Chenopodium quinoa (quinoa): 110713911
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Entry
110713911 CDS
T05764
Name
(RefSeq) CCR4-NOT transcription complex subunit 1-like isoform X1
KO
K12604
CCR4-NOT transcription complex subunit 1
Organism
cqi
Chenopodium quinoa (quinoa)
Pathway
cqi03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
cqi00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
110713911
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
cqi03019
]
110713911
Messenger RNA biogenesis [BR:
cqi03019
]
Eukaryotic type
mRNA surveillance and transport factors
mRNA cycle factors
P-body specific factors
110713911
mRNA degradation factors
3'-5' decay
Ccr4-NOT complex
110713911
BRITE hierarchy
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
Not1
CNOT1_CAF1_bind
CNOT1_TTP_bind
DUF3819
ARM_Cnot1
CNOT1_HEAT
NOT1_connector
Motif
Other DBs
NCBI-GeneID:
110713911
NCBI-ProteinID:
XP_021748044
LinkDB
All DBs
Position
Unknown
AA seq
2386 aa
AA seq
DB search
MQEFSATVASHVRFLLQSLNGSNSDSVLQELCQFTEQGLEGSLLILQSLLEFMNVHGTDA
KKVHLHPVISSVFRFILDKPNFSTVLCQSLRMFTIRDGFLDDLSNALGLSLSEKIAIGLA
FSESENPDARLIGTNFCMTQIEGLFANPSTIESTEKIQNIFMFLHRCEGLSKHVDTFTQM
LSLMQLKEGVPFILAPLVPDDLNDTKFLSDCRSMDLFYDSNVDDFDTIVAEMEKEISMAD
VMKELGYGCTISASKCKEILSLFMPLTEASIARILGIVVRSYAGLEDNTTTFSSFLSAIG
SNPLSDLPYLSSWDVNILVETIKQLAPETNWAGVMENLDHEGFYIPNENAFTFFMTIYKH
ACQDSFPLHAICGSVWKNSEGQLSFLKYAVSAPPEVFTFAHSIRQLVYVDSVHGLQSQPG
QSNYAWLCLDLVDVLCQLAERGHAATIQAMLEYPLKNCPEVLLLGVAQIHTTYNLLQHEV
ASTVLPMIIANAGRKGVILHLWHINHYLVLRGFVHVLASESDGIHRILDVCQETKILSQV
LERIPFSFAIKLAVVASQKELLDLEKWLNDNLMRSKDTFFKECFKYIKEVQSQTISEENA
DKLHETVLSANPGSRSALVILKVLQANAHIVTSKSLCDEIEKMHASLMNGSLAPQNEGVA
DSPSSNTPSDIDAEANSYFQHMFSEKISVADMVIMLTRFKESSDKRELSIFECMIANLFE
EYRFFPKYPERQLGIAAELFGSIIKHQLVTHLTLGIALRCVLDALRKPADSKMFTFGTKA
LDQFLNRLDEWPQYCNHILQISHLRGTNQDLVVFIEAILSRQSHGGNGPVDQLNITSLGT
TGNEITGLTTTQLGQPLSSPPPIQPRPPVQLDDGNKASLSMNSFTKPLVAASAQSTATTL
ADAVSIPKIPSPLTTPGMLSSSQGYARTRGVTNARFGSALNIETLLAASERRETPIEAPS
SEAQDKISFIFNNISASTMDAKAKEFSEILKEECYPWFAQYMVMKRASIEPNFHEMYLKF
LDKINSKALYKEIVQETYENCKVLLGSELIKSSSEERSLLKNLGSWLGKLTIGRNQVLRA
RDIDPKSLIIEAYEKGLMIAVIPFTSKILEPCQSSLAYQPPNPWTMGILALLAEIYAMPN
LKMNLKFDIEVLFKNLGVQIKEVTPTSLLRDRVRVVEGNPDFSNKEFVAPQQPISSEDQV
AIPEPMEPPPKPQLPVPISPYVPAEDDKGGSMGFSDQLPSAQGLLQSTGSQSQYSMTQLP
PSIPSLGAHVVVNSKLNNMGLHVHFQRVLPLAMDRAIKEIVPGIVQRSVSIATQTTKELV
IKDYALESDESRIYNAAHLMVASLSGSLAHVTCKEPLRGSITSQLRNMLQGVNVGSEVLE
QYVQLVTNDNLDLGCAMIEQAAQEKAVQTIDAEISQQLSLRRKHRESLGSSIYDANIYAQ
GAMGILPETLRPTPGRLSVSQQRVYEDFVRLPWQNQQSSQSANATLAAHPPSPSPAGGSF
PRTFSASSGQLSSNIYSGLGNTSFGVGAQPIDLVSDEMEPSSQILSTAAPSQIRTESVGS
QRPENDSTPVSSSGVSAVEPLPIESAASMKEPGVSSQSQPQGSVPIGTGLLEPSLTIGDV
LDKYQLVALKLETALASDGREAEIQPIVSEIPQIILRCGNRDEAALAVAQKVFKSLYENS
GNGLHIAAHLAILAAIRDVCKLVVKELSSWLIYSDEERKFNKDITVGLIRRELLNLAEYN
IHMAKLLDAGRNKIATEFAVSLLQTLVKEEPKVISELQNLVENLAKQLAARPGSPELLQQ
LVETVKNPAANVGGLTSPSTGKDDKNRQTRDQKVSQSVASKGEYNSVEVMEPDASSFQKQ
VSLLFAEWYRLSELPSGTDTPCIRFVIQLHQNGLLRGDDITERFFRVLLEISVSHFGEVM
QSSQQVQSSFLAIDIYAKLVYSILKHCPVDQGSSKLFLLPKILAVTVRSIQKDADEKKED
FNPRPYYRLFINWLLDFGSLDPVHDGINFQVLSAFANAFHALQPLKVPAFSFAWLELVSH
RTFMPKLLAGNSQKGWPFLHRLLVDLFQFMEPFLRNAEMGELIRFLYQGTLRVLLVLLHD
FPEFLCDFHFSFCDVIPPSCIQMRNIILSAFPRNMRLPDPSTPNLKIDLLDEMSLAPRIL
SEVDAALKAKQMKADVDEFLRTRQQSSPFLSDLKQRLLLPPSEASHAGTCYNVPLINSLV
LYVGMQAIQLLQARNRSQPQSVSSDPLAAKAALDIFQTLIRDLDTEGRYLFLNAIANQLR
YPNTHTHYFSVILLYLFSDAHQEIIQEQITRVLLERLIVNRPHPWGLLITFIELIKNPDY
NFWNRTFTRCAPEIENLFETVSTSCGGPKPGSESMVGSGGLSDSAH
NT seq
7161 nt
NT seq
+upstream
nt +downstream
nt
atgcaggaattttcggccacggttgccagccatgtccgattccttctgcaaagcttgaat
ggatccaactctgattctgtgcttcaagagctttgtcagttcaccgaacaaggcttagaa
ggaagcttattgattctgcagagcttgttagaatttatgaatgtacatgggacagatgca
aagaaagttcatctgcacccagttatttcctcagtttttagatttattttggataaacca
aatttcagtactgttctctgtcagtctcttcgaatgtttacaatcagagatggattcctc
gatgatttgtcaaatgctttaggtctctcactttctgaaaaaatcgccattggtcttgca
ttctcggagtccgaaaatcctgatgccagattgattgggacaaatttctgcatgactcag
attgagggattgtttgccaatcccagcaccattgaatcaactgaaaagattcagaatatt
ttcatgttccttcatcgatgtgagggcctctcaaagcatgtagatacttttacgcagatg
ttgagcctaatgcagctgaaagagggtgtaccctttattttggctcccctggtcccagat
gacctgaacgataccaagttcctcagtgactgcaggagcatggatttgttctatgattct
aatgtagatgactttgatacaattgttgctgaaatggagaaggagattagtatggcagat
gtcatgaaagaactaggttatggatgcacgatcagtgcctcaaaatgcaaggaaatattg
tctctttttatgcccctaactgaagcaagcatcgctaggatactgggcatcgttgtccgt
tcttatgctggtcttgaggataacacaactacattttcatcattcctatcggcaattggc
agtaatcctttgtctgatctcccatatctcagttcctgggatgtcaatatccttgtcgag
acaattaaacagcttgcacctgaaaccaactgggctggtgttatggagaatctagaccat
gaaggattctatattcctaatgagaatgccttcacatttttcatgaccatttacaagcat
gcttgtcaggattctttccctctccatgctatttgcgggtcagtttggaagaattcggag
gggcaactttcttttcttaagtatgcagtatctgcgccacctgaagtatttacctttgca
cattctattcggcaactggtgtatgttgattcagtccacggtctacaatctcaacctgga
cagtccaattatgcgtggttgtgtcttgatcttgtggatgtattgtgccaattggctgag
aggggtcatgctgctacaattcaagcaatgcttgaataccctctgaaaaactgccctgaa
gtactacttcttggggtagcacaaatccatacaacttataaccttcttcagcatgaagtt
gcttctactgttttaccgatgataattgctaatgctggcagaaaaggagttatccttcac
ctctggcacatcaaccattatttggttttgcgtggatttgttcatgttctagctagtgaa
tcagacggcattcacaggattttagatgtttgccaggaaaccaagattctcagccaagtc
ttggagcggattccgttttcttttgctatcaaacttgcggtagttgcttctcaaaaagag
cttttggatcttgagaaatggttgaatgataacttaatgagaagtaaagacacttttttt
aaggagtgcttcaagtatattaaagaggttcagagccaaacaatatctgaagagaatgct
gacaagctgcatgaaactgttttgtctgctaaccctggctcccgtagtgctctggttatc
ctgaaggtccttcaagccaatgcccacatagtgacctccaaaagtctgtgtgatgaaatt
gaaaaaatgcatgcatctctgatgaatggcagtttggctccacagaatgaaggagttgct
gattcaccctcctcaaatacgccttctgacattgacgcagaggcaaattcctatttccag
cacatgttttctgaaaagatatctgttgctgatatggtcataatgcttacacgtttcaaa
gaatcctctgacaaaagggaactgtctattttcgaatgcatgattgccaatctgtttgaa
gagtatagatttttcccaaaataccccgagagacagcttggaattgctgctgaattattt
ggctctatcatcaagcatcagctagtaacacatctgacacttggtattgcactccgttgt
gttttggatgctttacgaaaacccgcagattcaaagatgtttacatttggtacaaaagca
ttggatcagtttctcaatcgtttggatgagtggccccaatattgcaatcatatcttgcag
atatcccatcttcgtggtactaatcaagacctagttgtatttattgaagcaattctttcc
cggcaatctcatggtggaaatggtcctgttgaccaacttaatattacttctctgggaacg
acaggcaacgagattactggattgactactacacagctggggcagccactttcctctcct
ccacccatccaacctaggcccccagtgcagttagatgatggaaataaagcttccttaagt
atgaatagcttcacaaagccattagtagctgcttcagctcaatctactgcaacgacttta
gcggatgcagtaagcattccaaagattccgagtccactgactacacctggaatgctgtca
tcctctcaaggctatgctcgtacccgaggagttactaatgccaggtttggttcggcatta
aatatagagaccctccttgctgcttcagaacgaagagaaacaccaatagaggctccatca
tctgaggctcaggacaaaatttcattcattttcaacaatatctctgcttctactatggat
gcgaaggccaaagaattttcagaaattctgaaggaggaatgctatccctggtttgcacaa
tatatggttatgaaaagagctagcattgaaccgaactttcatgaaatgtatctgaagttt
ctggacaagattaattcaaaagctctgtataaggaaattgttcaggaaacatatgagaat
tgcaaggttcttttaggctctgagcttataaaatcaagttctgaagagcgctctttgcta
aaaaatttgggaagctggcttgggaaacttacaattggtcgaaatcaagttcttagggct
cgtgatattgatcctaaatctttgattatagaggcgtatgagaaaggattaatgattgct
gtgattccttttacgtctaagattttggaaccatgtcaaagcagtctggcttatcaacct
ccaaatccttggacaatgggtattcttgccttgcttgctgagatctatgcgatgccaaac
ctaaagatgaatcttaaatttgacattgaggtgctgtttaaaaatcttggtgttcagatt
aaagaagtgacccctacttctcttttaagagatcgtgtgcgagtagttgaaggaaatcct
gatttttcaaacaaagagtttgtagcaccacaacaaccaatatcttctgaagatcaagtg
gcaataccagagcccatggaaccgcctcctaaacctcagcttccagttccaatttctccg
tatgttcctgctgaggatgataagggtggtagtatgggattttctgaccagcttccttca
gctcaaggattgctccaatctactggctctcaatctcaatatagcatgactcagttaccc
ccttcaattcctagccttggagcacatgtcgtcgtgaattcaaagctgaataatatgggc
ttacatgtgcactttcagagagttcttccacttgctatggatagagctatcaaagaaatt
gtgcctggtatagtgcagcgtagtgtttccattgctactcaaactactaaggagcttgtt
attaaggattatgctttggagtcagatgagagtcgcatatataatgctgcgcatctgatg
gttgctagtctttctggaagtctagctcatgtgacttgcaaggaacctctgcgtggctca
ataactagtcagctgcgtaatatgcttcaaggagtaaatgttggaagtgaagttttagaa
cagtatgtgcagctcgtgaccaatgacaacctcgatttgggttgtgcaatgattgaacaa
gcagcacaagagaaggctgtacaaacaattgatgcagaaatctcacaacaactttccttg
agaaggaagcacagagaaagtcttggctcctcaatatatgatgctaatatatacgcacaa
ggtgcaatgggtatcttgccagaaactcttcgtcctacccctgggcgcttgtctgtttcc
cagcaacgtgtttatgaggattttgtgcggcttccctggcagaaccaacagtcgagtcaa
agcgctaatgctacgcttgctgctcatcccccttctccttcccctgctggcggaagcttc
ccgcgcacattcagtgcatcttcaggacagcttagttcaaatatctattctggactcggg
aatactagttttggtgtgggtgctcagcctattgatcttgtttctgatgagatggaacca
tcttcgcagatacttagtactgctgctcctagccagataagaactgaaagtgttggctct
cagcgccctgagaatgattcaaccccagtgtcttcttctggtgtgtcagccgttgaacca
ctaccaattgaatcagctgcaagtatgaaggagcctggagtatcctctcaatcacaacca
caaggatctgtgcctataggaactggtctcttagaaccttcattgactattggagatgtg
ctggacaaataccagttagttgcattgaagttggaaactgcccttgctagtgatggtaga
gaagcagaaattcagcctattgtttcagagattccacagatcatactaagatgtggcaac
cgagatgaagctgctttagctgttgcacaaaaggttttcaaatctttgtatgagaattca
ggcaatggtttgcacattgctgctcatcttgcaattttagctgcaattcgtgatgtgtgc
aaacttgtggtgaaggagcttagtagctggttgatttattcagacgaggaaaggaagttc
aataaggatattaccgttggcctgataagaagggagttgttgaacttggccgaatataat
attcatatggcaaagcttcttgatgcaggaagaaacaaaattgcaactgagtttgctgtt
tctcttctccaaacattggtgaaagaagaacctaaggtcatttcagagcttcagaattta
gttgaaaacctggcaaagcagcttgctgcgaggccggggtcgcctgagttgttgcagcag
ttagttgaaacggtgaaaaatccagcagctaatgttggtggcctgaccagtcctagtaca
gggaaggatgataagaacagacaaactagagaccaaaaggtttctcaatctgtggcaagt
aagggtgagtacaacagtgtagaagtaatggagccagatgcctctagtttccagaagcag
gtttctctattatttgcagaatggtaccggttatctgaacttccttctggaactgatact
ccatgcataagatttgttatacagctacatcaaaatggtttacttagaggagatgacata
acagagcgcttcttccgggttcttttggaaatatctgtgtcacattttggtgaggtgatg
cagtcatctcaacaagtgcagtcttcttttctggcaattgatatatatgctaaattagta
tattcaatcttaaagcattgcccggtggatcagggatcaagcaaactctttctcttacca
aagattttagctgtaactgtaagatcaattcaaaaagatgctgatgaaaagaaagaagac
tttaatccaaggccatattataggctctttattaattggctgttagactttggctcgtta
gaccctgtgcacgatggtattaatttccaggttttgtcagcttttgcgaatgcattccat
gctttgcagccccttaaagtacctgctttcagctttgcttggctagaactagttagtcac
agaactttcatgcctaagttgcttgccggcaactctcagaaggggtggccctttcttcat
cgcttgttggttgacttatttcagttcatggagcctttcttgaggaatgcagaaatggga
gaattgatacgctttctgtaccaaggaactctgagagtgctgttggtgctgctgcatgat
tttccagaattcttgtgcgactttcattttagtttttgtgatgtcatacctcccagctgc
atacagatgcgaaatataatcctcagtgcttttcctcgcaacatgagacttccggatcct
tcaactccaaatttgaagattgatttgctagatgagatgagcctagcacctcgtatattg
tccgaagttgatgcagctttgaaggcaaagcagatgaaagctgacgttgatgagtttctc
aggacaaggcaacaatcatccccatttctgagtgatctgaagcagagattactacttcca
cctagtgaggcttcccatgctgggacctgttacaatgtacctctgatcaattcacttgtg
ttgtatgttggaatgcaggcaattcagctgcttcaggctcggaaccggtcacaacctcag
tcagtcagcagtgatccattggcagctaaagcagcattggatatattccaaactttaata
agggatttggatactgaaggccgctatctatttctaaatgcaattgctaatcagttgcgt
tatccaaatactcacacacattatttctccgtcatccttctctacttattttctgatgcg
caccaggagatcattcaggaacaaattaccagagtactattagaaaggctaattgttaac
aggccacatccgtggggactattgattacatttattgaactaatcaagaatcctgattac
aatttctggaaccgtaccttcactcggtgtgcacctgaaattgaaaatttgttcgagact
gtttcgacctcatgtggggggccaaagcctggtagtgaaagcatggttggctcaggagga
ttatcagatagcgctcattga
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integrated database retrieval system
