Cavia porcellus (domestic guinea pig): 100712839
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Entry
100712839 CDS
T07777
Symbol
Cnot1
Name
(RefSeq) LOW QUALITY PROTEIN: CCR4-NOT transcription complex subunit 1
KO
K12604
CCR4-NOT transcription complex subunit 1
Organism
cpoc
Cavia porcellus (domestic guinea pig)
Pathway
cpoc03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
cpoc00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
100712839 (Cnot1)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
cpoc03019
]
100712839 (Cnot1)
Messenger RNA biogenesis [BR:
cpoc03019
]
Eukaryotic type
mRNA surveillance and transport factors
mRNA cycle factors
P-body specific factors
100712839 (Cnot1)
mRNA degradation factors
3'-5' decay
Ccr4-NOT complex
100712839 (Cnot1)
BRITE hierarchy
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
Not1
CNOT1_CAF1_bind
NOT1_connector
ARM_Cnot1
CNOT1_TTP_bind
DUF3819
CNOT1_HEAT
CNOT1_1st
Motif
Other DBs
NCBI-GeneID:
100712839
NCBI-ProteinID:
XP_005004757
Ensembl:
ENSCPOG00000013026
LinkDB
All DBs
Position
Unknown
AA seq
2279 aa
AA seq
DB search
MNLDSLSLALSQISYLVDNLTKKNYRASQQEIQHIVNRHGPEADRHLLRCLFSHVDFSGD
GKSSGKDFHQTQFLIQECASLITKPNFISTLSYAIDNPLHYQKSLKPAPHLFAQLSKVLK
LSKVQEVIFGLALLNSSSSDLRGFAAQFIKQKLPDLLRSYIDADVSGNQEGGFQDIAIEV
LHLLLSHLLFGQKGAFGVGQEQIDAFLKTLRRDFPQERCPVVLAPLLYPEKRDILMDRIL
PDSGGVAKTMMESSLADFMQEVGYGFCASIEECRNIIMQFGVREVTAAQVARVLGMMART
HSGLTDGIPLQSISAPGSGIWSDGKDKSDGAQAHTWNVEVLIDVLKELLHSIMTQWKSLD
LIESLLRLAEVGQYEQVKQLFSFPIKHCPDMLVLALLQINTSWHTLRHELISTLMPIFLG
NHPNSAIILHYAWHGQGQSPSIRQLIMHAMAEWYMRGEQYDQAKLSRILDVAQDLKALSM
LLNGTPFAFVIDLAALASRREYLKLDKWLTDKIREHGEPFIQACMTFLKRRCPSILGGLA
PEKDQPKSAQLPPETLATMLACLQACAGSVSQELSETILTMVANCSNVMNKARQPPPGVM
PKGRPPSASSLDAISPVQIDPLAGMASLSIGGSAAPHTQSMQGFPPNLGSAFSTPQSPAK
AFPPLSTPNQTTAFSGIGGLSSQLPVGGLGTGSLTGIGTGALGLPAVNSDPFVQRKLGTS
GLNQPTFQQTDLSQVWPEANQHFSKEIDDEANSYFQRIYNHPPHPTMSVDEVLEMLQRFK
DSTIKREREVFNCMLRNLFEEYRFFPQYPDKELHITACLFGGIIEKGLVTYMALGLALRY
VLEALRKPFGSKMYYFGIAALDRFKNRLKDYPQYCQHLASISHFMQFPHHLQEYIEYGQQ
SRDPPVKMQGSITTPGSIALAQAQAQAQVPAKAPLAGQVNTMVTTSTTTTVAKTVTVTRP
TGVSFKKDVPPSINTTNIDTLLVATDQTERIVEPPENIQEKIAFIFNNLSQSNMTQKVEE
LKETVKEEFMPWVSQYLVMKRVSIEPNFHSLYSNFLDTLKNPEFNKMVLNETYRNIKVLL
TSDKAAANFSDRSLLKNLGHWLGMITLAKNKPILHTDLDVKSLLLEAYVKGQQELLYVVP
FVAKVLESSIRSVVFRPPNPWTMAIMNVLAELHQEHDLKLNLKFEIEVLCKNLALDINEL
KPGNLLKDKDRLKNLDEQLSAPKKDVKQPEELPPITTTTTSTTPATSTTCTATVPPQPQY
SYHDIXVYSLAGLAPHIPFPSQIPLFQAHPQLKQCVRQAIERAVQELVHPVVDRSIKIAM
TTCEQIVRKDFALDSEESRMRIAAHHMMRNLTAGMAMITCREPLLMSISTNLKNSFASAL
RTASQQQREMMDQAAAQLAQDNCELACCFIQKTAVEKAGPEMDKRLATEFELRKHARQEG
RRYCDPVVLTYQAERMPEQIRLKVGGVDPKQLAVYEEFARNVPGFLPTNDLSQPTGFLAQ
PMKQAWATDDVAQIYDKCITELEQHLHAIPPTLAMNPQAQALRSLLEVVVLSRNSRDAIA
ALGLLQKAVEGLLDATSGADADLLLRYRECHLLVLKALQDGRAYGSPWCNKQITRCLIEC
RDEYKYNVEAVELLIRNHLVNMQQYDLHLAQSMENGLNYMAVAFAMQLVKILLVDERSVS
HVTEADLFHTIETLMRINAHSRGNAPEGLPQLMEVVRSNYEAMIDRAHGGPNFMMHSGIS
QASEYDDPPGLREKAEYLLREWVNLYHSAAAGRDSTKAFSAFVGQMHQQGILKTDDLITR
FFRLCTEMCVEISYRAQAEQQHNPAANPTMIRAKCYHNLDAFVRLIALLVKHSGEATNTV
TKINLLNKVLGIVVGVLLQDHDVRQSEFQQLPYHRIFIMLLLELNAPEHVLETINFQTLT
AFCNTFHILRPTKAPGFVYAWLELISHRIFIARMLAHTPQQKGWPMYAQLLIDLFKYLAP
FLRNVELTKPMQILYKGTLRVLLVLLHDFPEFLCDYHYGFCDVIPPNCIQLRNLILSAFP
RNMRLPDPFTPNLKVDMLSEINIAPRILTNFTGVMPPQFKKDLDSYLKTRSPVTFLSDLR
SNLQVSNEPGNRYNLQLINALVLYVGTQAIAHIHNKGSTPSMSTITHSAHMDIFQNLAVD
LDTEGRYLFLNAIANQLRYPNSHTHYFSCTMLYLFAEANTEAIQEQITRVLLERLIVNRP
HPWGLLITFIELIKNPAFKFWNHEFVHCAPEIEKLFQSVAQCCMGQKQAQQVMEGTGAS
NT seq
6840 nt
NT seq
+upstream
nt +downstream
nt
atgaatcttgactcgctctcgctggccttgtctcaaatcagctacctggtggacaattta
accaagaaaaactaccgagccagccagcaggaaatacagcatattgtgaatcggcacggt
cctgaggcagacaggcatttactacgctgcctattctcacatgtggatttcagtggcgat
ggtaaaagcagtggcaaagattttcatcagactcagtttctgattcaggagtgtgcgtcg
ctgattacaaaaccaaattttatttcaacattgtcatatgccattgataatccattgcac
tatcagaagagtttaaagcctgcaccccacttatttgcccagctgagtaaggttcttaag
ttaagcaaagtacaagaggtaatttttggtcttgccctcttgaattcttcgagttcagat
ctccgaggttttgctgctcagtttattaaacagaagcttccggatcttctgcgttcttac
attgacgcagacgttagtggaaatcaagaaggtggcttccaagatatagcaatagaggtc
ctacatctcctcctctcccatctcctatttgggcagaagggagcctttggagttggacag
gaacagatagacgcttttcttaagacactgcgcagagattttccccaagaacgctgtcct
gtggtgcttgcaccacttttatatcctgaaaaacgggacattctaatggacaggatcctg
cctgattctggaggggtagctaagaccatgatggagagctctttagctgatttcatgcaa
gaagtgggctatggcttttgtgcaagtattgaagaatgtcgcaatataatcatgcagttt
ggcgttcgagaagttacagctgcccaggttgcaagggttttgggaatgatggctcgaact
cattcagggttaacagatggcattccactacagagtatctctgcccctggcagtgggatc
tggagtgatggaaaagataaaagtgatggcgcacaggcacacacatggaatgtggaagtc
ttgattgatgttctcaaagaactgcttcattccatcatgacccaatggaagagcttggat
ttgattgaatctctgctgaggcttgcagaggttgggcagtatgagcaagtcaaacaactc
ttcagtttccctatcaaacactgtccagacatgttggtattggccttactacagatcaac
acctcctggcataccttgcgccatgaactcatttccactctgatgccaatcttccttgga
aatcatcctaactctgctattattttgcactatgcatggcatggacagggacagtctccc
tcaattcgccagcttatcatgcatgcaatggctgaatggtacatgagaggggagcagtat
gaccaggccaaattgtctcgaatacttgatgtggcccaggacttgaaggctttatcaatg
ctgctaaatggtactccgtttgcctttgttattgatcttgctgcacttgcctctcgtcgt
gaatacctcaaacttgacaagtggctcacagataaaattcgagaacatggggagcctttt
atacaagcgtgcatgacttttttaaagagacgttgcccttcaattttgggtggacttgcc
ccagagaaagaccaacccaaaagtgctcagctgcctcctgaaactctggcaacaatgttg
gcctgtctacaggcttgtgcagggagtgtttctcaggagttatcagagactatcctcacc
atggtagccaactgcagtaatgttatgaataaagccagacagccgccacctggggttatg
ccaaaaggacgccctcctagtgctagcagcttagatgccatttctcctgttcagattgac
cctcttgctggaatggcatctcttagtataggtggctcagctgcccctcacacacagagt
atgcaaggtttccctccaaatttgggttctgcattcagtacccctcagtcaccagcaaaa
gcatttccacctctgtcaaccccaaatcaaactactgcattcagtggtattggaggactt
tcatcacaacttccagtaggtggtcttggcacaggcagcctgactggtataggaactggg
gctcttggactccctgcagtgaatagcgacccttttgtacagaggaaactgggcacctct
ggactgaaccagcctacattccagcagacggacttgtctcaggtgtggccagaggcaaac
cagcactttagtaaagagatagatgatgaagcaaatagctatttccagcgaatatataat
cacccaccacatcctaccatgtctgttgatgaggtattagaaatgctacagagatttaaa
gactctactataaaaagggaacgagaagtatttaactgtatgctaaggaacttgtttgaa
gaatatcgttttttcccccagtaccctgataaagagttacatataacagcttgccttttt
ggtggcataattgagaaaggactggtcacttacatggctctgggtctagccctacgatat
gtccttgaagccttacgcaaaccttttggatcgaaaatgtattatttcgggattgctgca
ctagatagatttaaaaacagattgaaggactacccacagtattgtcagcacttggcttct
atcagtcactttatgcagtttccacatcatttacaggagtatatcgagtatggacagcag
tctagagaccctcctgtgaagatgcagggttctatcacaactcctggaagtattgcattg
gctcaggcccaggctcaggcccaggttccagcaaaagcacctcttgctggtcaagttaac
actatggtgaccacctcaacaaccactactgttgctaaaacagttactgtcaccaggcca
actggagttagtttcaagaaagatgtgccaccttccatcaatactacaaatatagatact
ctacttgtagccacagatcaaactgagagaattgtggagcccccagaaaatatccaagaa
aaaattgcttttattttcaacaatctctcacagtcaaatatgacacaaaaggttgaagag
ctaaaagaaactgtgaaggaagagtttatgccttgggtttcacagtacctagttatgaag
agggtcagcattgagccaaacttccacagcctgtattcaaacttccttgacacactgaag
aaccctgaatttaacaaaatggttctaaatgaaacctacagaaacatcaaagtgctcctg
acctctgataaagctgcagccaatttttcagatcgttccttgctgaagaacttgggacac
tggctaggaatgatcacgttagctaaaaataaacccatcttacacactgacttggatgtg
aaatctttgctgctagaagcttatgttaaaggacaacaagagttgctctatgtagtgcct
tttgttgccaaagtcttagagtctagcattcgtagtgtggtttttagaccaccaaacccc
tggaccatggcaattatgaatgtattagctgagctacatcaggaacatgatttaaagtta
aatttgaagtttgaaatcgaggtcctctgtaagaaccttgcattagatatcaatgagcta
aagcctggaaacctcctaaaggataaagatcgcctaaagaacttagatgaacaactctct
gctccaaagaaagatgtcaagcagccagaagaacttcctcccatcacaaccacaacaact
tctacaactccagcaaccagcactacctgtacagccacagttccaccacagccacagtac
agctaccatgacatcnatgtctattccttggcaggtctggcaccacacataccttttccc
tcccagattcctttgtttcaggcccatcctcagttaaagcagtgtgtacgtcaagcaatt
gaacgggctgtccaggagctggtccatccagtggtggataggtcgattaagattgctatg
accacttgtgaacaaatagtcaggaaggactttgccctggattctgaggaatctcgaatg
cgaatcgcagctcatcacatgatgcgtaacttgacagctggcatggctatgattacctgc
agggagcctttgctgatgagtatttctaccaacctcaaaaatagttttgcctcagccctt
cgtactgcatcccaacaacaaagggaaatgatggatcaggcagctgctcagttagctcag
gacaactgtgaattagcttgctgttttattcagaagactgcggtagaaaaagcaggccct
gaaatggacaagagattagcaactgaatttgagctgagaaaacatgctaggcaagaagga
cgacgatactgtgatcccgttgtattaacctatcaagctgagcgaatgccagagcaaatc
aggctgaaagttggtggtgtggacccaaagcagctggctgtttatgaagagtttgcacgc
aatgtgccgggcttcttgcctacgaatgacttaagtcagcctacaggatttttagctcag
cccatgaagcaagcttgggcaacagatgatgtagctcagatttatgataagtgcattaca
gaactggagcagcacctacatgctattccaccaactttggccatgaaccctcaagctcaa
gctcttcgaagtcttttggaagttgtagtattatctcgaaactctcgagatgccatcgct
gctcttggtttactccagaaggctgtagagggcttattagatgccacaagtggtgctgat
gctgacttattgctgcgctacagagaatgccatctcttggtactaaaagctctgcaagat
ggcagggcatatggatctccatggtgcaacaaacagatcacaaggtgcctaattgaatgt
cgagatgaatataaatataatgtggaggctgtggagttgctaattcgcaatcatttggtt
aacatgcagcagtatgatctacacctagctcagtcaatggaaaatggtttaaactacatg
gctgtggcatttgctatgcaattggtcaaaatcctgctggtggatgaaaggagtgtttcc
cacgttactgaggcagatctattccacaccattgaaaccctcatgaggattaatgctcat
tccagaggcaatgctccagaaggattgccccagctgatggaagtagtgcgatccaactat
gaagcaatgattgatcgtgctcatggaggccctaactttatgatgcattctgggatctct
caagcctcagagtatgatgaccctccaggcctgagggagaaggcagagtatcttctgcgg
gaatgggtgaatctctaccattcagcagcagctggccgtgacagtaccaaagctttctct
gcgtttgttggacagatgcaccagcaaggaatactgaagactgatgacctcatcacaagg
ttctttcgtctgtgcactgaaatgtgtgttgaaatcagttaccgtgctcaggctgagcag
cagcacaatcctgctgctaatcccactatgatccgagccaagtgctatcacaacctggat
gcctttgtccgactcattgcactgctagtgaagcactcaggggaggctaccaacactgtc
acaaaaattaatctgctgaataaggtccttggtatagtagtgggagttcttctacaggat
catgatgttcgacaaagtgaattccagcagcttccctaccatcgaatttttatcatgctg
ctcttggaactcaatgcacctgagcatgtgttggaaactattaattttcagacacttaca
gctttctgcaatacattccacatcttaaggcctaccaaagctcctggctttgtgtatgcc
tggcttgaactgatctcacatcggatatttattgcaagaatgctggcacatacgccacag
cagaagggatggcctatgtatgcacagctactgattgatttattcaaatatttagctcct
ttccttagaaatgtggaactcaccaaacctatgcaaattctctacaagggtactctcaga
gtgctgctggttcttttgcatgattttccagagttcctttgtgattaccattatggattc
tgtgatgtgatcccacctaattgtattcagttaagaaatctgatcctgagtgccttccca
agaaacatgaggctcccagacccgttcactcctaatctgaaggtggatatgttgagtgaa
attaacattgcaccccggattctcaccaatttcactggagtaatgccacctcagttcaaa
aaggatctggactcctatcttaaaactcgatcaccagtcacttttctatctgatttacgc
agcaacctacaggtatccaatgagcctggcaatcgctacaaccttcagcttatcaatgca
ctggtgctctatgtaggaactcaggccattgcgcatatccacaacaagggcagcacacct
tccatgagcaccatcactcactcggcacacatggacatcttccagaacctggctgtggat
ttggacactgagggccggtatctcttcttgaatgcaattgcaaatcagctgaggtatcca
aatagccacactcactactttagctgcaccatgctgtacctttttgcagaggccaacact
gaagctatccaggaacagatcacaagggttcttttggaacggttgattgtaaataggcca
catccttggggtcttcttattactttcattgagctgattaaaaacccagcatttaagttc
tggaaccatgagtttgtacactgtgccccagaaattgaaaagttattccagtcggttgca
cagtgctgcatggggcagaagcaggcacagcaagtaatggaagggacaggggccagttag
DBGET
integrated database retrieval system
