Colwellia psychrerythraea: CPS_4769
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Entry
CPS_4769 CDS
T00258
Symbol
rpoB
Name
(GenBank) DNA-directed RNA polymerase, beta subunit
KO
K03043
DNA-directed RNA polymerase subunit beta [EC:
2.7.7.6
]
Organism
cps
Colwellia psychrerythraea
Pathway
cps03020
RNA polymerase
Brite
KEGG Orthology (KO) [BR:
cps00001
]
09120 Genetic Information Processing
09121 Transcription
03020 RNA polymerase
CPS_4769 (rpoB)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
cps03021
]
CPS_4769 (rpoB)
03400 DNA repair and recombination proteins [BR:
cps03400
]
CPS_4769 (rpoB)
Enzymes [BR:
cps01000
]
2. Transferases
2.7 Transferring phosphorus-containing groups
2.7.7 Nucleotidyltransferases
2.7.7.6 DNA-directed RNA polymerase
CPS_4769 (rpoB)
Transcription machinery [BR:
cps03021
]
Prokaryotic type
Bacterial type
RNA polymerase
Core subunits
CPS_4769 (rpoB)
DNA repair and recombination proteins [BR:
cps03400
]
Prokaryotic type
SSBR (single strand breaks repair)
NER (nucleotide excision repair)
TCR (transcription coupled repair) factors
DNA-directed RNA polymerase complex (RNAP)
CPS_4769 (rpoB)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RNA_pol_Rpb2_6
RNA_pol_Rpb2_1
RNA_pol_Rpb2_3
RNA_pol_Rpb2_7
RNA_pol_Rpb2_45
RNA_pol_Rpb2_2
7TMR-HDED
Motif
Other DBs
NCBI-ProteinID:
AAZ24907
UniProt:
Q47UV9
LinkDB
All DBs
Position
complement(5051564..5055592)
Genome browser
AA seq
1342 aa
AA seq
DB search
MAYSYFEKKRIRKDFGKSVQVMEYPFLLSIQLDSFRKFIDTDPTGETGLEAAFRSIFPIK
AYSGSSELQYVSYRLGEPLFDVKECQIRGVTYSAPLRVKLRLVVYDKEAAAGTVKDIKEQ
EVYMGEIPLMTDNGTFVINGTERVIVSQLHRSPGVFFDHDKGKTHSSGKVLYNARVIPYR
GSWLDFEFDPKDNLFVRIDRRRKLPASIILRALEYSTEEILAMFYDTTDYTIKGDKLIMD
LIPERLRGETAIFDISIKKGEVLVESGRRITARHIRALSKAKLEKLEVPADYIVGRVLSK
AYIDKSTGEVIAEANAIITLELLAELSQAGHKVLSTLYMNEFDVGSYMSDTLRVDSSTNK
LEALVEVYRMMRPGEPPTKDAAEGLFSNLFFASERYDLSTVGRMKFNRRVGNADDVGTGI
LSKEDIISVMKTLIGIRDGKGEVDDIDHLGNRRIRSVGEMAENQFRVGLVRVERAVRERL
SLGDLDAIMPQDLINAKPISAAVKEFFGSSQLSQFMDQNNPLSEVTHKRRISALGPGGLT
RERAGFEVRDVHPTHYGRVCPIETPEGPNIGLINSLSCYARTNDFGFLETPYRKVIDGLV
TDEIDYLSAIEEGNFVIAQANAERNDSNKLVQDLVNCRHRNEFILKASAEVQYMDVSPQQ
IISVAASLIPFLEHDDANRALMGSNMQRQAVPTLRVDKPLVGTGMEKVVAVDSGVTAVAK
RGGVVSYVDASRIVVKVNENEMHAGEAGIDIYNLTKYTRSNQNTCINQRPVCRMGEPVVR
GDVLADGPSTDMGELALGQNMRIAFMPWNGYNFEDSMLLSERVAIEDRFTTIHIQELTCI
ARDTKLGSEEITADIPNVGESALSKLDEAGVVYIGAEVNGGDILVGKVTPKGETQLTPEE
KLLRAIFGEKAADVKDSSLRVPNSVKGTIIDVQIFTRDGVEKDARAVEIEQMQLKEVKKD
LGDELSILEDGIYARTKKLLLSAGLNESDLTSMSRDKWLTQNLADEGQQAELEQIAEQFD
NIKEDFDKKFEVKRRKITQGDDLQPGVLKIVKVYLAVKRHIQPGDKMAGRHGNKGVISNV
VPVEDMPYDQFGVPVDIVLNPLGVPSRMNIGQILETHLGMACRGIGEKINRMLEAQQEIH
KLRNFIQEVYNVGESRQVVDVASFSDDEVLRLAGNLRAGLPIATPAFDGAAEKEIKELFV
LADMPQSGQFVLTDGRTGREFERPVTVGYMYMLKLNHLVDDKMHARSTGSYSLVTQQPLG
GKAQFGGQRFGEMEVWALEAYGAAYTLQEMLTVKSDDVNGRTKMYKNLVDGDHRMEPGIP
ESFNVLLKEIRSLGINIELDKD
NT seq
4029 nt
NT seq
+upstream
nt +downstream
nt
atggcttactcatactttgagaaaaagcgaattagaaaggactttggtaaaagcgtacaa
gtaatggaatatccattcttgttgtccatccaactcgactctttccgcaagtttattgat
actgatccaacaggtgaaaccggtctagaggctgctttccgttctattttcccaattaaa
gcttattcaggtagctcggaattacaatatgtaagctatcgattaggtgaaccgttattt
gacgttaaagaatgtcaaatacgtggtgtaacttattcagcaccactgcgtgttaagtta
cgcttagtggtttacgataaagaagccgcagcaggtactgttaaagatatcaaagaacaa
gaagtgtacatgggcgaaatcccgttgatgacagataacggtactttcgtaatcaatggt
actgagcgtgttatcgtttcacaattacaccgttctcctggtgtattctttgatcacgat
aaaggtaaaactcactcatcaggtaaagtattatataacgcacgcgttattccttaccgt
ggttcatggttagactttgaattcgatccaaaagataacttatttgtacgtatagataga
cgtcgtaaattaccagcgtcaattatcttacgtgcattagaatattcgactgaagaaatt
ttggcgatgttctatgacacaactgactacaccattaaaggtgataagttgatcatggat
cttatccctgaacgtcttcgtggcgaaactgctatttttgatatttctatcaagaagggt
gaagtattagttgaatctggtcgtcgtattacagcacgtcatattcgcgctttatcaaaa
gcaaaattggaaaaactagaagtaccagcagattatatcgttggtcgtgttttatcaaaa
gcttacatcgacaaatctacaggtgaagtaattgctgaagcaaatgcaattatcacttta
gaattattagccgagcttagccaagcgggccataaagtattatctactttatacatgaac
gaatttgatgttggttcatacatgtcagatacacttcgtgttgatagttcaactaacaag
cttgaagctttagttgaagtataccgcatgatgcgtccaggcgagccaccaacgaaagac
gctgctgaagggttgttctctaacttattcttcgcatcagaacgctatgacttatcaacg
gtaggtcgtatgaagttcaaccgtcgtgttggcaatgcagatgatgttggtactggtatc
ttgtcaaaagaagatattatttcagtaatgaaaaccttaatcggcattcgtgacggtaaa
ggtgaagttgatgatatcgatcacttaggtaaccgtcgtattcgttctgttggcgaaatg
gctgaaaaccaattccgtgttggtcttgttcgtgttgaacgtgcagttcgtgagcgctta
agtcttggtgacttagatgcaatcatgccgcaagatttaatcaacgctaaaccaatttct
gcggcagtgaaagagttctttggctcatcacaattgtcacagtttatggatcagaacaac
ccgttatcagaagtaacgcataaacgtcgtatttctgccttagggccgggtggtttaacc
cgtgaacgtgctggttttgaagtacgagatgtacatccaacgcattacggtcgtgtttgt
ccaatcgaaacgccagagggtccaaacattggtttgatcaactcgctttcttgttacgca
cgaactaatgattttggtttcttagaaacaccataccgcaaagttattgacggtttagtg
actgatgaaattgattatttatcagcgattgaagagggtaactttgttatcgctcaggcg
aacgctgaacgtaatgatagcaacaagttagtacaagacttagttaactgtcgtcataga
aatgaatttatcttaaaagcttctgctgaagttcaatatatggacgtttctccacaacaa
attatttctgttgcggcgtcacttatcccattccttgaacacgatgatgcaaacagagcc
ttgatgggctcgaacatgcaacgtcaagctgtacctactttacgagttgataaaccgctt
gttggtactggtatggaaaaagtagtagctgttgattcaggtgtaactgcagttgccaaa
cgtggtggtgtagttagctatgttgatgcatcgcgcattgttgtaaaagttaatgaaaat
gaaatgcatgctggtgaagccggtattgatatttataacttaactaaatacacgcgttct
aaccaaaatacttgtatcaaccaacgtccagtgtgtcgtatgggtgagccagttgtacgt
ggtgatgtattagcggatggtccttcaactgatatgggtgaattggctttaggtcaaaac
atgcgtatcgcctttatgccgtggaatggttacaactttgaagattcaatgttgttatct
gaacgtgttgcaatagaggatagatttactactattcacattcaagagttaacgtgtatt
gcacgtgatactaaattgggtagtgaagaaattacggcagatattccaaacgtaggcgaa
tcagcattatctaaattagatgaagcgggtgttgtttatattggtgctgaagtaaatggt
ggtgacatcttagtaggtaaagttacaccaaaaggtgaaacacaacttacgccagaagaa
aaactactacgagcaattttcggtgagaaagctgctgacgttaaagatagttcattacgt
gtacctaactctgttaaaggtactatcatcgatgttcaaatattcacccgtgacggcgtt
gaaaaagatgctcgtgcagttgaaattgaacaaatgcaacttaaagaagttaagaaagat
cttggcgatgaattaagcattttagaagatggtatttacgcacgtactaagaagttattg
ttatctgctggtttaaatgagtctgacttaacgtcaatgtctcgtgacaagtggttaaca
caaaacttagctgatgaaggtcaacaagctgaacttgagcaaattgctgagcaatttgat
aatatcaaagaagattttgataagaagtttgaagttaagcgtcgtaagatcactcaaggt
gatgacttacaacctggcgttttaaaaatcgttaaggtttacttagctgttaaacgtcat
attcagcctggtgataaaatggctggtcgtcatggtaacaagggtgttatttcaaacgta
gtacctgttgaagatatgccatacgatcaattcggtgtaccagttgatatcgtattgaac
ccgttaggtgttccatcacgtatgaacattggtcagatcttagaaactcacttaggtatg
gcgtgtcgcggtatcggtgaaaagatcaaccgtatgttagaagcacaacaagaaattcac
aaactacgtaacttcattcaagaagtctacaatgtaggtgagtctcgtcaagtagttgat
gttgcaagcttctctgatgacgaagttttacgcttagcaggtaacttacgtgctggtcta
ccaattgctacaccagcatttgatggcgctgcagagaaagaaattaaagagttattcgtg
cttgctgatatgccacaaagtggtcagttcgtattaactgatggccgtaccggtcgtgag
tttgaacgtcctgttactgttggttatatgtatatgttgaaactaaaccatttagttgat
gacaaaatgcatgctcgttcaactggttcttactcactcgtaactcagcaaccacttggt
ggtaaagctcagttcggtggtcagcgtttcggtgagatggaagtgtgggcacttgaagca
tatggtgctgcttataccttgcaagaaatgcttacggttaagtctgatgatgttaacggt
cgtactaagatgtataaaaacttagtagatggtgatcatcgcatggaaccaggtattcct
gagtcattcaacgtattgttgaaagaaatccgctcgttaggtattaacatcgagttggac
aaagactag
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