Coccidioides posadasii: 9692580
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Entry
9692580 CDS
T01332
Symbol
CLP1, D8B26_007545
Name
(RefSeq) Cleavage polyadenylation factor subunit clp1
KO
K14399
polyribonucleotide 5'-hydroxyl-kinase [EC:
2.7.1.78
]
Organism
cpw
Coccidioides posadasii
Pathway
cpw03015
mRNA surveillance pathway
Brite
KEGG Orthology (KO) [BR:
cpw00001
]
09120 Genetic Information Processing
09122 Translation
03015 mRNA surveillance pathway
9692580 (CLP1)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
cpw03019
]
9692580 (CLP1)
Enzymes [BR:
cpw01000
]
2. Transferases
2.7 Transferring phosphorus-containing groups
2.7.1 Phosphotransferases with an alcohol group as acceptor
2.7.1.78 polynucleotide 5'-hydroxyl-kinase
9692580 (CLP1)
Messenger RNA biogenesis [BR:
cpw03019
]
Eukaryotic type
mRNA processing factors
3' end processing
Pre-mRNA cleavage factor IIm (CFIIm)
9692580 (CLP1)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
CLP1_N
CLP1_P
Clp1
ATP_bind_1
AAA_24
nSTAND3
ABC_tran
Motif
Other DBs
NCBI-GeneID:
9692580
NCBI-ProteinID:
XP_003067109
UniProt:
E9D291
C5PD03
LinkDB
All DBs
Position
4:join(2175898..2176035,2176214..2176961,2177029..2177831)
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AA seq
562 aa
AA seq
DB search
MSLPGLELSQQPIEARRPPPQPTQISLPKGSEWRFEVAFGNTTRVKLLAGTAELFGTELA
TSQTYTFSGTKAAIYTWHGCTLEVGAGDPVPIGPVGSAPVPPGPGNGGCQVEYIAEETPM
AEYANVHFALETMRHDAKAAGRDGPRVLILGPEDAGKTSLAKILTGYATKMGRQPLVVNL
DPSEGMLSVPGALTATAFRSMIDVEEGWGSSPMSGPSPIPVKLPLVYFYGLPACLDGDGS
YYKAIVSRLALAVTGRMAEDSDAREAGVIIDTPGIIGQGKGASEDVIHHIVTEFSISTIL
IIGSERLYSTMVKNYDNKPIATSATAAASDERISVVKLTKSGGCVDRDATFMKYVRESQI
RSYFFGSPVPSTASSALSLSSTTTGTTMTLSPHTSQVDFNSLSIYSITIATEGEEDEYDP
SKFDSFLPGGHEENDHNTSLTGTTSLQPPSGLLPGLRSELPSATTGLPSASTSSTTPFTN
LPSPAPMSLANTLLAITNAAPNASLDEVRDASIMGFIYIADVDEKKGQGGKLRLLAPVGG
RVPNRAMIWGRKWPGEVVGLIG
NT seq
1689 nt
NT seq
+upstream
nt +downstream
nt
atgtctctccccggtttagagctttcacaacagcccatcgaagcccgaagacctcccccg
caaccgacgcagatcagtcttcccaagggatcggaatggagatttgaagtcgctttcggg
aatacaacccgggtgaagttactcgccggcactgcagaattgttcggcactgaacttgct
acgtcgcaaacctacactttctctggaacgaaagccgcgatatacacatggcacggatgt
acgctggaagtcggggcgggtgatcccgttcccattgggcctgtgggaagtgcgcctgta
cctcctggccccgggaacgggggatgtcaggtcgaatacatcgccgaagagacgcccatg
gccgaatatgcgaatgtgcacttcgcgctggagacgatgaggcatgatgccaaagccgcc
gggagagatgggccacgggtgctcatcctcggaccggaagatgcggggaagacgagtcta
gcgaagatattgaccggatatgcgacgaagatggggagacagcccttggttgtgaatttg
gatccgtcggagggcatgctgagtgttcccggggcgttgacggcaacggcgtttcggtct
atgatcgatgtggaagaagggtgggggagtagtccgatgtctggccctagtccgataccc
gtgaagctgccgctggtgtatttttatgggttaccggcctgcttggatggggatgggagt
tactataaggcgattgtatccaggttggcactggctgtgacgggcaggatggcagaggat
tcggatgcgagggaagctggtgtcattattgacacgcccggcatcattggccaaggaaaa
ggtgcttctgaagacgttatacatcatattgtgaccgaattctcaatatccaccatcctt
atcatcggttcagagcgcctttacagcaccatggtcaaaaactacgataacaaaccaatc
gccacgtcagcgacagcagctgcttctgatgagcgaatctcagtggtgaaactcaccaaa
tcgggcggttgcgtcgaccgtgatgcgacattcatgaaatatgttcgcgaatctcaaata
cggtcgtacttctttggaagtcctgtaccatcaactgcatcctcagcgctctcgctctcc
tccacaaccacaggcaccacgatgacactttctccacacacctcgcaggtcgactttaac
agcttatctatatacagcatcaccatcgccacagaaggtgaagaagatgaatacgaccca
tcaaaattcgattcattcctgcccggcggacatgaagaaaacgatcataatacctctctc
acgggcacaacctctcttcaacccccatctggccttctcccaggcctccgatccgaactc
ccaagtgccaccacaggtctcccatccgcttctacaagttccactactccgtttacaaat
cttccttccccagcaccaatgtccctagcgaatacgttgttagcaatcaccaatgctgct
cccaacgcatcattggacgaggtccgcgatgcgagtattatgggtttcatatacattgca
gatgtcgacgagaagaaaggccaaggtggtaagttaaggctgctagcgccagtcggtggc
agggtgccgaatagggcgatgatctgggggagaaaatggcctggtgaggtggtaggactg
atcggatag
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