLATEFELRK
HARQEGRRYCDPVVLTYQAERMPEQIRLKVGGVDPKQLAVYEEFARNIPGFLPSNDISQP
TGFLAKPMQQAWATDDIAQIYDKCITELEQHLHAIPPTLAMNPQTQALRNLLEAVVMARN
SRDAIAALGLLQKAVEGLLDATSGADPDLLLRYRECHLLVLKALQDGRAYGSQWCNNKIT
RCLIECRDEYKYNVDAVELLIRHHLVNMQQYDIHLAQSMENGLNYMAVAFAMQLVKFLLV
DERSISHVTEADLFNTIETLMRISAHSRGNAPEGLPQLMDLLRANYEAMMDRAHGGPNFM
MHSGISQASEYDDPPGLREKAEYLLREWVNLYHSAAAGRDSTKAFSAFVGQMHQQGILKT
DDLITRFFRLCTEMCVEISYRAQQEQQHNPTANPTMIRAKCYHNLDAFVRLIALLVKHSG
EATNTVTKINLLNKVLGIVVGVLLQDHEVRQSEFQQLPYHRIFIMLLLELNAPEHVLETI
NFQTLTAFCNTFHILRPTKAPGFVYAWLELISHRIFIARMLAHTPQQKGWPMYAQLLIDL
FKFLAPYLRNVELTKPMQILYKGTLRVLLVLLHDFPEFLCDYHYGFCDVIPPNCIQLRNL
ILSAFPRNMRLPDPFTPNLKVDMLSEINIAPRILTNFTGVMPPQFKKDLDSYLKTRSPVT
FLSELRSNLQVSRTRVSNEPGNRYNIQLINALVLYVGTQAIAHIHNKGSTPSMSTITHSA
HMDIFQNLAVDLDTEGRYLFLNAIANQLRYPNSHTHYFSCTMLYLFAEANTEAIQEQITR
VLLERLIVNRPHPWGLLITFIELIKNPAFKFWNHEFVHCAPEIEKLQLIPLSKYLTRAPG
CSSL
NT seq
7215 nt
NT seq
+upstream
nt +downstream
nt
atgactcataaaatagatgatatcgtggacactgaggaaggttatctgaaattgcagcag
gacattgatcagttggataaatctgctgagaaatggcaaatggagtttaatatagttaag
tgtgagctcttgcattttcaaaagtcaaatcaagacaggagtttcatggtgaatgatagg
gccttgattgtgaaccgacacgggcccgaggcagacagacacttattacgctgtctattc
tcgcacgtggatttcagtggcgatggtaaaagtagcggcaaagatttccatcagactcag
tttctgattcaagagtgtgcgtccctgattactaagccaaactttatctcgacgctgtgc
tacgccattgacaatccgttgcactatcagaagagcctgaagccttcaccccatctgttt
actcagctcagtaaagtgctcaagttaagcaaggtccaagaggtcatctttggccttgca
ttgctgaattcttctagctcagatctgcgggggtttgctctccagttcgtgaaacagaaa
cttcccgatcttctgcgatcttacatcgacgcagacgtaagcgggaaccaagaaggtggc
tttcaggatattgcaatagaagtcctacacctgctcctctcccatttgctgtttgggcaa
aagggagcttttggtgttggacaggaacaaattgacgcttttcttaagaccttgcgcaga
gattttccgcaagagcgttgtcctgtggtgcttgcaccactgctatatcctgaaaaacgg
gacattctgatggatagaatcctgacagattcgggagggatagcgaaaacgatggacagc
tcactggcagactttatgcaagaagtaggctacggcttttgtacaagtgttgaagaatgc
cgccaaataattttgcagtttggggttcgggatgtgactgcatctcaggttgccagggtg
ctgggaatgatggctcggacgcattcaggcctgaccgatggcatttctttacaatctata
tcagcccctagtagtggaatctggagtgatgggaaggataaaagtgactcagcacaagct
catacctggaatgtagaaatatttattgatgttgtgaaagaagtgaatccaaacctaaat
tttaaagaagtgacttatgaactggatcacccaggattcatccttcgcgacagcaaaggt
ctacagatagctgtgtatggcatccagaaggggatggggattgaagtctttcctgttgat
ctcatctataggccttggaagcatgcagaaggacagctatcgtttattcagcattcatta
atgaacccagatatcttctgttttgctgactacccatgtcatactgtggtgacagacatc
ttgaaagctcctccagaggatgataaccgagaaattgctacatggaaaagcctggacctt
attgagaccctactacgtctttcagagctgggacagtatgagcaggtcaaacaactcttt
aacttcccaatcaagcactgcccggacatgctggtactggccttactgcagattaaccca
acctggcacacactgcgccatgagctcatttccacactgatgccaattttcctgggcaat
catccaaattctgccattatcttgcactatgcatggcacggacagggtcaatccccatcg
atccgacagctgatcatgcatgcaatggcagagtggtacatgcgtggtgagcagtatgac
caggccaagctctcacgcattcttgatgtagctcaagacttgaaggccttgtctatgctg
ctaaatggtactccgtttgcctttgttattgatcttgctgcacttgcatctcgccgagaa
tacctcaaacttgataaatggttaactgataaaattcgcgagcatggggaaccatttatc
caggcatgtgtgacgttcctaaagaggcgttgtccttccattatgggtggactggcccca
gaaaaggaacagcccaagagtgctcaactccctccagaaacactggccaccatgttggct
tgcttacaagcctgtgcagggagtgtttcacaggagctgtcagagaccattctcacaatg
gtggccaactgtggcaatgtcatgaacaaggcccgtcagccgccacctggagtaatgccc
aaggtccgcgcacctagtaccagcagtatagaaaccatgtcacctgtacaggtacaaata
attgacccattgtctggcatggcttcgttgactattggtggatcagcagcatcgctcact
ccaagtatgcagggttttactactaatctgagttctgcattcaacacccctcaatcacca
gcaaaagcctttccaccactctctacaccaaatcagacaactcctttcagtggaattggc
agtcttccttctcagctcccaggtagtttgggtacagggagtttgagtggtatgggaact
ggtggacttgcactaccaactgtgaacactgacccctttggacagagaaagatgagcaca
tctggactgaacccacagacattccagcagagtaagatgaaaccttctgacctctctcag
gtttggccagaggcaaatcagcactttagcaaggagattgatgatgaagcaaatagctac
ttccagcgtatctacaaccatccaccccaccctaccatgtctgttgatgaggttttggaa
atgctgcagaggtttaaggattccaacattaaacgtgaaagagaagtgtttaactgtatg
ctacgcaacctctttgaggagtatcgcttcttcccccagtacccagataaagagctgcac
atcaccgcctgcctgtttggtggaattatcgaaaaggggctggtcacctatatggcattg
ggacttgcactgcgctatgttcttgaagctttgcgcaaaccttttgactccaagatgtac
tactttggtattgctgcactagacagatttaaaaatagattgaaggattatccgcagtat
tgtcagcacttggcttctattggccacttcttacagtttcctcatcatttacaggagtac
attgagtatggccagcaatccagagaccctcctgtgaaaatgcaaggtagcatcacaact
cctggcagtattgcattggctcaggcacaggctcaagcacaggctcagaacaagacccct
ctcaccagacaagtcagcgccatagtaaccacgtccacaaccactaccgttaccaaagcc
actacagttaccaggccgagtggagtgagctttaagaaagatgtcccaccctccatcaat
acaactaacatcgaaacattgttggtggccacagaccaggcagagagaatagtagagcca
ccagagaatattcaagaaaaagtggcttttatcttcaacaacctgtcgcaatccaacatg
acacaaaaggtggaagagttaaaagagacagtgaaagatgagtttatgccctgggtatcc
cagtatttggtcatgaagagagttagcattgaacctaattttcacagtctgtactccaac
tttatggacacattgaagaattcagattttaacaaaatggtactcactgagacttacagg
aacattaaggtattgttgacctctgacaaggctgcggcaaacttttcagatcggtcattg
ctgaagaatcttggccattggctaggcatgatcaccttagccaaaaataagcccatcttg
cacattgatctggatgtgaagtcgttgctgctggaggcttatgtgaaaggtcagcaggag
atgctctatgttgtcccctttgttgccaaagttttagagtccagcgttaggagtatggtt
tttcggcccccaaatccttggacaatggccatcatgaatgtactagcagagttgcatcaa
gagcatgatttgaagttaaacctgaagtttgaaattgaggtgctgtgtaaaaatctcgct
ttggacatcaacgacttgaagccaggaactttactaaaggacaaagaaaaattgacaaac
ctagaggaacagctttctgctccaaaaagagaatccaaaataccagaggagttgcctgta
gttgtcaccactgctgcaccagtgactccagccacaaccaccacgtgtacatccacagtc
cctccacaaccacagttcagctaccacgacatcaatgtgtattcattggctgctttggct
cctcatattacagtcaacccaaatattccattattccaagcccaccctcagctgaagtcg
tacgtccggcaggcaatagagcgtgctgtgcaggagcttgttcatcctgttgttgaccgt
tccatcaagattgccatgaccacatgtgaacagatagtcaggaaagattttgctctggat
tctgaggagtcacggatgcgagttgcagcccatcacatgatgcgtaacctcaccgcagga
atggctatgattacatgcagggagccattattaatgagcatagctacaaacctaaagaat
aattttgccactgcattacggactgcttctccacaacaaagggaaatgatggagcaagca
gcagcacagatagcacaagacaactgcgagctggcctgttgctttattcagaaaacagct
gttgaaaaagcgggtcctgaaatggacaaacgccttgccacagaatttgaacttcggaag
catgctaggcaggagggtcgtcgttactgtgatcctgtggtgctcacttaccaggctgag
cgcatgcctgaacaaatcagattgaaggtgggaggtgtagatcccaagcaactagctgtg
tatgaagaatttgcacgcaatatcccaggctttcttcccagtaatgacatttcacagcca
actggtttcttggccaagcccatgcagcaagcttgggcaactgacgatatcgcacagatt
tatgacaagtgcatcactgaactggagcagcacctacatgcaattccaccaactctggcc
atgaaccctcagactcaggcacttcgtaacttactggaggctgtggtaatggccaggaac
tcccgtgacgctattgctgctctaggcctcttgcagaaggctgtagagggactgctagat
gccacaagtggtgcagacccagacctcctgcttcgttatcgtgaatgccatttgttggtt
ttgaaagccctgcaggacggtcgtgcttatggatcacagtggtgtaataataaaatcacc
aggtgcctgattgagtgtcgtgacgaatacaaatacaatgtggatgctgtggaattgctc
attcggcaccatctggtcaacatgcagcagtatgacatccatttagcccagtcaatggaa
aatggcttgaactatatggccgtagccttcgccatgcagttggttaagtttctgttggtc
gatgagaggagcattagtcacgtaactgaagccgacctgttcaataccattgaaacactt
atgaggatcagtgctcattccagagggaatgcacctgaaggattgccacagcttatggat
ttgcttcgagctaactacgaagctatgatggatcgcgcacacggtggccccaactttatg
atgcactctgggatatcccaggcctctgaatacgatgacccaccaggtcttcgagaaaaa
gctgagtatctgctgagagagtgggtaaacctctatcactctgcagcagctggacgggac
agcaccaaagcgttctctgcctttgttgggcagatgcaccagcagggaatcctcaagacc
gatgacctgattactcgctttttccgactatgtactgaaatgtgtgttgaaatcagttac
cgtgcacaacaggagcagcagcacaatcctacagccaatcccacgatgatcagggccaag
tgctatcacaacctggatgcatttgtcaggctaatagccctgctggtcaagcattctgga
gaggccaccaacacagtcacaaaaattaaccttctcaacaaggtactggggattgttgtt
ggagtactactacaagatcacgaagtacgtcagagtgaatttcagcagctgccatatcat
cgaatcttcatcatgttgttgctagagctaaatgcccctgagcatgtgctggaaacgatc
aacttccagacactgactgctttctgcaacacatttcacatcttgcggcctactaaagct
cctggctttgtctatgcttggctggaactaatttcccaccggatcttcattgcgagaatg
ctggcgcatacaccccaacagaagggctggcccatgtatgcccagctgttgatcgatctg
tttaagttcctggctccttacttgaggaatgtggagttgacaaaacctatgcaaattctt
tacaagggtacactgcgtgtcttgcttgtccttttgcatgactttccagagttcctttgt
gactaccattatggcttctgcgatgtgatcccgccaaactgtattcagctgcgaaacctg
atcctgagtgccttcccacggaacatgcgactgccagacccattcacaccgaatctaaag
gtggatatgctgagtgaaatcaacattgctcctcggatattgaccaacttcacaggagtg
atgccacctcagtttaagaaggacttggattcctatttgaagacgcggtcaccggtcacc
tttctctcagagttgcgcagtaacctgcaggtgagcaggacaagggtatcaaacgaacct
ggtaatcggtataacatccagctaataaatgccctggtgttgtatgtggggacgcaggcg
attgctcacatccataacaagggcagcacaccatccatgagcacgatcacacactctgcc
cacatggacatcttccagaacctggctgtcgaccttgacacagaaggtcggtacttgttc
ctgaatgcgattgccaatcagttgcgttacccaaacagccacactcactatttcagctgc
actatgctgtatctgtttgctgaagccaacacagaagctatccaggagcagatcaccagg
gtgctgttggagaggctgattgtaaacaggcctcacccatgggggctcctcatcaccttc
attgagctgattaaaaaccccgccttcaaattctggaaccacgagtttgtccactgtgct
cctgagattgaaaagttgcagcttatacctctctccaaatatctgacccgagccccaggt
tgttccagtctgtag
DBGET
integrated database retrieval system
