KEGG   Chiloscyllium punctatum (brownbanded bambooshark): 140463149
Entry
140463149         CDS       T11285                                 
Symbol
cstf1
Name
(RefSeq) cleavage stimulation factor subunit 1 isoform X1
  KO
K14406  cleavage stimulation factor subunit 1
Organism
cpun  Chiloscyllium punctatum (brownbanded bambooshark)
Pathway
cpun03015  mRNA surveillance pathway
Brite
KEGG Orthology (KO) [BR:cpun00001]
 09120 Genetic Information Processing
  09122 Translation
   03015 mRNA surveillance pathway
    140463149 (cstf1)
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03019 Messenger RNA biogenesis [BR:cpun03019]
    140463149 (cstf1)
Messenger RNA biogenesis [BR:cpun03019]
 Eukaryotic type
  mRNA processing factors
   3' end processing
    Cleavage stimulation factor (CSTF) complex
     140463149 (cstf1)
SSDB
Motif
Pfam: Beta-prop_WDR5 WD40 Beta-prop_THOC3 Beta-prop_WDR3_1st WD40_Prp19 WD40_CDC20-Fz Beta-prop_EML_2 WDR55 WD40_WDHD1_1st Beta-prop_WDR3_2nd Beta-prop_TEP1_2nd WD40_Gbeta CSTF1_dimer Beta-prop_CAF1B_HIR1 EIF3I Beta-prop_EML Beta-prop_WDR36-Utp21_1st Beta-prop_WDR36-Utp21_2nd Beta-prop_WDR90_POC16_2nd ANAPC4_WD40 WD40_MABP1-WDR62_2nd Beta-prop_WDR75_1st Beta-prop_RIG_2nd Beta-prop_EIPR1 NBCH_WD40 Beta-prop_TEP1_C Beta-prop_Aladin WDR90_beta-prop_4th Beta-prop_VPS8 Beta-prop_DCAF4 WD40_RFWD3 Beta-prop_SCAP Beta-prop_IFT140_1st Beta-prop_NUP159_NUP214 Ge1_WD40 Beta-prop_HPS5 Beta-prop_DCAF12 Cytochrom_D1 DUF7099 Beta-prop_SPT8 Beta-prop_WDR75_2nd Beta-prop_NWD2_C eIF2A Frtz Beta-prop_WDR11_1st VPS8_N
Other DBs
NCBI-GeneID: 140463149
NCBI-ProteinID: XP_072413011
LinkDB
Position
37:59637786..59667496
AA seq 437 aa
MFRPKVTLKDRQHLYRLIIGQLLYDGYMNIASNLINEIKPPSVCSPSEQLLHLAKLEWLL
LTGMENDDNTVQYAIGRSDTVAPGTGIDMEFDADVQTMSPEAAEYETCYVTSHKGPCRVA
TYSRDGQLIATGSADASIKILDTERMLAKSAMPIEVMMNETAQQNMENHPVIRTLYDHVD
EVTCLAFHPTEQILASGSKDYTLKLFDYSKPSAKRAFKYLQEAEMLRSISFHPSGDYILV
GTQHPTLRLYDVNTFQCFVSSNPRDQHTDAVCAVSYNPSANMYVTCSKDGNIKLWDGVSN
RCITTYEKAHDGAEVCSIMFSRNSKYVLSSGKDSIVKLWEISTGRTMVKYTGAGLSGRQT
HRTQAVFNHTEDYVLLPDERTISLCCWDSRTAERKNLLSLGHNNIVRCIVHSPTNPGFMT
CSDDYRARFWYRRSSTD
NT seq 1314 nt   +upstreamnt  +downstreamnt
atgtttcgacctaaagttactctaaaagatcggcaacacctttaccgactcattattggc
cagctgctatatgatggatacatgaatattgcatcaaacctgatcaatgagatcaagcca
ccctccgtttgctctccctctgagcaactattgcatctcgcaaagcttgaatggttgtta
cttacagggatggaaaatgacgacaacactgtacagtatgctattggaaggtcagacact
gtggctcctggtacaggtattgacatggaatttgatgctgatgttcagactatgtcccca
gaggctgctgagtacgagacatgctacgtgacatcacataaagggccatgccgtgttgcc
acctatagccgagatggacagctgattgctacaggctctgctgatgcatctatcaagatt
ctggatacagagaggatgttagcaaagagtgccatgcccattgaggtaatgatgaatgag
acagctcaacagaatatggaaaaccatcctgtaattcgcaccctgtatgatcatgtagat
gaggtcacctgccttgctttccatcctacagaacagatactggcatcagggtcaaaggat
tacacactgaaactttttgactattccaagccttctgccaaaagagcattcaagtatctt
caggaagcagaaatgctccgctccatctcctttcatccttccggagactacattctagtg
ggaacacagcaccccactctgcgattgtatgacgtcaataccttccagtgttttgtgtca
agcaatccccgtgatcagcacacagatgctgtctgtgctgtaagctataatcccagtgcc
aacatgtacgtgacatgcagtaaagatggcaacatcaagctgtgggatggagtatcaaat
cgctgcatcacaacctatgaaaaagcacatgatggtgcagaggtgtgctcgattatgttc
tcacgaaattcgaagtatgttttgtcaagcggaaaggattctattgtgaaactgtgggaa
atatcaactggccgcacaatggttaaatacacaggagcagggttgagtggcagacagacg
catcgcacccaggctgtctttaaccatactgaagattatgtgcttctccccgatgaaaga
acaataagtctttgctgctgggactcacgtacagctgaacgcaagaacctcctgtctctt
ggacacaacaatattgttcgttgtattgtgcactctcctaccaatcctggtttcatgacc
tgcagtgatgactacagggccaggttttggtatagaagatccagcactgattga

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