Culex quinquefasciatus (southern house mosquito): CpipJ_CPIJ013201
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Entry
CpipJ_CPIJ013201 CDS
T01079
Name
(GenBank) DNA mismatch repair protein MSH6
KO
K08737
DNA mismatch repair protein MSH6
Organism
cqu
Culex quinquefasciatus (southern house mosquito)
Pathway
cqu03430
Mismatch repair
Brite
KEGG Orthology (KO) [BR:
cqu00001
]
09120 Genetic Information Processing
09124 Replication and repair
03430 Mismatch repair
CpipJ_CPIJ013201
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
cqu03400
]
CpipJ_CPIJ013201
DNA repair and recombination proteins [BR:
cqu03400
]
Eukaryotic type
SSBR (single strand breaks repair)
MMR (mismatch excision repair)
Mismatch and loop recognition factors
CpipJ_CPIJ013201
BRITE hierarchy
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
MutS_V
MutS_III
MutS_I
MutS_II
MutS_IV
Motif
Other DBs
NCBI-ProteinID:
EDS38395
VectorBase:
CPIJ013201
UniProt:
B0X103
LinkDB
All DBs
AA seq
1130 aa
AA seq
DB search
MSKNKDKLNTSSNTLFNYFAKSPATTPKLKPSSSGGGGTPKTVKQEKVTPSPARKESVVP
EKVPKDEEDEEEVQPMKKRRRIIMDESEEDSDDDSENKVKNEKTPPKVVQLAAFKRVETP
KNGGESPVQKKIKLEVGVEAAKELPAAKEDDDDGPVLEEPTIWLHQKLDFLKPDKIKDIQ
GNKANSEKYDPRTLFVPESYLATLTPAMRQWWELKSRHYDCVLFFKVGKFYELYHMDASV
GVKELGFSYMKGEFAHSGFPEQAYERMATSLVERGYKVARVEQTETPDMMSERCKKNKTN
SKYDKVVKREICQVSLKGTEVYGQQVQMTQSADPNYMLAIAERSAGKGKSGGVRYGVCFI
DTSLGIFHLGEFDDDGQASRLLTLLSHYAPALVLHERSLVSPGIHQIFKTVLAGVRKEPL
TNESQFWSAEKTLKYLAENHYGSSSDEKSAKWPEAVRCLLDKNDHLGLTPNEDSELSLKA
LGGCIWYLKRCLLDQQIVALAKFELYIPPDDNVTRKQLKISNSNRFMVLDAITLSNLRLT
DGELSLLNRLDHCCTKFGKRLLHHWVCSPSCEREIIIQRQDAIKELVEDINLLQDVRQIL
GELPDLERMLAQIHSFGNAERMKNHPDGRAILYEEQTYSKKKIQDFICTLRGFKALTRLP
ELFAGVKSDLLIRLTQLTLKGGVFPDMASKISFFEESFDHEAALKTGVIAPEKGLDTEYD
AVQRDIQGILDELEEYKRKQEKYFGCKIDYFGSDKKRFQLEIPEGAAKKANSGYSLEGQK
KGKNGVKRYHTDETREFLKRMMQTEDQRKVVLKDLARRIFEKFSSAYDMWKTCVDLVGTL
DVLTALAEFGRSSGSTCFPEILDTDEEKGQIFELSEGIHPCVSDPENYIPNGVSLGQDGT
RLILLTGPNMGGKSTLMRQVGVLAIMAQIGAPIPAESCRLTLIDRIFTRLGANDDIMAGH
STFLVELNETSTILKHATEKSLVLLDELGRGTATYDGTSIAGAVVQFLAELKCRSMFSTH
YHNLVDNFERDERILLGHMACMVEKEDDEDPTQETVTFLYKYAPGSCPKSYGFNAAKLAG
MPPQIIKRAYELSKTVEAEALKRKTFTKSLLQADRTEVQDLLRKLKGCRL
NT seq
3393 nt
NT seq
+upstream
nt +downstream
nt
atgtccaagaacaaagataaactaaacaccagctccaatacgcttttcaattactttgcc
aagtcacccgcaacaacgcccaagctcaaaccatcgagctcgggcgggggaggaactccg
aagacggtcaagcaggagaaagtgaccccgtcgccggcacgcaaggaatccgtggttccg
gaaaaggttcccaaagatgaggaggacgaggaagaagtgcagccgatgaagaagcgccgc
cggatcatcatggacgagtccgaggaggacagcgacgacgattccgaaaataaggtcaaa
aatgagaaaacacccccgaaggttgttcaactggccgcgttcaagcgggttgaaacgccg
aagaacggcggggaatcgccggtgcagaagaagataaagcttgaggttggggtggaagca
gcgaaggagctgccggcggcgaaggaggacgacgatgatgggccggtgctggaggaaccg
acgatttggctgcatcaaaagttggactttttgaagccggacaaaattaaggacatacaa
ggaaacaaggccaacagtgaaaagtatgacccaaggactctgttcgtaccggagagctac
ctcgcaacgttgacgccggctatgcggcaatggtgggagttgaagtcgcgacactacgat
tgcgtgttgttcttcaaagttggcaaattctacgagctttaccacatggatgcctctgtc
ggggtgaaggagctgggtttttcgtacatgaagggcgagtttgcccacagcggatttccg
gagcaggcgtacgagcggatggccacatcgctggtcgaacggggctacaaggtagcccgg
gttgagcaaacggagacaccggacatgatgtcggagcggtgcaagaagaacaaaaccaac
agcaagtatgacaaggtcgtgaagcgcgagatctgccaggtgtcgctcaagggcacagaa
gtttacggccaacaggtccagatgacccaaagcgcagaccccaactacatgcttgcgatt
gcggagcgcagcgccgggaagggtaaatctggtggagtccgttacggcgtctgctttatt
gacacttcgttgggtattttccacctcggagagtttgatgacgatggccaggcgtctcgt
ttgttgaccctgttgtcccattacgctccggcgctggttctgcacgagcgcagcttggtt
tcgccgggcattcaccagatcttcaagacggtactggccggagtgcgcaaggaaccactc
accaacgagtcccagttttggtcggcggagaaaacgttgaaatacttggcggagaaccat
tacggcagctcgagcgacgaaaagtcggccaagtggccggaagcggtccgatgtctgctc
gacaaaaacgaccatctcggtcttacgcccaacgaagattctgagctatcgctgaaagcg
ctcggcggttgcatctggtacctgaagcgctgcctgctcgaccaacaaatagttgccctg
gccaaattcgagctgtacattcccccggatgacaacgtgactcggaagcagctgaagatc
tccaacagcaaccggttcatggtgctcgatgcgattacgctgagcaacctgcgtctcacg
gatggcgagttgtcgctgctgaaccgcctggatcactgctgcacaaagtttggcaaacgg
ctgctccatcactgggtttgttctccgagttgcgagcgcgaaatcatcattcaacgccaa
gacgccatcaaagaacttgtagaggacatcaacctcctgcaggatgtccgtcaaattcta
ggagagctgccagacctcgagcgaatgctggcccaaattcacagctttggaaatgcggag
cgcatgaagaaccatccggacggccgggccatcctgtacgaagagcagacgtatagcaag
aaaaaaatccaagacttcatctgtaccctgcgaggattcaaggccctaacccgactccct
gaactattcgctggggtcaaatccgacctcctaattcgtctgacacaactaaccctaaaa
ggcggtgtcttcccggacatggcgagcaagataagcttcttcgaggaatcgttcgaccac
gaagcggccctgaaaaccggcgtcattgcgccggaaaaaggattggacacggagtacgat
gcggtgcagcgggacattcaggggattctggacgagctggaggagtacaagcgcaagcag
gaaaagtattttggctgcaagatcgactactttggcagcgataagaagcggttccagctg
gagattcccgagggagcggcgaagaaagccaacagcgggtactcgctagaagggcagaaa
aagggcaaaaatggagttaagcgataccacacggacgagacgcgcgagttcctgaagcgc
atgatgcaaaccgaggaccagcggaaagtcgtactgaaggacttggcccggcgtatcttc
gaaaaattctccagcgcgtacgacatgtggaagacgtgcgttgatttggtgggaacgctc
gacgtgctgactgcgctggccgagtttggacgcagctcgggcagtacgtgcttcccggag
attctggacaccgacgaggagaaagggcagattttcgagctcagcgaaggaattcacccg
tgtgtgagcgatccggaaaactacatcccgaacggagtgagtcttggccaggatgggact
cggttgatcctgttgaccgggccgaacatgggcggaaagagtacgctcatgagacaggtt
ggagtgttggcgatcatggctcagattggtgctccgattccggccgaaagctgccgtttg
acactgattgaccgcatttttacacgcttgggggcaaacgacgacatcatggctggtcac
agcacgttcctggttgagctgaacgaaacttcgacgattttgaagcacgccacggagaag
agtctggtgctgctggacgagttgggacgaggaaccgctacgtacgatggaacgtcgatc
gccggagccgtggtccagtttctggcggaactcaagtgtcgatcgatgttttccacgcat
tatcacaatttggttgataacttcgaacgggacgagcgcatcctgctggggcacatggcc
tgcatggttgagaaggaggacgacgaagatccgacccaggaaacggttacattcctgtac
aagtacgctcccggatcgtgccccaagtcgtacgggttcaacgcagccaagctggccgga
atgccaccgcagatcatcaagcgtgcatacgagctctccaaaacggtcgaggcggaagcg
cttaagcgcaaaaccttcacaaaatcgctgctccaagcagaccgcaccgaggtgcaggat
ctgctgcggaagctgaagggatgccggctttag
DBGET
integrated database retrieval system
