Chiloscyllium punctatum (brownbanded bambooshark): 140453155
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Entry
140453155 CDS
T11285
Symbol
cnot1
Name
(RefSeq) CCR4-NOT transcription complex subunit 1 isoform X1
KO
K12604
CCR4-NOT transcription complex subunit 1
Organism
cpun Chiloscyllium punctatum (brownbanded bambooshark)
Pathway
cpun03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
cpun00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
140453155 (cnot1)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
cpun03019
]
140453155 (cnot1)
Messenger RNA biogenesis [BR:
cpun03019
]
Eukaryotic type
mRNA surveillance and transport factors
mRNA cycle factors
P-body specific factors
140453155 (cnot1)
mRNA degradation factors
3'-5' decay
Ccr4-NOT complex
140453155 (cnot1)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Not1
CNOT1_CAF1_bind
NOT1_connector
ARM_Cnot1
CNOT1_TTP_bind
DUF3819
CNOT1_HEAT
CNOT1_1st
SCRE
Motif
Other DBs
NCBI-GeneID:
140453155
NCBI-ProteinID:
XP_072403698
LinkDB
All DBs
Position
26:70653620..70815264
Genome browser
AA seq
2382 aa
AA seq
DB search
MNLDSLSLALSQISYLVDNLTKKNYKSSQQEISHIVNRHGPEADRHLLRCLFSHVDFSGD
GKSSGKDFHQTQFLIQECASLITKPNFISTLCYAIDNPLHYQKSLKPSPHLFTQLSKVLK
LSKVQEVIFGLALLNSSSSDLRGFALQFVKQKLPDLLRSYIDADVSGNQEGGFQDIAIEV
LHLLLSHLLFGQKGAFGVGQEQIDAFLKTLRRDFPQERCPVVLAPLLYPEKRDILMDRIL
TDSGGIAKTMDSSLADFMQEVGYGFCTSVEECRQIILQFGVRDVTASQVARVLGMMARTH
SGLTDGISLQSISAPSSGIWSDGKDKSDSAQAHTWNVEIFIDVVKEVNPNLNFKEVTYEL
DHPGFILRDSKGLQIAVYGIQKGMGIEVFPVDLIYRPWKHAEGQLSFIQHSLMNPDIFCF
ADYPCHTVVTDILKAPPEDDNREIATWKSLDLIETLLRLSELGQYEQVKQLFNFPIKHCP
DMLVLALLQINPTWHTLRHELISTLMPIFLGNHPNSAIILHYAWHGQGQSPSIRQLIMHA
MAEWYMRGEQYDQAKLSRILDVAQDLKALSMLLNGTPFAFVIDLAALASRREYLKLDKWL
TDKIREHGEPFIQACVTFLKRRCPSIMGGLAPEKEQPKSAQLPPETLATMLACLQACAGS
VSQELSETILTMVANCGNVMNKARQPPPGVMPKVRAPSTSSIETMSPVQVQIIDPLSGMA
SLTIGGSAASLTPSMQGFTTNLSSAFNTPQSPAKAFPPLSTPNQTTPFSGIGSLPSQLPG
SLGTGSLSGMGTGGLALPTVNTDPFGQRKMSTSGLNPQTFQQSKMKPSDLSQVWPEANQH
FSKEIDDEANSYFQRIYNHPPHPTMSVDEVLEMLQRFKDSNIKREREVFNCMLRNLFEEY
RFFPQYPDKELHITACLFGGIIEKGLVTYMALGLALRYVLEALRKPFDSKMYYFGIAALD
RFKNRLKDYPQYCQHLASIGHFLQFPHHLQEYIEYGQQSRDPPVKMQGSITTPGSIALAQ
AQAQAQAQNKTPLTRQVSAIVTTSTTTTVTKATTVTRPSGVSFKKDVPPSINTTNIETLL
VATDQAERIVEPPENIQEKVAFIFNNLSQSNMTQKVEELKETVKDEFMPWVSQYLVMKRV
SIEPNFHSLYSNFMDTLKNSDFNKMVLTETYRNIKVLLTSDKAAANFSDRSLLKNLGHWL
GMITLAKNKPILHIDLDVKSLLLEAYVKGQQEMLYVVPFVAKVLESSVRSMVFRPPNPWT
MAIMNVLAELHQEHDLKLNLKFEIEVLCKNLALDINDLKPGTLLKDKEKLTNLEEQLSAP
KRESKIPEELPVVVTTAAPVTQATTTTCTSTVPPQPQFSYHDINVYSLAALAPHITVNPN
IPLFQAHPQLKSYVRQAIERAVQELVHPVVDRSIKIAMTTCEQIVRKDFALDSEESRMRV
AAHHMMRNLTAGMAMITCREPLLMSIATNLKNNFATALRTASPQQREMMEQAAAQIAQDN
CELACCFIQKTAVEKAGPEMDKRLATEFELRKHARQEGRRYCDPVVLTYQAERMPEQIRL
KVGGVDPKQLAVYEEFARNIPGFLPSNDISQPTGFLAKPMQQAWATDDIAQIYDKCITEL
EQHLHAIPPTLAMNPQTQALRNLLEAVVMARNSRDAIAALGLLQKAVEGLLDATSGADPD
LLLRYRECHLLVLKALQDGRAYGSQWCNNKITRCLIECRDEYKYNVDAVELLIRHHLVNM
QQYDIHLAQSMENGLNYMAVAFAMQLVKFLLVDERSISHVTEADLFNTIETLMRISAHSR
GNAPEGLPQLMDLLRANYEAMMDRAHGGPNFMMHSGISQASEYDDPPGLREKAEYLLREW
VNLYHSAAAGRDSTKAFSAFVGQMHQQGILKTDDLITRFFRLCTEMCVEISYRAQQEQQH
NPTANPTMIRAKCYHNLDAFVRLIALLVKHSGEATNTVTKINLLNKVLGIVVGVLLQDHE
VRQSEFQQLPYHRIFIMLLLELNAPEHVLETINFQTLTAFCNTFHILRPTKAPGFVYAWL
ELISHRIFIARMLAHTPQQKGWPMYAQLLIDLFKFLAPYLRNVELTKPMQILYKGTLRVL
LVLLHDFPEFLCDYHYGFCDVIPPNCIQLRNLILSAFPRNMRLPDPFTPNLKVDMLSEIN
IAPRILTNFTGVMPPQFKKDLDSYLKTRSPVTFLSELRSNLQVSRTRVSNEPGNRYNIQL
INALVLYVGTQAIAHIHNKGSTPSMSTITHSAHMDIFQNLAVDLDTEGRYLFLNAIANQL
RYPNSHTHYFSCTMLYLFAEANTEAIQEQITRVLLERLIVNRPHPWGLLITFIELIKNPA
FKFWNHEFVHCAPEIEKLFQSVAQCCMGQKQAQQVMEGTGAS
NT seq
7149 nt
NT seq
+upstream
nt +downstream
nt
atgaatcttgactcgttatcgctggccttgtctcaaatcagctaccttgtggacaacctg
accaagaagaattacaaatccagccagcaggagatctctcatattgtgaaccgacacggg
cccgaggcagacagacacttattacgctgtctattctcgcacgtggatttcagtggcgat
ggtaaaagtagcggcaaagatttccatcagactcagtttctgattcaagagtgtgcgtcc
ctgattactaagccaaactttatctcgacgctgtgctacgccattgacaatccgctgcac
tatcagaagagcctgaagccttcaccccatctgtttactcagcttagtaaagtgctcaag
ttaagcaaggtccaagaggtcatctttggccttgcattgctgaattcttctagctcagat
ctgcgggggtttgctctccagttcgtgaaacagaaacttcccgatctcctgcgatcttac
atcgacgcagacgtaagcgggaaccaagaaggtggctttcaggatattgcaatagaagtc
ctacacctgctcctctcccatctgctgtttgggcaaaagggagcttttggtgttggacag
gaacaaattgacgcttttcttaagaccttgcgcagagattttccgcaagagcgttgtcct
gtggtgcttgcaccactactatatcctgaaaaacgggacattctgatggatagaatcctg
acagattcgggagggatagcgaaaacgatggacagctcactggcagactttatgcaagaa
gtaggctacggcttttgtacaagcgttgaagaatgccgccaaataattttgcagtttggt
gttcgggatgtgactgcatctcaggttgccagggtgctgggaatgatggctcggacgcat
tcaggcctgaccgatggcatttctttacaatctatatcagcccctagtagtggaatctgg
agtgatgggaaggataaaagtgactctgcacaagctcatacctggaatgtagaaatattt
attgatgttgtgaaagaagtgaatccaaacctaaattttaaagaagtgacttatgaactg
gatcacccaggattcatccttcgcgacagcaaaggtctacagatagctgtgtatggaatc
cagaaggggatggggattgaagtctttcctgttgatctcatctataggccttggaagcat
gcagaaggacagctatcgtttattcagcattcattaatgaacccagatatcttctgtttt
gctgactacccatgtcatactgtggtgacagacatcttgaaagctcctccagaggatgat
aaccgagaaattgctacatggaaaagcctggaccttattgagaccctactacgtctttca
gagctgggacagtatgagcaggtcaaacaactctttaacttcccaatcaagcactgcccg
gacatgctggtactggccttactgcagattaacccaacctggcacacactgcgccatgag
ctcatttccacactgatgccaattttcctgggcaatcatccaaattctgccattatcttg
cactatgcatggcacggacagggtcaatccccatcaatccgacagctgatcatgcatgca
atggcagagtggtacatgcgtggtgagcagtatgaccaggccaagctctcacgcattctc
gatgtagctcaagacttgaaggccttgtctatgctgctaaatggtactccgtttgccttt
gttattgatcttgctgcacttgcatctcgccgagaatacctcaaacttgataaatggtta
actgataaaattcgcgagcatggggaaccatttatccaggcatgtgtgacgttcctaaag
aggcgttgtccttccattatgggtggactggccccagaaaaggaacagcccaagagtgct
caactccctccagaaacactggccaccatgttggcttgcttacaagcctgtgcagggagt
gtttcacaggagctgtcagagaccattctcacaatggtggccaattgtggcaatgtcatg
aacaaggcccgtcagccgccacctggagtaatgcccaaggtccgcgcacctagtaccagc
agtatagaaaccatgtcacctgtacaggtacaaataattgacccgttgtctggcatggct
tcgttgactattggtggatcagcagcatcgctcactccaagtatgcagggttttactact
aatctgagttctgcattcaacacccctcaatcaccagcaaaagcctttccaccactctct
acaccaaatcagacaactcctttcagtggaattggcagtcttccttctcagctcccaggt
agtttgggtacagggagtttgagtggtatgggaactggtggacttgcactaccaactgtg
aacactgacccctttggacagagaaagatgagcacatctggactgaacccacagacattc
cagcagagtaagatgaaaccttctgacctctctcaggtatggccagaggcaaatcagcac
tttagcaaggagattgatgatgaagcaaatagctacttccagcgtatctacaaccatcca
ccccaccctaccatgtctgttgatgaggttttggaaatgctgcagaggtttaaggattcc
aacattaaacgtgaaagagaagtgtttaactgtatgctacgcaacctctttgaggagtat
cgcttcttcccccagtacccagataaagagctgcacatcaccgcctgcctgtttggtgga
attatcgaaaaggggctggtcacctatatggcattgggacttgcactgcgctatgttctt
gaagctttgcgcaaaccttttgactccaagatgtactactttggtattgctgcactagac
agatttaaaaatagattgaaggattatccacagtattgtcagcacttggcgtctattggc
cacttcttacagtttcctcatcatttacaggagtacattgagtatggccagcaatccaga
gaccctcctgtgaaaatgcaaggtagcatcacaactcctggcagtattgcattggctcag
gcacaggctcaagcacaggctcagaacaagacccccctcaccagacaagtcagcgccata
gtaaccacgtccacaaccactactgtcaccaaagccactacagttaccaggccgagtgga
gtgagctttaagaaagatgtcccaccctccatcaatacaactaacatcgaaacattgttg
gtggccacagaccaggcagagagaatagtagagccaccagagaatattcaagaaaaagtg
gcttttatcttcaacaacctgtcgcaatccaacatgacacaaaaggtggaagagttaaaa
gagacagtgaaagatgagtttatgccctgggtatctcagtatttggtcatgaagagagtt
agcattgaacctaattttcacagtctgtactccaactttatggacacgttgaagaattcg
gattttaacaaaatggtactcactgagacttacaggaacattaaggtattgttgacctct
gacaaggctgcagcaaacttttcagatcggtcattgctgaagaatcttggccattggcta
ggcatgatcaccttagccaaaaataagcccatcttgcacattgatctggatgtgaagtcg
ttgctgctggaggcttatgtgaaaggtcagcaggagatgctctatgttgtcccctttgtt
gccaaagttttagagtccagcgttaggagtatggtttttagacccccaaatccttggaca
atggccatcatgaatgtactagcagagctgcatcaagagcatgatttgaagttaaacctg
aagtttgaaattgaggtgctgtgtaaaaatctcgctttggacatcaacgacttgaagccc
ggaactttactaaaggacaaagaaaaattgaccaacctagaggaacagctttctgctcca
aaaagagaatccaaaataccagaggagttgcctgtagttgtcaccactgctgcaccagtg
actcaagccacaaccaccacgtgtacatccacagtccctccacaaccacagttcagctac
cacgacatcaatgtgtattcattggctgccttggctcctcacattacagtcaacccaaat
attccattattccaagcccaccctcagctgaagtcgtacgtccggcaggcaatagagcgt
gctgtgcaggagcttgttcatcctgttgttgaccgttccatcaagattgcaatgaccacg
tgtgaacagatagtcaggaaagattttgctctggattctgaggagtcacggatgcgcgtt
gcagcccatcacatgatgcgtaacctcaccgcaggaatggctatgattacatgcagggag
ccattattaatgagcatagctacaaacctaaagaataattttgccactgcattacggact
gcttctccacagcaaagggaaatgatggagcaagcagcagcacagatagcacaagacaac
tgcgagctggcctgttgctttattcagaaaacagctgttgaaaaagcaggtcctgaaatg
gacaaacgccttgccacagaatttgaacttcggaagcatgctaggcaggagggtcgtcgt
tactgtgatcctgtggtgctcacttaccaggctgagcgcatgcctgaacaaatcagattg
aaggtgggaggtgtagatcccaagcaactagctgtgtatgaagagtttgcacgcaatatc
ccaggctttcttcccagtaatgacatttcacagccaactggtttcttggccaagcccatg
cagcaagcttgggcaactgacgatatcgcacagatttatgacaagtgcatcaccgaactg
gagcagcacctacatgcaattccaccaactctggccatgaaccctcagactcaggcactt
cgtaacttactggaggctgtggtaatggccaggaactcccgtgacgctattgctgctcta
ggcctcttgcagaaagctgtagagggactgctggatgccacaagtggtgcagacccagac
ctcctgcttcgttatcgtgaatgccatttgttggttttgaaagccctgcaggacggtcgt
gcttatggctcacagtggtgtaacaataaaatcaccaggtgcctgattgagtgtcgtgac
gaatacaaatacaatgtggatgctgtggaattgctcattagacaccatctggtcaacatg
cagcagtatgacatccatttagcccagtcaatggaaaatggcttgaactatatggcagta
gcctttgccatgcagttggttaagtttctgttggtcgatgagaggagcattagtcatgta
actgaagccgacctgttcaataccattgaaacacttatgaggatcagtgctcattccaga
gggaatgcacctgaaggattgccacagcttatggatttgcttcgagctaactacgaagct
atgatggatcgcgcgcacggtggccccaactttatgatgcactctgggatatcccaggcc
tctgaatacgatgacccaccaggtcttcgagaaaaagctgagtatctgctgagagagtgg
gtaaacctctatcactctgcagcagctggacgggacagcaccaaagcgttctctgccttt
gttgggcagatgcaccaacagggaatcctcaagaccgatgacctgattactcgttttttc
cgactatgtactgaaatgtgtgttgaaatcagttaccgtgcacaacaggagcagcagcac
aatcctacagccaatcccacgatgatcagggccaagtgctatcacaacctggatgcgttt
gtcaggctaatagccctgctggtcaagcattctggagaggccaccaacacagtcacaaaa
attaaccttctcaacaaggtactggggattgttgttggagtactactacaagatcacgaa
gtacgtcagagtgaatttcagcagctgccatatcatcgaatcttcatcatgttgttgcta
gagctaaatgcccctgagcatgtgctggaaacgatcaacttccagacactgactgctttc
tgcaacacatttcacatcttgcggcctactaaagctcctggctttgtctatgcttggctg
gaactaatttcccaccggatcttcattgcgagaatgctggcgcatacaccccaacagaag
ggctggcccatgtatgcccagctgttgatcgatctgtttaagttcctggctccttacttg
aggaatgtggagttgacaaaacctatgcaaattctttacaagggtacactgcgtgtcttg
cttgtccttttgcatgactttccagagttcctttgtgactaccattatggcttctgcgat
gtgatcccgccaaactgtattcagctgcgaaacctgatcctgagtgccttcccacggaat
atgcgactgccagatccattcacaccgaatctaaaggtggatatgctgagtgaaatcaac
attgctcctcggatattgaccaacttcacaggagtgatgccacctcagtttaagaaggac
ttggattcctatttgaagacgcggtcaccggtcacctttctctcagagttgcgcagtaac
ctgcaggtgagcaggacaagggtatcaaatgaacctggtaatcggtataacatccagcta
ataaatgccctggtgttgtatgtggggacgcaggcgattgctcacatccataacaagggc
agcacaccatccatgagcacgatcacacactctgcccacatggacatcttccagaacctg
gctgttgaccttgacacagaaggtcggtacttgttcctgaatgcgattgccaatcaattg
cgttacccaaacagccacactcactatttcagctgcactatgctgtatctgtttgctgaa
gccaacacagaagctatccaggagcagatcaccagggtgctgttggagaggctgattgta
aacaggcctcacccatgggggctcctcatcaccttcattgagctgattaaaaaccccgcc
ttcaaattctggaaccacgagtttgtccactgtgcccctgagattgaaaagttgttccag
tctgtagctcagtgctgtatgggacagaaacaggcacaacaagtaatggaaggcactggc
gccagttaa
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integrated database retrieval system
