Crocodylus porosus (Australian saltwater crocodile): 109310438
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Entry
109310438 CDS
T07440
Symbol
CNOT1
Name
(RefSeq) CCR4-NOT transcription complex subunit 1 isoform X1
KO
K12604
CCR4-NOT transcription complex subunit 1
Organism
cpoo
Crocodylus porosus (Australian saltwater crocodile)
Pathway
cpoo03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
cpoo00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
109310438 (CNOT1)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
cpoo03019
]
109310438 (CNOT1)
Messenger RNA biogenesis [BR:
cpoo03019
]
Eukaryotic type
mRNA surveillance and transport factors
mRNA cycle factors
P-body specific factors
109310438 (CNOT1)
mRNA degradation factors
3'-5' decay
Ccr4-NOT complex
109310438 (CNOT1)
BRITE hierarchy
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
CNOT1_CAF1_bind
CNOT1_TTP_bind
CNOT1_HEAT
CNOT1_1st
DUF2891
Med13_C
Motif
Other DBs
NCBI-GeneID:
109310438
NCBI-ProteinID:
XP_019391113
Ensembl:
ENSCPRG00005000725
LinkDB
All DBs
Position
Unknown
AA seq
1353 aa
AA seq
DB search
MNLDSLSLALSQISYLVDNLTKKNYRASQQEIQHIVNRHGPEADRHLLRCLFSHVDFSGD
GKSSGKDFHQTQFLIQECASLITKPNFISTLSYAIDNPLHYQKSLKPSPHLFAQLSKVIK
LSKVQEVIFGLALLNSFSSDLRGFAAQFIKQKLPDLLRSYIDADVSGNQEGGFQDIAIEV
LHLLLSHLLFGQKGAFGVGQEQIDAFLKTLRRDFPQERCPVVLAPLLYPEKRDILMDRIL
PDSGGIAKTMMESSLADFMQEVGYGFCTSVEECRNIIMQFGVREVTASQVARVLGMMART
HSGLTDGIPLQSISAPGSGIWSDGKDKSDGTQAHTWNVEVLIDVLKELNPSLNFKEVTYE
LDHPGFQIRDNKGLQIVVFGIQRGLGMEVFPVDLIYRPWKHAEGQLSFIQHSLINPEIFC
FADYPCHTVATDILKAPPEDDNREIATWKSLDLIESLLRLAEVGQYEQVKQLFSFPIKHC
PDMLVLALLQINTSWHTLRHELISTLMPIFLGNHPNSAIILHYAWHGQGQSPSIRQLIMH
AMAEWYMRGEQYDQAKLSRILDVAQDLKALSMLLNGTPFAFVIDLAALASRREYLKLDKW
LTDKIREHGEPFITACMTFLKRRCPSILGGLAPEKDQPKSAQLPPETLATMLACLQACAG
SVSQELSETILTMVANCSNVMNKARQPPPGVMPKGRPPSASSLDAISPVQIDPLAGMASL
SLGGSAAPHTQSMQGFPPNLGSAFSTPQSPAKAFPPLSTQNQTTGFSGIGGLSSQLPVGG
LTTGSLTGIGTGALGLPAVNNDPFVQRKLSTSGLNQPTFQQSKMKPSDLSQVWPEANQHF
SKEIDDEANSYFQRIYNHPPHPTMSVDEVLEMLQRFKDSNIKREREVFNCMLRNLFEEYR
FFPQYPDKELHITACLFGGIIEKGLVTYMALGLALRYVLEALRKPFTSKMYYFGIAALDR
FKNRLKDYPQYCQHLASISHFIQFPHHLQEYIEYGQQSRDPPVKMQGSITTPGSIALAQA
QAQAQVPAKAPLAGQVSTIVTTSTTTTVAKTITITRPTGVSFKKDVPPSINTTNIDTLLV
ATDQTERIVEPPENVQEKIAFIFNNLSQSNMTQKVEELKETVKEEFMPWVSQYLVMKRVS
IEPNFHSLYSNFLDTLKNPEFNKMVLNETYRNIKVLLTSDKAAANFSDRSLLKNLGHWLG
MITLAKNKPILHTDLDVKSLLLEAYVKGQQELLYVVPFVAKVLESSVRSVVFRPPNPWTM
AIMNVLAELHQEHDLKLNLKFEIEVLCKNLALDINELKPGNLLKDKDRLKNLDEQLSAPK
KDVKQPEELPPITTTSKHSSGFECILDVQSYVF
NT seq
4062 nt
NT seq
+upstream
nt +downstream
nt
atgaatcttgactcgctttcgctggccttgtctcaaatcagctacctggtggacaattta
accaagaaaaactacagagccagccagcaggaaatacaacatattgtgaatcgacacggt
cccgaggcagacaggcatttacttcgctgtctattctcacatgtggatttcagtggcgat
ggtaaaagcagtggtaaagatttccatcagactcagtttctgatccaagagtgtgcatcc
ctgattacaaagccaaactttatctcgacgctgtcctacgccattgacaatccattgcac
tatcaaaagagtctaaagccttcaccccatctatttgcccaactgagtaaagttatcaaa
ttaagtaaagttcaagaggtgatttttggtcttgctttactgaactctttcagctcagat
ctcagaggttttgcggctcagtttatcaaacagaaacttccagatcttctgcgctcttac
attgacgcagacgtcagtggaaatcaagaaggtggcttccaagatattgcaatagaagtc
ctgcaccttctcctctcccatctcctttttgggcagaagggagcctttggggttggacag
gaacagattgacgctttccttaaaacattacgtagagattttccccaagagcgctgtcct
gtggtgcttgcaccacttctataccctgaaaaacgggacattctaatggacaggatcctg
cctgattctggagggatagccaaaaccatgatggagagctctttggcagactttatgcaa
gaagtaggctatggcttttgtacaagtgttgaagaatgtcgcaatataatcatgcagttt
ggtgtgcgggaggtcacagcttctcaggttgccagagttttgggaatgatggcccgaact
cattcagggttgacagatggtattccattacaatctatctcagctcctggaagtgggatc
tggagtgatggaaaagacaaaagtgatggaacacaagctcacacctggaatgtggaggtt
ttaatagatgttcttaaagagttgaatcctagtttgaacttcaaggaagtaacctatgaa
ttggaccacccagggtttcaaatccgtgacaacaagggtctgcagattgtggtgttcggc
atccagagagggctaggcatggaagtcttcccagttgatctcatatataggccttggaaa
catgcagagggccagctctccttcattcagcattccctcataaatccagagatcttctgt
tttgctgactacccctgtcatactgttgccacagacatccttaaagcgccaccagaggat
gacaatcgagaaattgccacatggaagagcctggatttgatcgaatccttgctgcgtttg
gcagaggtggggcagtatgagcaggttaagcagctcttcagttttcctatcaagcactgc
ccagacatgttggtattggccttattacagatcaacacttcctggcataccttgcgccat
gagctcatctctacacttatgccaatttttcttggcaatcaccccaactctgccattatt
ttgcactatgcatggcatggacagggtcagtctccttcaattcgccaacttatcatgcat
gcaatggcagagtggtacatgagaggggagcagtatgatcaggcaaaactgtcacgcatt
cttgacgtggcgcaagacttgaaggccttgtcaatgctgctcaatggtactccatttgcc
tttgttattgaccttgctgcacttgcctctcgacgggaatacctcaagcttgacaaatgg
ctcacagataaaattcgggagcatggggagcccttcatcacagcctgtatgactttctta
aagagacgatgcccatctatcctgggtggccttgccccagaaaaggaccagcccaaaagt
gctcagcttccgccagaaactctagcgaccatgttggcttgcttacaagcttgtgccggg
agtgtttctcaggagctatcggagaccatcctcaccatggtagcgaactgcagtaatgtc
atgaacaaagctagacagccaccacctggagtcatgcccaagggacgtccacctagtgct
agcagtttggatgctatttctcctgtacagattgacccgcttgctgggatggcatctctt
agtttaggtggttcagcagctccacatacccagagtatgcaaggctttcctcctaacttg
ggctctgctttcagcacacctcagtcaccagcaaaagcatttcctcccctttccacccaa
aaccagaccacaggttttagtggcattggaggactctcttcacagcttccagtaggtggt
cttactacgggtagcctgactggtataggaactggggcccttggcctccctgcagtgaac
aatgatccattcgtgcaaaggaaactgagcacatctggactgaaccagcctacattccag
cagagtaagatgaaaccttcggatttatctcaggtgtggccagaggcaaatcagcacttt
agcaaagaaatagatgatgaggcaaacagctactttcagcgcatttataaccatccacca
cacccaaccatgtctgtagatgaggtattagaaatgctacagagatttaaagactccaac
attaaacgggaacgagaagtgtttaactgtatgctgaggaacttgtttgaggagtaccga
tttttcccccagtacccagataaagagctgcacataacagcctgcctctttggtgggata
atagagaaaggactggttacttatatggcattgggccttgccctgcgctatgttcttgaa
gccttacgaaagccttttacatccaaaatgtactattttggtattgctgcactagataga
tttaaaaatagattgaaggactatccccagtattgtcagcacttggcttctattagtcac
tttatacagttccctcatcacctacaggagtacattgaatatggacagcaatccagagat
cctcctgtgaagatgcagggttcaatcaccacccctggaagtattgcacttgcccaggcc
caagcccaggcccaggttccagcaaaagctcctcttgctggtcaagtcagcactatagta
accacctcaaccaccaccactgttgcaaaaaccattacaatcacccgaccaactggagtc
agcttcaaaaaagatgttccgccttccattaatactaccaatattgataccttgctagtt
gcaacagatcaaacagagagaattgtggaacctccagaaaatgtccaggaaaaaatcgca
ttcatcttcaacaatctctctcagtcaaacatgacacagaaggttgaggagctgaaggaa
actgtgaaagaagagttcatgccttgggtttcacagtaccttgtgatgaaaagagtcagt
atcgagccaaactttcacagcttgtattcaaacttccttgatactcttaagaatccagaa
tttaataagatggttctgaatgaaacctatagaaacatcaaggtgctgctgacatctgat
aaggctgcagccaacttctcagaccgttctctgttaaagaaccttggccactggttggga
atgatcacgttggctaaaaataagcccatcttgcacacagatttggatgtgaaatcctta
cttctggaagcctatgtcaagggacagcaggagttgctttatgtagtgccatttgttgcc
aaagtcttagaatccagtgtcaggagtgtggttttcagacctccaaacccttggacgatg
gcaatcatgaatgtattagctgagctgcatcaagagcatgacttaaaactgaacctgaag
tttgagattgaggtattgtgcaagaaccttgcattagacatcaatgagctgaaacctgga
aacctcctgaaagataaggatcgactgaaaaatctggatgaacagttgtctgctccaaag
aaagatgtaaagcagccagaggaactaccacctatcacaacaaccagtaagcactcttca
ggttttgaatgcattttagatgtgcagtcttatgtcttttga
DBGET
integrated database retrieval system
