Chenopodium quinoa (quinoa): 110721506
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Entry
110721506 CDS
T05764
Name
(RefSeq) CCR4-NOT transcription complex subunit 1-like isoform X1
KO
K12604
CCR4-NOT transcription complex subunit 1
Organism
cqi
Chenopodium quinoa (quinoa)
Pathway
cqi03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
cqi00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
110721506
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
cqi03019
]
110721506
Messenger RNA biogenesis [BR:
cqi03019
]
Eukaryotic type
mRNA surveillance and transport factors
mRNA cycle factors
P-body specific factors
110721506
mRNA degradation factors
3'-5' decay
Ccr4-NOT complex
110721506
BRITE hierarchy
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
Not1
CNOT1_CAF1_bind
CNOT1_TTP_bind
ARM_Cnot1
DUF3819
CNOT1_HEAT
NOT1_connector
Motif
Other DBs
NCBI-GeneID:
110721506
NCBI-ProteinID:
XP_021756362
LinkDB
All DBs
Position
Unknown
AA seq
2387 aa
AA seq
DB search
MQEFSATVASHVRFLLQSLNGSNSDSVLQELCQFTEQGLEGSLLILQSLLEFMNIHGTDA
KKVHLHPVISSVFRFILDKPNFSTVLCQSLRKFTIRDGFLDDLSNALGLSLSEKIAIGLA
FSESENPDARLIGTNFCMTQIEGLFANPSTIESTEKIQNIFMFLHRCEGLSKHVDTFTQM
LSLMPLKEGVPLILAPLVPDDLNDTKFLSDCRSMDLFYDSNVDDFDTIVAEMEKEISMAD
VMKELGYGCTMSASKCKEILSLFMPLTEASIARILGIVVRSHAGLEDNTTTFSSFLSAIG
SNPLSDLPYLSSWDVNILVKTIKQLAPETNWAGVMENLDHEGFYIPNENAFTFFMTIYKH
ACQDSFPLHAICGSVWKNSEGQLSFLKYAVSAPPELFTFAHSIRQLVYVDSVHGLQSQPG
QSNYAWLCLDLVDVLCQLAERGHAATIQSMLEYPLKHCPEVLLLGVAQIHTSYNLLQHEV
ASTVLPMIIANAGRKGVILDLWHINHYLVLRGFVDVLASESDSIHRILDVCQETKILSQV
LERIPFSFAIKLAAVASQKELLDLERWLNDMLMTSKDTFFTECFKYIKEVQSQTISEENA
DKLHETVSSANPGSRSALVILKVLQAKAHVVTSKSLCDEIEKMHVSLMNGSLAPQNEGVA
DSPSSNMPSDIDAEANSYFQHMFSEQITVGDMVLMLTRFKESPDKRELSIFECMIANLFE
EYRFFPKYPERQLGIAAVLFGSIIKHQLVTHLTLGIALRCVLDALRKPADSKMFTFGTKA
LEQFVNRLDEWPQYCNHILQISHLRGTHQDLVVFIEGILARQSHGGNGPVDQLNITSLGT
TGNEITGLTTTQLGQPLSSPSPIQPRPPVQVDDGNKASLSMNSFTKPLVAASAQSTATTL
ADAVSIPKIPSPLTTPGMLSSSQGYARTRGVTNARFGSALNIETLLAASERRETPIEAPS
SEAQDKISFIFNNISASTMDAKAKEFSEILKEECYPWFAQYMVMKRASIEPNFHEMYLKF
LDKINSKALYKEIVQETYENCKVLLGSELIKSSSEERSLLKNLGSWLGKLTIGRNQVLRA
RDIDPKSLIIEAYEKGLMIAVIPFTSKILEPCQSSLAYQPPNPWTMGILALLTEIYAMPN
LKMNLKFDIEVLFKNLGVQIKEVNPTSLLRDRVRVVEGNPDFSNKEFVAPQQPISSEDQV
AIPEPMEPPPKPQLPVPISPYVPAEDDKGGSMGFSDQLPSAQGLLQSAGSQSQYSMTQLP
PSIPSLGAHVVVNSKLNNMGLHVHFQRVLPLAMDRAIKEIVPGIVQRSVSIATQTTKELV
IKDYALESDESRIYNAAHLMVASLSGSLAHVTCKEPLRGSITSQLRNMLQGVNVGSEVLE
QYVQLVTNDNLDLGCAMIEQAAQEKAVQTIDAEISQQLSLRRKHRESLGSSIYDANIYAQ
GAMGILPETLRPTPGRLSFSQQRVYEDFVRLPWQNQQSSQSVNGTLAAHSPSPSPAGGSF
PRTFSASSGQLSSNIYSGLGNTSFGVGAQPIDLVSDEMEPSSQILSTAALSQIRTSESVG
SQRSENDSTPVSSSGVSAMEALPVESAASMKDPGVTSQSPPQGSVPIGTGLLEPSLTIGD
VLDKYQLVALKLETALSSDGREAEIQPIVSEIPQIILKCGNRDEAALAVAQKVFKSLYEN
SGNGLHIAAHLAILAAIRDVCKLVVKELTSWLIYSDEERKFNKDITVGLIRRELLNLAEY
NIHMAKLLDAGRNKIATEFAVSLLQTLVKEEPKVISELQNLVENLAKQLAARPGSPELLQ
QLVETVKNPAATVGGLTSPSTGKDDKNRQTRDQKVSQSVASKGEYNSVEVMEPDASSFQK
QVSLLFAEWYRLSELPSGTDTPCIRFVIQLHQNGLLRGDDITERFFRVLLEISVSHFGEV
MQSSQQVQSSFLAIDIYAKLVYSILKHCPVDQGSSKLFLLPKILAVTVRSIQKDADEKKE
DFNPRPYYRLFINWLLDFGSLDPVHDGVNFQVLSAFANAFHALQPLKVPAFSFAWLELVS
HRTFMPKLLTGNSQKGWPFLHRLLVDLFQFMEPFLRNAEMGELIRFLYQGTLRVLLVLLH
DFPEFLCDFHFSFCDVIPPSCIQMRNIILSAFPRNMRLPDPSTPNLKIDLLDEMSQAPRI
LSEVDAALKAKQMKADVDEFLRTRQQSSPFLSDLKQRLLLPPSEASHAGTCYNVPLINSL
VLYVGMQAIQLLQARNRSQPQSVSSDPLAAKAALDIFQTLIRDLDTECRYLFLNAIANQL
RYPNTHTHYFSVILLYLFSDAHQEIIQEQITRVLLERLIVNRPHPWGLLITFIELIKNPD
YNFWNRTFTRCAPEIEKLFESVSTSCGGPKPVNESMVGSGGLSDNAH
NT seq
7164 nt
NT seq
+upstream
nt +downstream
nt
atgcaggaattttcggccacggttgccagccatgtccgattccttctgcaaagcttgaat
ggatccaactctgattctgtgcttcaagagctttgtcagttcactgaacaaggcttagaa
ggaagcttattgatcctgcagagcttgttggaatttatgaatatacatgggacagatgca
aagaaagttcatctgcacccagttatttcctcagtttttagatttattttggataaacca
aatttcagtactgttctctgtcagtctcttcgaaagttcacaatcagagatggattcctc
gatgatttatcaaatgctttaggtctctcactttctgaaaaaatcgccattggtctcgca
ttctcggagtctgaaaatcctgatgctagattgattgggacaaatttctgcatgactcag
attgagggattgtttgccaatcccagcacaattgaatcaactgaaaaaatccagaatatt
ttcatgttccttcatcgatgtgagggcctctcaaagcatgtagatacttttacgcagatg
ttgagcttaatgcctctgaaagagggtgtaccattgattttggctcccctggtcccagat
gacctgaacgataccaagttcctcagtgactgcaggagcatggatttattctatgattct
aatgtagatgactttgataccattgttgctgaaatggagaaggagattagtatggcagat
gtcatgaaagaactaggttatggatgcacgatgagtgcctcaaaatgcaaggaaatattg
tctctttttatgcccctaactgaagcaagcattgctaggatactgggcatcgttgtccgt
tctcatgctggtcttgaggataacacaactacattctcatcattcctatcggcaattggc
agcaatcctttgtctgatctcccatatctcagttcctgggatgtcaatatccttgtcaag
acaattaaacagcttgcacctgaaaccaactgggcaggtgttatggagaatctagaccat
gaaggattctatattcctaatgagaacgccttcacatttttcatgaccatttacaagcat
gcctgtcaggattctttccctctccatgctatttgcgggtcagtttggaagaattcggag
gggcaactttcctttcttaagtatgcagtttctgcgccacctgagttatttacctttgca
cattctattaggcaactggtgtatgttgattcagtccacggtctacaatctcaacctgga
cagtccaattatgcatggttgtgtcttgatcttgtggatgtattgtgccaattggctgag
aggggtcatgctgctacaattcaatcaatgcttgaatacccactgaaacactgccctgaa
gtactacttcttggggtagcacaaatccatacatcttataaccttcttcagcatgaagtt
gcttctactgttttaccgatgataattgctaatgctggcagaaaaggagttatccttgac
ctctggcacatcaaccattatttggttttacgtggatttgttgatgttctagctagtgaa
tcagacagcattcacaggattttagatgtttgccaggaaaccaagattctcagccaagtc
ttggagcggattcctttttcttttgctatcaaacttgcggcagttgcttctcaaaaagag
cttttggatcttgagagatggttgaatgatatgttaatgacaagcaaagacacttttttt
acggagtgcttcaagtatattaaagaggttcagagccaaacaatatctgaagagaatgct
gacaagctgcatgaaactgtttcgtctgctaaccctggctcccggagtgctctggtcatc
ctgaaggtccttcaagccaaggcccacgtagtgacctccaaaagtctgtgtgatgaaatt
gaaaaaatgcatgtatctctgatgaatggcagtttggctccacagaatgaaggagttgct
gattcaccctcctcaaatatgccttctgacattgatgcagaggcaaattcctatttccag
cacatgttttctgaacagattactgttggtgatatggtcctaatgcttacacgtttcaaa
gaatcccctgacaaaagggaactgtctattttcgaatgcatgattgccaatctgtttgaa
gagtatagatttttcccaaaataccccgagagacagcttggaattgctgctgtattattt
ggctctatcatcaagcatcagctagtaacacatctgacacttggtattgcactccgttgt
gttttggatgctttacggaagcctgcagattcaaagatgtttacgtttggtacaaaagcg
ttggagcagtttgtcaatcgtttggatgagtggccccaatattgcaatcatatcttgcag
atatcccatcttcgtggtactcatcaagacctagttgtatttattgaaggaattcttgcc
cggcaatctcatggtggaaatggtcctgttgaccaacttaatattacttctctgggaacg
acaggcaacgagattactggattgactactacacagctggggcagccactttcctctcct
tcacccatccaacctaggcccccagtgcaggtagatgatggaaataaagcttccttaagt
atgaatagcttcacaaagccattagtagctgcttcagctcaatctactgcaacgacttta
gctgatgcagttagcattccaaagattccgagtccactgactacacctggaatgctgtca
tcctctcaaggctatgctcgtacccgaggagttactaatgccaggtttggttctgcattg
aatatagagaccctccttgctgcttcagaacgaagagaaacaccaatagaggctccatca
tctgaggctcaggacaaaatttcattcattttcaacaatatctctgcttctactatggat
gcgaaggccaaagaattttcagaaattctgaaggaggaatgctatccctggtttgcacaa
tatatggtgatgaaaagagctagcattgaaccgaactttcatgaaatgtatctgaagttt
ctggacaagattaattcaaaagctctgtataaggaaattgttcaggaaacatatgagaat
tgcaaggttcttttaggctctgagctcataaaatctagttctgaagagcgctctttgcta
aaaaatttgggaagctggcttgggaaacttacaattggtcgaaatcaagttcttagggct
cgtgatattgatcctaaatctttgattatagaggcgtacgagaaaggattgatgattgct
gtgattccttttacgtctaagattttggaaccatgtcaaagcagtctagcttatcaacct
ccaaatccttggacaatgggtattcttgccttgcttactgagatctatgcgatgccaaac
ctaaagatgaatcttaaatttgacattgaggtgctgtttaaaaatcttggtgttcagata
aaagaagtgaaccctacttctcttttaagagatcgtgtgcgagtagttgaaggaaatcct
gatttttcaaacaaagagtttgtagcaccacagcaaccaatttcttctgaagatcaagtg
gcaataccagagcccatggaaccgcctcctaaacctcagcttcctgttccaatttctccg
tatgttcctgctgaggatgataagggtggtagtatggggttttctgaccagcttccttca
gctcaaggattgctccaatctgctggatctcaatctcaatatagcatgactcagttaccc
ccttcaattcctagccttggagcacatgtcgtcgtgaattcaaagctgaataatatgggc
ttacatgtgcacttccagagagttcttccacttgctatggatagagctatcaaagaaatt
gtgcctggtatagtgcagcgtagtgtttccatcgctactcaaactactaaggagcttgtt
attaaggattatgctttggagtcagatgagagtcgcatatataatgctgcgcatttgatg
gttgctagtctttctggaagtctagctcatgtgacttgcaaggaacctctgcgtggctca
ataactagtcagctgcgtaatatgcttcaaggagtaaatgttggaagtgaagttttagaa
cagtatgtacagctcgtgaccaatgacaaccttgatttgggttgtgcaatgattgaacaa
gcagcacaagagaaggctgtacaaacaattgatgcagaaatctcacaacaactttccttg
agaagaaagcacagagaaagtcttggttcctcaatatatgatgctaatatatatgcacaa
ggtgcaatgggtatcttgcccgaaactcttcgtcctacccctgggcgcttgtctttttcc
cagcaacgtgtttatgaggattttgtgcggcttccctggcagaaccaacagtcgagtcaa
agtgttaatggtacgcttgctgctcattctccttctccttcccctgctggtggaagcttc
ccgcgcacattcagtgcatcttcaggacagctaagttcaaatatctactctggactcggg
aatactagttttggtgtgggtgctcagcctattgatcttgtttctgatgaaatggaacca
tcttcacagatacttagtactgctgctcttagtcagataagaacttctgaaagtgttggc
tctcagcgctctgagaatgattcaaccccggtgtcttcttctggtgtgtcagccatggaa
gcactaccagttgaatcagctgcaagtatgaaggatcctggagtaacctcccaatcacca
ccgcaaggatctgtgcctataggaactggtctcttagaaccttcattgactattggagat
gtgctggacaaataccagttagttgcattgaagttggaaactgccctttctagtgatggt
agagaagcggaaattcagcctattgtttcagagattccacagatcatactaaaatgtggc
aaccgagatgaagctgctttagctgtcgcacaaaaggttttcaaatctttgtatgagaat
tcaggcaatggtttgcacattgctgctcatcttgcaattttagctgcaattcgtgatgtg
tgcaaacttgtggtgaaggagcttactagctggttgatttattcagatgaggaacggaag
ttcaataaggatattactgttggcctgataagaagggagttgttgaacttggccgaatat
aatattcatatggcgaagcttcttgatgcaggaaggaacaaaattgcaactgagtttgct
gtttctcttctccaaactttggtgaaagaagaacctaaggtcatttcagagcttcagaat
ttagttgaaaacctggcaaagcagcttgctgcgaggccggggtcgcctgagttgttgcag
cagttagttgaaacggtgaaaaatccagctgctactgttggtggcctcaccagtcctagt
acagggaaggatgataagaaccgacaaactagagaccaaaaggtttctcaatctgtggca
agtaagggtgagtacaacagtgtagaagtaatggagccggatgcctctagtttccagaag
caggtttctctactttttgcagagtggtatcggttatctgaacttccttctggaactgat
actccatgcatcagatttgttatacagctacatcaaaatggtttacttagaggagatgac
ataacggagcgcttcttccgggttcttttggaaatatctgtgtcacattttggtgaggtg
atgcagtcatctcaacaagtgcagtcttcttttctggcaattgatatttatgctaaacta
gtatattcaatcttaaagcattgcccagtggatcaggggtcaagcaaactctttctctta
ccaaagattttagctgtaactgtgagatcaattcaaaaagatgctgatgaaaagaaagaa
gactttaatccaaggccatattataggctctttattaattggctgttagactttggttcg
ttagaccctgtgcacgatggtgttaatttccaggttttgtcagcttttgcgaatgcattc
catgctttgcagccccttaaagtacctgctttcagctttgcatggctagaactagttagt
cacagaactttcatgcctaagttgcttaccggcaactctcagaaggggtggccctttctt
catcgcttgttggttgacttatttcagttcatggagcctttcttgaggaatgcagaaatg
ggagaattgatacgctttctgtaccaaggaactctgagagtgctgttggtgctgctgcat
gattttccagaattcttgtgtgactttcattttagtttttgtgatgtcatacctcccagc
tgcatacagatgcgaaatataatcctcagtgcttttcctcgcaacatgagacttccggat
ccttcaactccaaatttgaagattgatttgctggatgagatgagccaagcacctcgtata
ttgtccgaagttgatgcagctttgaaggcaaagcagatgaaagctgacgttgatgagttt
ctcaggacaaggcaacaatcatccccatttctgagtgatctgaagcagagattactactt
ccacctagtgaggcttcccatgctgggacctgttacaatgtacctctgatcaactcactt
gtattgtatgttggaatgcaggcaattcagctgcttcaggctcggaaccggtcacaacct
cagtcagtcagcagtgatccattggcagctaaagcagcattggatatattccaaacttta
attagggatttggatactgaatgccgctatctatttctaaatgcaattgctaaccagttg
cgttatccaaatactcacacacattacttctccgtcatcctcctctacttattttctgat
gcgcaccaggagatcattcaggaacaaattaccagagtactgttagaaaggctaattgtt
aacaggccacatccgtggggactgttgattacatttattgaactaatcaagaatcctgat
tataatttctggaaccgtaccttcactcggtgtgcacctgaaattgaaaaattgttcgag
tccgtttcgacctcgtgtggggggccaaagcctgttaatgaaagcatggttggctccgga
ggattatcagataatgctcattga
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integrated database retrieval system
