Crassaminicella profunda: K7H06_16570
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Entry
K7H06_16570 CDS
T07525
Symbol
rpoB
Name
(GenBank) DNA-directed RNA polymerase subunit beta
KO
K03043
DNA-directed RNA polymerase subunit beta [EC:
2.7.7.6
]
Organism
cprf
Crassaminicella profunda
Pathway
cprf03020
RNA polymerase
Brite
KEGG Orthology (KO) [BR:
cprf00001
]
09120 Genetic Information Processing
09121 Transcription
03020 RNA polymerase
K7H06_16570 (rpoB)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
cprf03021
]
K7H06_16570 (rpoB)
03400 DNA repair and recombination proteins [BR:
cprf03400
]
K7H06_16570 (rpoB)
Enzymes [BR:
cprf01000
]
2. Transferases
2.7 Transferring phosphorus-containing groups
2.7.7 Nucleotidyltransferases
2.7.7.6 DNA-directed RNA polymerase
K7H06_16570 (rpoB)
Transcription machinery [BR:
cprf03021
]
Prokaryotic type
Bacterial type
RNA polymerase
Core subunits
K7H06_16570 (rpoB)
DNA repair and recombination proteins [BR:
cprf03400
]
Prokaryotic type
SSBR (single strand breaks repair)
NER (nucleotide excision repair)
TCR (transcription coupled repair) factors
DNA-directed RNA polymerase complex (RNAP)
K7H06_16570 (rpoB)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RNA_pol_Rpb2_6
RNA_pol_Rpb2_2
RNA_pol_Rpb2_7
RNA_pol_Rpb2_3
RNA_pol_Rpb2_45
RNA_pol_Rpb2_1
Motif
Other DBs
NCBI-ProteinID:
QZY54635
LinkDB
All DBs
Position
complement(3575481..3579185)
Genome browser
AA seq
1234 aa
AA seq
DB search
MPHPIQVGKRKRMSYASIEEVAQMPNLIEIQSKSYEWFLKDGLREVFEDISPIQDYTGNL
ILEFIDYSLDGEPKYEIEECKERDVTYAAPLKVKVRLINKETGEVKEQEVFMGDFPLMTD
KGTFIINGAERVIVTQLVRSPGPYYAVQLDRTGKKLFSTTVIPNRGAWLEYETDSNDIIS
VRVDRTRKQPMTVLLRAMGFGSDAEIINLLGEDERLMHTLDKDNTKSQEEGLLEIYKKLR
PGEPPTVESAKSLIDSLFFDPKRYDLAKVGRYKYNKKLCISNRIATNVAAENVVNPYTGE
IYVEEGQKISRELAKVIENAGIKAVNVMGEEGKIVKVIGNHFVDIKEHIHFNIDGLNVEE
RVHFPVLKEILDTYTDENEIREALKERRKDLSPKNIIIDDMIASVSYVLNLAHGVGAVDD
IDHLGNRRLRSVGELLQNQFRIGLSRMERVVKERMTIQDIDVITPQALINIRPVAAAIKE
FFGSSQLSQFMDQTNPLAELTHKRRLSALGPGGLSRERAGFEVRDVHHSHYGRMCPIETP
EGPNIGLIGSLTTYGRINEYGFIEAPYRRVDKERDVVTETVDYLTADEEDPVIVAQANEP
LDEEGRFINRRVTARCKNGDIDVVPRDEVDYMDVTPKQMVSVATAMIPFLENDDANRALM
GSNMQRQAVPLLRTDAPIIGTGMEYIAARDSGVVVLAKHAGIIEKVSADEIVIKRDVDGG
RDRYKMLKFKRSNQGTCINQRPIVSKGERVEKGDSIADGPSTDTGEIALGRNLLIGFMTW
EGYNYEDAILLNERLVMEDALSSVHIEEYESEARDTKLGPEEITRDIPNVGEEALKDLDE
RGIIRIGAEVKSGDILVGKVTPKGETELTAEERLLRAIFGEKAREVRDTSLRVPHGESGI
IVDVKVFTRENGDELPPGVNVLVRCYIAKKRKINVGDKMAGRHGNKGVISRILPEEDMPF
LEDGTPLQVVLNPLGVPSRMNIGQVLEVHLGMAAKKLGWHVATPVFDGAREPDIREALRE
AGYPEDGKLQLYDGRTGMPFDNRVTVGYMYMLKLHHLVDDKIHARSTGPYSLVTQQPLGG
KAQFGGQRFGEMEVWALEAYGAAHTLQEILTVKSDDVVGRVKAYESIVKGENIPEPGVPE
SFKVLIKELQSLALDVKVLTSEDAEIEIKESIDDDGSELDKILEGEEYQVPEEKYIDQNI
EEPEEEQVEEPGELEDIDESELEYPTDEIEDFNF
NT seq
3705 nt
NT seq
+upstream
nt +downstream
nt
atgccacatcctattcaggtcggaaaaagaaagagaatgagttacgcaagtattgaagaa
gttgcacagatgccaaatcttattgaaatccaaagtaaatcttatgaatggtttttaaaa
gatggattaagagaagtttttgaagatatttccccgattcaagattacactggtaatcta
atcctagaatttattgattattcattggatggggagccaaaatatgaaatagaagaatgt
aaagaaagagatgtaacttatgcggcaccactgaaagtaaaagttagactcatcaataag
gaaactggtgaagtgaaggaacaggaagtctttatgggagattttcctctcatgacagat
aagggaacttttatcattaatggagctgaaagagttattgtaacacagcttgtaagatct
ccaggcccatattatgcggtacaattagatagaacaggaaaaaaactcttttctacaaca
gtaataccaaaccgtggggcatggttggagtatgaaacagattcaaatgatattatatct
gtaagagttgacagaacaagaaaacaacctatgacagtattgcttcgcgcaatggggttt
ggtagtgatgcagaaattattaatcttttaggtgaagatgagagattgatgcatacctta
gataaggataatactaaatcacaagaagagggtttactagaaatctacaaaaagcttaga
cctggtgaaccaccaactgtggaaagtgcaaagtcattaattgattcactattttttgat
ccaaaacgttatgacttagcaaaggtaggacgctataaatataataaaaagttatgtatt
tcaaacagaattgcaaccaatgttgctgcagagaatgtggtcaatccttatacaggtgaa
atttatgtagaggaaggacaaaagattagcagagaactagctaaagtaatagaaaatgct
gggattaaagcagtaaatgttatgggcgaagaaggaaaaattgtaaaagtaattggtaac
cattttgttgatattaaggaacatattcacttcaatatagatggtttgaatgtagaagag
agagtacattttcctgtactaaaggaaatattagatacttatacagatgaaaatgagata
agagaagcgttaaaagagagaagaaaagatctatcacctaaaaatatcattatagatgat
atgatagcttctgtaagttatgtacttaatcttgctcatggcgtaggagcagtagatgac
attgatcatttaggaaatagaagactacgttcagtgggagaacttttacaaaaccaattt
agaataggtctttctagaatggagagagttgtaaaggaaagaatgactattcaagatatt
gatgtaattacaccgcaggccttaattaatattagacccgtggcagctgctattaaagaa
ttctttggaagcagtcagttatcacaatttatggatcaaacaaatccattagcagaactt
acgcataaaagaagattatcagcactaggacctggtggactttctcgtgaaagagcagga
tttgaagtgcgtgacgttcatcattctcattatggacgtatgtgtcctatagaaacgcca
gagggaccgaacatcggtttgattggttcattgactacatatggtagaattaatgaatat
ggatttatcgaggcaccttatagaagggtagataaagaaagagacgttgtaacagaaaca
gttgattacttaacagcagatgaagaagatccagtaattgttgctcaagccaatgagccg
ttagatgaagaaggaagattcattaatcgtagggttactgcaagatgtaaaaatggtgat
atagatgttgtaccaagagatgaagtagactatatggacgtaacaccaaagcaaatggtt
tctgttgcaacagcaatgattccattcttagaaaatgacgatgccaaccgtgcacttatg
ggatcaaacatgcagcgtcaggctgtaccacttttgagaacagatgcaccaattattgga
actggtatggagtatattgcagcaagagattctggagtagttgttcttgcaaagcatgca
ggaattattgaaaaggtttctgctgatgaaattgtcatcaaaagagatgtagatggtggt
cgtgatcgatataaaatgcttaaattcaagcgttcaaatcaagggacatgtatcaaccaa
agacctattgtaagtaaaggtgaacgtgtagaaaaaggagattctattgcagatggtcct
tctacagacactggagaaattgcattaggaagaaacctacttataggttttatgacatgg
gaaggatacaattatgaggatgccattcttctaaatgaaagattggttatggaagatgca
ttatcttcagttcatatagaagaatatgagtctgaagcaagagatacaaagttagggcca
gaagaaattacaagggatattccaaatgtaggagaagaagctttaaaagatctagatgaa
agaggaattattcgaatcggagcagaagtaaaatcaggagatatattagttggtaaagtt
actccaaagggagaaactgagcttacagctgaggaaagacttcttcgtgctatatttgga
gaaaaggctagagaagttagagatacatctttaagagtgcctcatggtgaaagtggaatc
attgtagatgtgaaagtatttacaagagaaaatggagatgaattgccaccaggagtaaat
gttttagtaagatgttatatagctaaaaagagaaagattaatgttggagataaaatggca
ggacgtcatggtaataaaggggttatttcaagaatattaccagaagaagatatgccgttc
ttagaggatggaacaccactacaagttgttttaaatccactaggagtaccatctcgtatg
aatattgggcaggtacttgaagtgcatcttggtatggcagcgaaaaaattaggctggcat
gttgcaactcctgtattcgatggagcaagagaaccagatatccgagaagctttaagggaa
gcaggatatccagaagatggaaagcttcagctttatgatggaagaacaggaatgcctttc
gataatagagtaactgtagggtatatgtatatgttaaagcttcaccatttagtagatgat
aagattcatgctcgtagtacaggaccttattctttagttacacagcaacctttaggtggt
aaggcacaattcggaggacaaagatttggtgagatggaagtatgggcattagaagcttat
ggtgctgctcacacgcttcaagaaatattaacagttaaatctgatgatgttgttggacgt
gtaaaagcatatgaatctattgtaaaaggtgaaaatattccagaaccaggagtaccagaa
tcatttaaagtattaattaaagagctacaaagtttagctttagatgtaaaggtgcttaca
tcagaagatgcagaaattgaaataaaagaatcaatagatgatgatggaagtgaactagat
aaaattcttgagggcgaagaatatcaagtacctgaagaaaaatatattgatcaaaatata
gaagaaccagaagaggaacaagttgaagaaccaggtgaattagaagatattgatgaatca
gaattggaatatccaactgatgagattgaggattttaatttttaa
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integrated database retrieval system
