Capsella rubella (pink shepherd's-purse): 17877435
Help
Entry
17877435 CDS
T02984
Name
(RefSeq) putative pectate lyase 14 isoform X1
KO
K01728
pectate lyase [EC:
4.2.2.2
]
Organism
crb
Capsella rubella (pink shepherd's-purse)
Pathway
crb00040
Pentose and glucuronate interconversions
crb01100
Metabolic pathways
Brite
KEGG Orthology (KO) [BR:
crb00001
]
09100 Metabolism
09101 Carbohydrate metabolism
00040 Pentose and glucuronate interconversions
17877435
Enzymes [BR:
crb01000
]
4. Lyases
4.2 Carbon-oxygen lyases
4.2.2 Acting on polysaccharides
4.2.2.2 pectate lyase
17877435
BRITE hierarchy
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
Pectate_lyase_4
Beta_helix
Motif
Other DBs
NCBI-GeneID:
17877435
NCBI-ProteinID:
XP_006285259
UniProt:
R0F8B6
LinkDB
All DBs
Position
Unknown
AA seq
435 aa
AA seq
DB search
MVVLTRTLFSISAALVIIISLFVHVNAVQETRETKQESSRNTSTVDNEWHEHAVKDPDEI
AAMVDTSIRNSTYRRKLGYFSSCSTGNPIDDCWRCDKKWHRQRKRLAGCAIGFGRNAVGG
RDGRYYIVTDPSDHDPVNPKPGTLRYAVIQDQPLWIVFKRDMVITLRQELIMNSFKTIDG
RGSNVHIAGGACITIQYVTNIIIHGINIHDCKRTGNAMVRSSESHYGWRTMADGDGISIF
GSSHIWIDHNSLSNCADGLIDAIMGSTAITISNNYMTHHNEAILLGHTDSYTRDKMMQVT
IAYNHFGEGLIQRMPRCRHGYFHVVNNDYTHWEMYAIGGSANPTINSQGNRFLAPGNRFA
KEVTKRVNAREGEWNNWNWRSQGDLMLNGAYFTSSGAGASSNYARASSLAAKSSSLVGML
TSSSGALKCRIGTLC
NT seq
1308 nt
NT seq
+upstream
nt +downstream
nt
atggtcgtccttacaagaacactgttctcaatctcagcagctctagtcataatcatatca
ctctttgtccatgtaaatgcagttcaagaaacaagggaaacgaaacaagaaagctcaaga
aacacatcaacggttgataatgaatggcatgaacatgctgtgaaagacccagatgaaata
gcagcaatggtcgatacgagcatacgtaacagtacgtacaggagaaagctaggctacttc
tcctcttgttcaacaggaaacccgatcgatgattgttggcgatgcgataaaaaatggcat
cgccagagaaaacggctagcgggttgcgcgattggtttcggccgtaacgcggtcggaggc
cgtgatggacgttactacattgttactgatccatctgatcatgaccctgttaatcctaaa
cctggtacactacgttacgctgtgattcaagaccaacctctatggattgtctttaaacgt
gacatggtcattactttaagacaagaactaatcatgaacagcttcaaaaccatcgatggt
cgtggttcgaacgtgcatatagctggtggtgcatgtataacgattcagtacgttaccaat
attatcatccatgggattaatatacatgattgtaagaggactggtaacgctatggttcgg
agttctgagagtcattatggttggagaactatggctgatggtgatgggatctcgattttt
ggatcgagtcatatttggattgatcataattctctttcgaattgtgctgatggattgatc
gatgcaattatgggatctactgctattaccatctctaataattatatgactcatcacaac
gaggctattttgttggggcatactgattcctacacaagagacaaaatgatgcaagtaacc
attgcgtacaaccattttggagaaggtcttatacagagaatgccaaggtgcaggcatgga
tacttccacgtagtaaacaacgattacacacattgggaaatgtatgcaattggtgggagt
gctaaccctaccatcaatagccaaggaaatcggttccttgccccgggaaaccgtttcgcc
aaggaggtgacaaaaagggttaatgcaagggaaggagaatggaacaattggaactggaga
tcacaaggagacttaatgctcaatggtgcatacttcacttcatctggagctggagcttct
tcaaattatgcaagagcctctagtttggctgctaaatcatcttcccttgtaggaatgctt
acctctagctctggtgctttgaaatgcaggatcggtacgctttgttaa
DBGET
integrated database retrieval system
