Chitinophaga pollutisoli: WJU16_01020
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Entry
WJU16_01020 CDS
T10245
Name
(GenBank) efflux RND transporter permease subunit
KO
K18138
multidrug efflux pump
Organism
cpol Chitinophaga pollutisoli
Pathway
cpol01501
beta-Lactam resistance
cpol01503
Cationic antimicrobial peptide (CAMP) resistance
Brite
KEGG Orthology (KO) [BR:
cpol00001
]
09160 Human Diseases
09175 Drug resistance: antimicrobial
01501 beta-Lactam resistance
WJU16_01020
01503 Cationic antimicrobial peptide (CAMP) resistance
WJU16_01020
09180 Brite Hierarchies
09183 Protein families: signaling and cellular processes
02000 Transporters [BR:
cpol02000
]
WJU16_01020
01504 Antimicrobial resistance genes [BR:
cpol01504
]
WJU16_01020
Transporters [BR:
cpol02000
]
Other transporters
Electrochemical potential-driven transporters [TC:
2
]
WJU16_01020
Antimicrobial resistance genes [BR:
cpol01504
]
Gene sets
Multipdrug resistance modules
Multidrug resistance, efflux pump MexAB-OprM [MD:
M00718
]
WJU16_01020
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
ACR_tran
OEP
SecD_SecF_C
Motif
Other DBs
NCBI-ProteinID:
WZN41619
UniProt:
A0ABZ2YPD5
LinkDB
All DBs
Position
complement(259942..264486)
Genome browser
AA seq
1514 aa
AA seq
DB search
MFDTFIRRPVLSLVISLFIVLLGLLALFTLPVTQFPDIVPPSVTVTAKYTGANAEVCANA
VAIPLERAINGVPGMTYMTSVSSNNGNTLITIFFKVGTDPDQAAVNVQNRVSTIIDELPE
EVIKAGVTTEKEVNSMLLYLNVMSEDSTLDENFIYNFADINVLKELKRIDGVGFAEIMGA
KEYAMRVWLQPDRMLAYNVSADEVVQAIRRQNIEAAPGKTGESSDKEAQLLQYVLRYTGK
YFEPQQYADIIIRANPDGSVLRLKEIAEVEFGALTYGMVSKTDGKPSASIMLKQRPGSNA
QDVIDNVKARMEELKASSFPPGMTYNFNYDVSRFLDASIAEVVRTLFEAFILVGIVVFLF
LQDWRSTLIPILAIPVALIGTFAFMQLMGFSINLLTLFALVLSIGIVVDNAIVVVEAVHA
KMTETHLPAMQATLASMKEISGAVVAITLVMSAVFIPVAFLSGPVGVFYRQFSLTLAFAI
IISGINALTLTPALCALMLKHDPNGHMRTNPLQRFFNAFNRGYNKTENKYKGFVGAIAGK
RLLTLAMLIAFFVLTWGAAAILPGGFIPMEDQGMVYVNVTTPNGATVERTEKVLDSVQAV
AANMDAVESVSTLAGYSLVNEVAGASYGMGMINLKSWSDRKQSVDDIIADLKKQTRHIAD
ASIEYFPPPTVPGFGNASGFELRVLDRTGADDLEQVSEITNKFIAELEQRPEIGSAFTSF
DPAFPQYMIHVDQAMAAKKGVSIDNAMSTLQTLLGSFYASNFIRFGQMYKVMVQASPQYR
TKPEDVLLLHVKNDHGEMVPFSNFVRLERVYGPETLTRYNMYTSAMINGDAAPGFSSGDA
IKAIEETAAKVLPRGFSYEWSGMTREQVLSGNQAIYIFGICLLFVYLLLAAQYESFMLPL
PVLLSLPAGIFGAFLSLKLAGLENNIYAQVALVMLIGLLGKNAILIVEFAIQRQKQGLTV
VKSAIEGGVSRLRPILMTSFAFIAGLIPLVIASGAGAMGNRSIGTAAAGGMLIGTIFGVL
VIPGLYVLFSRIKVKRKQPKPAVVAVAVLLVFIGACKAPQPLVTPELPAIPQAAQDTVAP
VALLPVKEFFSDPYLQKLLDTARCNNVDALIAMQKMETVEAQLAMARRAWLPSVNAGVHA
GTEKFGKYTIDGVGNFDTNLSPNIDKDQRIPTPAVPDYFAGLRSAWEIDLWGKLKQQKEA
AYARFLATGEGRRLVFTQLTAQIASLYYHLLELDYELSVVEKNVILQESALETVKIQQEA
GRATSLAVQQFHAQLLNTKSLAFRIRQQRSDIENQLNALAGRFPQHIERSKNLLEAPIPA
KVAEGIPAKLLLARPDIRQAELELTAAKADVRAARASFFPALTLSASVGYNAFEPGLLFK
SPASIAYTALGGLTAPVFSQNQIRSRYRIATAEGMTAFYAYRQAIVNGYQEVSTSLQKVG
NSEQAYKLKEAEVLMLQNGVSTSRDLFATGYANYLEVINAQKNVLDAELALAQHRREVFD
GVIALYRALGGGAE
NT seq
4545 nt
NT seq
+upstream
nt +downstream
nt
atgttcgatacttttatcaggcggcccgtgttgtcgctggtgatctctttgtttatagtg
ctgctgggtctattggcgctcttcaccctgccggtgacccagttccccgatatcgtaccg
ccctcggtaacggtaacggcaaaatataccggcgccaacgccgaagtgtgcgccaacgcc
gtggccattcccctggaaagggccatcaacggcgttccgggtatgacgtacatgacgtcc
gtatcctccaacaacggtaacacgctcattaccatcttcttcaaagtagggacagatccc
gatcaggccgcggtgaacgtacagaaccgcgtgtctaccattatcgacgaattgccggaa
gaagtaatcaaagccggggttacaacggagaaggaagtaaactccatgctgttgtacctc
aacgtgatgagcgaagactccacgcttgacgagaatttcatctacaacttcgccgacatc
aacgtgctgaaggagctgaaacgtattgacggggtgggattcgcggaaatcatgggcgcc
aaggaatatgccatgcgcgtatggctgcagcccgaccggatgctcgcctacaacgtatcg
gccgatgaagtggtacaggccatccgccgccagaacattgaagcggcaccggggaagacc
ggtgaaagctctgataaggaagcgcaactgctgcaatatgtactccggtataccgggaaa
tatttcgagccgcagcaatacgccgatatcatcatccgcgccaaccccgacgggtcggtg
ctgcggctgaaggaaattgcggaagtggagtttggcgctttgacatatggtatggtgtcg
aaaacagatggcaagccatcggcctctatcatgctcaagcagcgtccgggttccaatgcg
caggatgtgatcgataatgtgaaggcaaggatggaggaactgaaggcatcatctttcccg
ccgggtatgacctacaatttcaactacgacgtttcccgctttctggatgcttccatcgcg
gaagtggtgcgtacgttgttcgaggcgtttatcctcgtggggatcgtggtattcctcttc
ctgcaggactggcgttcgaccctgatccctatcctggcgattccggtggcgttgatcggt
acatttgcgtttatgcagctgatgggcttctccatcaacctgctgacgctgttcgcgctg
gtgctctcgatcgggattgtggtggataatgccattgtggtggtggaagcggtgcatgcg
aagatgacggaaacgcatttgcccgccatgcaggccacgctggcatccatgaaggagatc
agtggcgcggtggtggccattacgctcgtgatgtcggcggtatttatccccgtggcattc
ttaagcggccccgtgggcgtgttctaccggcaattctcgctgacgctggcattcgccatc
atcatttccgggatcaacgccttgacgctgacgcccgcgctttgcgcgctcatgctgaag
catgaccccaacggccacatgcgcaccaacccgctgcaacgtttcttcaacgctttcaac
cgcggatacaacaaaacggaaaataaatacaaaggcttcgtgggcgccatcgcaggtaag
cgattactgacgctggccatgctcatcgcgttctttgtgctcacatggggcgcggcggcg
atcctgccagggggcttcattcccatggaggaccagggcatggtatacgtgaacgtgacc
acaccgaacggcgctaccgtagaacgtaccgaaaaggtactcgattcggtgcaggcagtt
gcggctaacatggatgccgtggaatccgtatccacgctcgccggctatagcctggtgaac
gaggtggccggtgcttcgtatggtatggggatgatcaacctcaaatcctggagcgaccgg
aagcagtccgtcgacgatatcatcgcggacctgaaaaagcagacgcgccatatcgcggac
gcatccatcgaatacttcccgccgcccacggtgccgggcttcggtaacgccagcggcttc
gagctgcgtgtgcttgaccgcaccggcgccgacgacctggagcaggtgtcggagataacg
aacaaattcatcgccgagctggaacaacgccccgaaatcgggagcgccttcaccagcttc
gacccggctttcccgcaatacatgattcatgtggaccaggccatggcggcgaaaaaaggc
gtgagcatcgacaatgcgatgagcaccctgcaaacgctcctcggcagcttctacgccagc
aacttcatccgtttcgggcagatgtacaaggtgatggtacaggcctcgccgcagtaccgc
accaagccggaagatgtgctgctgctgcatgtaaagaacgatcatggcgaaatggtgcct
ttctccaacttcgtccgcctcgaaagggtatacggaccggaaacactcacgcgctacaac
atgtacacctccgccatgatcaatggtgacgcggcgccaggcttctccagcggcgacgcc
atcaaggcgatcgaggaaacggcggcgaaagtgctgccgcgcggcttctcctacgaatgg
agcgggatgacgcgcgaacaggtgctgtctggcaaccaggcgatttacattttcggcatc
tgcctgttattcgtatacctgttgctggccgcgcagtatgagagcttcatgctgccgctt
ccggtattgttatcgctgcctgcggggatattcggggcattcctttcgctgaagctcgcc
gggctggagaacaacatttacgcacaggtggcgttggtgatgctgatcggtttgctgggc
aagaacgcgatcctgatcgtggaattcgcgattcaaaggcagaagcagggcctcactgtg
gtgaagtccgccatagaaggcggcgtgagccgtctacgcccgatccttatgacgagcttc
gcgttcatcgcgggtctgatcccgctggtgatcgccagtggcgccggcgccatggggaac
cgctccatcggtacggccgcagcaggcgggatgcttatcgggaccatcttcggggtgctc
gtcattcccggtttgtacgtccttttctcccgcattaaagtgaaaagaaagcaaccaaaa
ccagcggtggtggcggtagcggtattgctggtatttatcggcgcctgtaaggctccccag
cccctcgtgacgccggaactgcccgcgattccgcaagcagcgcaggatacggtggcgccc
gtggcgttgctgccggtgaaggaatttttctccgatccttacctgcaaaaactgctcgat
accgcacgctgcaataacgtggatgcgctcatcgccatgcagaaaatggaaacggtggag
gcgcaactggccatggcgcgccgcgcctggctgccttcggtcaacgcaggtgtgcatgcc
ggtacggagaaattcgggaaatatacgatcgacggggtggggaatttcgataccaatctg
tcgcccaatatcgataaagaccagcgcatccccacgccggcggttccggattatttcgca
ggactgcgcagcgcctgggaaatcgacctgtggggtaagctgaagcagcagaaagaagcc
gcctatgcgcggttcctggctaccggagaaggccgcaggctcgtatttacgcagctgacg
gcccagatcgcttcactgtattatcatttgttggaactcgattatgaattgtcggtagtg
gagaagaacgtgatactgcaggaatccgcgttggaaaccgttaagatccagcaggaagcg
ggcagggccacttcgctggctgtgcagcaattccatgcgcagctgctcaataccaaaagc
ctggctttccgtatccggcagcagcgaagcgatatcgaaaaccagctgaacgcgctggcg
ggccgtttcccgcaacatattgaaagatcgaaaaacctgctggaggcgcccatccccgcg
aaagtggcggaaggcatccccgcgaagcttctgctggcgcggccggatatccggcaggcg
gaactggagcttacggcggcaaaagcggatgtaagagcggcgcgcgcgtcgtttttcccg
gcgctgacgctgagcgcctcggtagggtacaacgctttcgaaccgggattgctcttcaaa
agccccgcgtctatcgcgtatacggcgctgggagggctcacggcgccggtgttcagtcaa
aaccagatccggtcgagataccggatcgcgactgccgagggcatgaccgcgttttacgcg
tatcgccaggccatcgtaaacggataccaggaagtatccacctcgctgcaaaaagtcggc
aacagcgagcaggcatataagctgaaagaagcggaagtgctgatgctgcaaaacggcgta
tctacgtcccgcgatctgttcgcgacagggtatgccaattatttggaagtgatcaatgcc
cagaagaacgtcctcgatgcagaactggctctggcgcagcaccggcgtgaagtgttcgac
ggtgtaattgcgctatacagagccttgggcggaggtgcggaatag
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