Capsella rubella (pink shepherd's-purse): 17893378
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Entry
17893378 CDS
T02984
Name
(RefSeq) tRNAse Z TRZ4, mitochondrial isoform X1
KO
K00784
ribonuclease Z [EC:
3.1.26.11
]
Organism
crb
Capsella rubella (pink shepherd's-purse)
Brite
KEGG Orthology (KO) [BR:
crb00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03016 Transfer RNA biogenesis [BR:
crb03016
]
17893378
Enzymes [BR:
crb01000
]
3. Hydrolases
3.1 Acting on ester bonds
3.1.26 Endoribonucleases producing 5'-phosphomonoesters
3.1.26.11 tRNase Z
17893378
Transfer RNA biogenesis [BR:
crb03016
]
Eukaryotic type
3'processing and CCA adding factors
3'processing factors
17893378
Prokaryotic type
17893378
BRITE hierarchy
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
Lactamase_B_4
Anti-Pycsar_Apyc1
Lactamase_B_2
Lactamase_B
Motif
Other DBs
NCBI-GeneID:
17893378
NCBI-ProteinID:
XP_006299403
UniProt:
R0G9S0
LinkDB
All DBs
Position
Unknown
AA seq
951 aa
AA seq
DB search
MKMLTSMPHHHHHHHLPQNLGLFGFSPLKSSSFSLFLRPFSLYPIFASSSPPPSRRRPPP
RTAGYRRSDPSHPRRKWSSFEEQNRKGRPPMERDKASTSFNPSSDSFEFNKRRAAGLDKI
DKPKKNLKRNTRTLNPTNTIAYVQILGTGMDTQDTSPSVLLFFDKQRFIFNAGEGLQRFC
TEHKIKLSKVDHIFLSRVCSETAGGLPGLLLTLAGIGEEGLSVNVWGPSDLKYLVDAMRS
FIPRAAMVHTRSFGPSLNTSDSTPQIGSSKPTDPYVLVDDEVVKISAILLEPSRLEESGS
KTGETSVVYVCELPEIKGKFDPKKAMALGLRAGPKYSYLQSGQSVKSDFKDITVHPSNVM
GPSVPGPVVLLVDCPTESHAEELLSNPSTKSYYSCPDNSTDGAKLVNCIIHLSPASVTNS
STYQSWMKRFHSAQHILAGHETKNMEFPILRASSRITARLNYLCPQFFPAPGIWSSQHVN
NSIESTSMSKCFDSNLGESISAENLLKFTLRPYGNLGVDRSCIPSRLTSLRVMDELLSEI
PEINSKTEEIKRLWNGLHNKMMIEEPWLGESTVPSCLENIRRDDMEIVLLGTGSSQPSKY
RNVTAIYIDLFSRGSILLDCGEGTLGQLKRRYGLEGADEAVRNLRCIWISHIHADHHTGL
ARILARRRELLKGVAHEPAIVVGPRPLKNFLDAYQRLEDLDMEFLDCRNTTTTSWASVET
TSPDKIIKSGNAEGSLFSKGSLMQSIYKRPSSPLTDNSSALPFLKRLKKVLGEMGLEDLI
SFPVVHCPQAFGVVVKAAERKNITGDEIPGWKMVYSGDTRPCPEMVEASKGATVLIHEAT
FEDALVDEAVAKNHSTTKEAINVGSLAGVYRTVLTHFSQRYPKIPVIDESHMHNTCIAFD
MMSINMADLHVLPKILPYFKTLFRNQVVEEEDEETDDESLISDKVPSFFIN
NT seq
2856 nt
NT seq
+upstream
nt +downstream
nt
atgaaaatgttaacttcaatgcctcatcatcatcatcatcatcatctaccccaaaaccta
ggccttttcggattttctcctctcaagtcttcttctttctcgctctttctcagacccttt
tctctctacccaatcttcgcttcgtcttctcctcctcccagtcgtcgtcgtcctcctcct
cgcaccgccggttaccgtcgcagcgacccttctcatccgagacgcaagtggagtagtttc
gaggagcagaacagaaaaggtaggcctcctatggagagagataaagctagtactagtttt
aatccttcttctgattctttcgagtttaataagagaagagctgcgggattggataagatt
gataagcctaagaagaatctcaagaggaacactcgcacccttaaccctaccaacaccatt
gcctatgttcagatccttgggacgggaatggatacacaggatacatcgccttctgtatta
ctcttctttgacaagcaaagattcatctttaatgctggagaggggttgcaacggttctgt
acagagcataagattaagttatcaaaggtggatcatatctttttgtctcgtgtgtgctca
gaaacagcaggcgggcttccaggtcttctattgactcttgccggtattggtgaagaagga
ctatccgtaaacgtatggggtccttcagatctcaagtatttagttgatgctatgaggtca
tttatccctcgtgctgccatggttcatacaagaagttttggtccatcgttgaatacatct
gactccacgcctcagattggctcaagtaaacccacggatccttatgttcttgtggatgat
gaagttgtgaaaatctctgccattctcttagaaccgagtcgcttagaggaatccggcagc
aaaactggtgaaacgtcagttgtatatgtatgtgaattacctgaaatcaaaggaaaattt
gacccaaagaaggccatggctcttggactgagagctggtcctaaatacagttatcttcag
tctgggcagtcagtgaagtcagattttaaagatattacggttcatccgagtaatgtgatg
ggaccttctgttcctggtcctgttgttttgcttgtggattgtccaacagagtcacatgca
gaggaactgctttctaatccgtctaccaagagttattattcatgtcctgacaactcaaca
gatggagctaaacttgttaattgtattattcatctaagtccagcttctgtaacaaatagc
tctacttaccaaagctggatgaagagattccattctgcccagcacattctcgctggacat
gaaacgaagaatatggagtttccaatcctgagagccagttctagaatcacagccagactt
aactatttatgcccacagttctttcccgctcctggaatttggtcttctcagcatgttaat
aactcgatagaatccacttctatgagcaagtgcttcgattcaaatcttggtgaaagcatt
tccgctgaaaatctcctcaagttcactttacgtccatatggtaatcttggggtagacaga
tcttgtatccctagtcgattaacatccttacgagtgatggatgagcttctttcagaaatt
cctgagatcaacagtaagactgaagaaatcaagcggttatggaatggactacacaacaag
atgatgatcgaagagccatggctgggtgaaagcactgttccaagctgtcttgaaaacatt
agacgagacgacatggaaatagttcttttgggcactggttcgtcccaaccctcgaaatac
cgaaatgtcaccgcaatttacatcgaccttttctctagaggcagtattctcttggactgt
ggagaaggtaccttaggccagcttaaacgaagatatggtttagaaggagctgatgaagca
gtcagaaacttgagatgtatatggatctctcatatccatgctgatcaccatacgggtctt
gcaagaatccttgctcgtagacgtgagcttctgaaaggagtggctcatgagccagcaatt
gtggttggaccgagaccgctaaagaactttctcgacgcatatcaaagactcgaggattta
gatatggagtttcttgattgcaggaacaccacaacaacttcttgggcttctgtagaaacc
accagccctgataaaataatcaaaagcggcaatgcagagggttctttgttcagtaaagga
agtctaatgcaaagtatatataaaagaccgagtagcccactgaccgacaattcttcagct
ttaccattcttgaagagactgaaaaaggtcctcggcgaaatggggttggaggatttgatt
agctttcctgttgtgcattgccctcaagcctttggggttgttgtaaaagcagcagaaagg
aaaaacatcactggagatgagatcccggggtggaaaatggtttactcgggggacacaagg
ccttgtcctgagatggttgaagcttcaaaaggagcaaccgttcttatacatgaggcaact
tttgaggatgcgttggtagatgaagctgtggctaaaaatcatagcacaaccaaagaagca
atcaacgttggatctttagcaggcgtataccgaaccgtactgacacattttagccagaga
tacccgaagattccggtgattgacgagtcgcatatgcacaatacatgcattgcctttgat
atgatgagtataaacatggcggatctacatgtgcttccaaagattttaccatacttcaaa
actctcttcagaaatcaggtggttgaagaagaagacgaagagactgatgacgagagctta
ataagtgacaaagtcccaagctttttcatcaattag
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