Capsella rubella (pink shepherd's-purse): 17884516
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Entry
17884516 CDS
T02984
Name
(RefSeq) probable ubiquitin conjugation factor E4
KO
K10597
ubiquitin conjugation factor E4 B [EC:
2.3.2.27
]
Organism
crb
Capsella rubella (pink shepherd's-purse)
Pathway
crb04120
Ubiquitin mediated proteolysis
crb04141
Protein processing in endoplasmic reticulum
Brite
KEGG Orthology (KO) [BR:
crb00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
04141 Protein processing in endoplasmic reticulum
17884516
04120 Ubiquitin mediated proteolysis
17884516
09180 Brite Hierarchies
09182 Protein families: genetic information processing
04121 Ubiquitin system [BR:
crb04121
]
17884516
Enzymes [BR:
crb01000
]
2. Transferases
2.3 Acyltransferases
2.3.2 Aminoacyltransferases
2.3.2.27 RING-type E3 ubiquitin transferase
17884516
Ubiquitin system [BR:
crb04121
]
Ubiquitin ligases (E3)
U-box type E3
17884516
BRITE hierarchy
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
Ufd2P_core
U-box
Motif
Other DBs
NCBI-GeneID:
17884516
NCBI-ProteinID:
XP_006289759
UniProt:
R0FJP2
LinkDB
All DBs
Position
Unknown
AA seq
1038 aa
AA seq
DB search
MATNKPQRSPVEIEDIILRKIFYVTLTEPTDSDPRIVYLEMTAAEVLSEGRELLLSRDLM
ERVLIDRLSGDFSAAEPPFPYLIGCYRRAYDESKKIQSMKDKNLRSEMEIVTKQAKKLAV
SYCRIHLANPDMFGNADTLSGGLDTRLKKKNRSPVLPLIFAEVGSGSLDMFGSSSNGVQA
PPGFLDEFFKDSDFDSLDPILKELYEDLRSTVINVSVLGDFQPPLRALKYLVSLPVGAKS
LVSHEWWVPRGAYMNGRAMELTSILGPFFHISALPDNTLFKSQPDVGQQCFSEASERRPA
DLLSSFSTIKNFMNILYSGLHDVLMILLKSTDTRECVLQFLAEVINANASRAHIQVDPVS
CASSGMFVNLSAVMLRLCEPFLDPHLTKRDKIDPKYAFCGHRLKLSDLTALHASSEEVSE
WIDKDATANTDGAGPENGNESRLLQSKEATSSSSNASGQNAKSATKYTFICECFFMTARV
LNLGLLKALSDFKHLAQDISRGEDNLATLKAMRDQAPSPQLELDITRMEKELELYSQEKL
CHEAQILRDGDFIQRALSFYRLVVVWLVRLVGGFKMPLPSTCPMEFSCMPEHFVEDAMEL
LIFASRIPKALDGVVLDDFMNFIIMFMASPEYVRNPYLRAKMVEVLNCWMPRSSGSSSAT
STLFEGHQLSLEYLVRNLLKLYVDIEFTGSHTQFYDKFNIRHNIAELLEYLWQVPSHRNA
WRRIAKDEEKGVYLNFLNFLVNDSIYLLDESLNKILEIKQIEAEMSNTAEWEQRPTQERQ
ERTRLFHSQENIVRIDMKLANEDVTMLSFTSEEITAPFLLPEMVERVANMLNYFLLQLVG
PQRKSLSLKDPEKYEFRPKQLLKQIVRIYVNLARGDSENIFPGAISSDGRSYNEQLFNAG
ADVLRRIGEEGRIIQEFMELGIKAKAAASEALDAEAALGEIPDEFLDPIQYTLMRDPVIL
PSSRITVDRPIIQRHLLSDNHDPFNRAHLTSEMLIPDVELKARIDEYVKSHQSKKRTSGE
DSSTKERIQTTSSDMLID
NT seq
3117 nt
NT seq
+upstream
nt +downstream
nt
atggcgacgaataagccacaacgatctccggttgaaattgaggatattatcctccggaag
atattttatgtaaccctaacggaaccaactgattccgatcctcgtattgtttacttggag
atgacggccgctgaggtcctcagcgaaggtagagagctcttgctttctcgtgatttgatg
gagagagtgctcatagatcgtctctccggcgacttctctgccgcagaaccgccctttccg
tacttaatcggttgctaccgtcgtgcttacgacgaatcgaagaaaatccagtcgatgaag
gacaagaaccttagatcggagatggagattgtcactaaacaggcgaagaagctcgctgtt
tcttactgtaggatacacttggcgaatcctgacatgtttgggaacgcggatacacttagc
ggtggactggatactaggctgaagaagaagaataggtctcctgtgctcccattgattttc
gccgaggttggttctggttcattggatatgtttggaagtagtagcaatggggttcaggct
cctccgggatttttggatgagttcttcaaagactcagattttgatagcttggaccctatt
ttaaaggagctttacgaggacttgaggtctacggttattaatgtatcagtgcttggagat
ttccagccaccattgagggctctcaagtatcttgttagcttaccagtaggagcaaaatct
ctggttagtcatgagtggtgggttccacgaggcgcctatatgaacggtcgagccatggag
ctgacaagcattcttggccctttcttccatattagtgcactgccagataatacgctattc
aagagtcaacctgatgttgggcagcagtgcttctctgaagcatcagaacgtcgtcccgca
gacttattatcatccttctccaccattaaaaattttatgaacattttgtacagcgggctg
catgatgtactgatgattttacttaaaagtactgatacccgtgagtgtgttctacagttt
cttgcagaggtgatcaatgcaaatgcgtctagagcccatatacaggttgatccagtctct
tgtgctagctcaggcatgtttgtcaacctcagtgcagtaatgctccggctctgtgaacca
tttttagatccgcatttaactaaaagagataagattgatccaaaatatgcattctgtggt
catcgcttgaaattaagcgacttgactgctcttcatgcatcatccgaagaagtttctgag
tggattgacaaagatgctacggcaaacacagatggtgctgggccagaaaacgggaacgaa
agtcgcttgttacaatccaaagaagccacaagttctagtagtaatgcttctgggcaaaat
gcaaagtcagcaactaagtacactttcatttgtgaatgcttctttatgactgcaagggtc
cttaatttgggtctcctaaaagcactctctgactttaaacatcttgctcaggacatttcg
agaggtgaagataatcttgcaacactaaaagccatgagagatcaagcaccttctccacag
ttggaacttgatataacccgaatggaaaaagaactagagctgtattctcaggaaaagctc
tgccatgaagcccaaatattaagggatggcgattttattcagcgagctctgtctttctat
cgactagtggttgtctggttagttagactagttggtggctttaagatgcctttaccatca
acttgtcccatggaattctcttgtatgcctgagcattttgttgaagatgcaatggagtta
ctgatatttgcttcaagaattcccaaagctttggatggggtagtactggacgactttatg
aacttcataattatgttcatggcaagtcctgagtatgttagaaacccatatctcagagca
aaaatggttgaagtcctgaactgctggatgcctcgttcaagtggttcttcatctgctaca
tctactctttttgaggggcatcagttatcactcgagtatcttgtcaggaatttactgaaa
ctatatgtggacattgagttcacaggttcacacactcagttctatgacaaattcaatatt
cgtcacaacattgccgagcttttggagtatctctggcaggtgcctagtcaccggaatgct
tggagacggattgcaaaagatgaagagaagggcgtgtacttgaatttcttaaacttctta
gtcaatgatagcatctatcttcttgatgaaagtcttaacaaaattctggagattaaacaa
atcgaggcagagatgtcaaatactgcagaatgggagcagcgaccaacacaagagagacag
gagagaacaagactcttccattctcaggagaatattgttagaatcgacatgaagctggca
aatgaagatgtgactatgctttcatttacatctgaggagatcactgccccttttctactc
cctgagatggttgagagggttgcaaatatgcttaattacttcttgctacaactcgtgggt
ccacagcgtaaatctttaagcttgaaagatcctgaaaagtatgagttccgtccaaaacag
ttgcttaaacagatcgttcgcatatatgttaatctcgcaagaggagactcggaaaacata
ttccctggtgccatatccagtgatggccgatcatataacgaacagctattcaatgcagga
gcagatgtgcttaggagaataggtgaagaaggaagaatcattcaagagtttatggagtta
ggcattaaagccaaagctgctgcctctgaagctctggatgctgaagctgcgcttggtgaa
ataccagacgagttccttgacccaattcagtacacactaatgagagatccagtgatactt
ccaagctcaagaatcacagttgatcgacccatcatccagcgtcatcttctcagcgacaat
catgatccctttaaccgagcacatttgacatcagagatgttgataccggacgtcgagttg
aaggcgagaatcgatgagtatgtgaagtcgcatcagtcgaagaaacggacaagtggagaa
gatagcagcaccaaggagaggatacagactacgagcagtgatatgttaattgattaa
DBGET
integrated database retrieval system
