Capsella rubella (pink shepherd's-purse): 17897544
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Entry
17897544 CDS
T02984
Name
(RefSeq) CCR4-NOT transcription complex subunit 1 isoform X1
KO
K12604
CCR4-NOT transcription complex subunit 1
Organism
crb
Capsella rubella (pink shepherd's-purse)
Pathway
crb03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
crb00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
17897544
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
crb03019
]
17897544
Messenger RNA biogenesis [BR:
crb03019
]
Eukaryotic type
mRNA surveillance and transport factors
mRNA cycle factors
P-body specific factors
17897544
mRNA degradation factors
3'-5' decay
Ccr4-NOT complex
17897544
BRITE hierarchy
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
Not1
CNOT1_CAF1_bind
CNOT1_TTP_bind
ARM_Cnot1
DUF3819
CNOT1_HEAT
NOT1_connector
WEF-hand
Motif
Other DBs
NCBI-GeneID:
17897544
NCBI-ProteinID:
XP_006306283
UniProt:
R0GTP9
LinkDB
All DBs
Position
Unknown
AA seq
2377 aa
AA seq
DB search
MLMSPSKVAGHTRFLLQNLHDSDVDSIAQDLSQLFDFGVETSVPVLKTCLDCFTVRKSQP
NTLQLEKVVSLVFKRVMKLSNLGTLLSHALKDVELTQVFVDDLTNTLEFSTSDKISFALA
LTDFERLDAKTTGRNLLLAEIEELCANTGQIGSTEQIQNVLLFLQKYEDLSRHLDSFIQI
LSNSAHPSDEFSFALSPIFSEVHEADVFRSMDFHSDSAENEFDAILAEIDKEIGVGDLMG
ELGCGLTADAQQCKEILSSFAPLTEATISRILVNVARTCADLDDNHTTFSTFSLALGCCS
PSELPTPKSWNVDILVDTIKLLAPGTSWRKVIENLDHDGFDIPNMESFSFLMRFYKTACE
ELFPLDAVCTSVWKNMEGQLSFLKHAISAPPELFTFMHSPRKLVYNDNMHSHDQQLGLSN
HAWLSLDLLDVLCQLAERGHAAFVSSLLQYPLTHCPRTLLLGMTHIKTAYNLIQREVVSA
IFPVIVTNSQDSGFILNIWHQNAELFLWGILDAQNLKADSMLRIVEICHELKILSVVLES
VPVSFSIKLAVLASLRGLLDIENWLPNGLHVYKDLFAEECLKFVKNVHFSDAQDFMAKHF
HPSDPLSDLHLDATTSLLKVLKAHANLITSNQLVEEIEKVNAAILVGNSKLQNGEAKDSS
TSNAYGDDVEAEANAYFHQMFSSQLSVDAMVQMLSRYKDSLVQREKLIFECMIANLFEEY
RFFPKYPERQLKIASILFGSVIKHQLISSLTLGMALRLVLDSLRKPADSKMFLFGSKALE
QFVNRLVELPQYCNHILQISHLRSTHPELVTVIEQALSRISSGNLESDASVSQPGPSQSF
PGNGELNGSSIGQSALQLSSPAQLQQKIEVHIDDLSKVPSVPSNESRPLLPSLSTISAEV
SVIPKNPGISSSSSTSAGFGRQTRGATSTRFGSALNIETLVAAAERRENAIEAPPSDVQD
KVSFIINNISKANIESKGKEFADILPQQYYPWFAQYMVMKRASIEPNFHDLYLKFLDKVD
SKLLFKEILQNTYENCKVLLGSELIKSSSEERSLLKNLGSWLGKLTIGRNYVLRAREIDP
KSLIVEAYEKGLMIAVIPFTSKVLEPCQNSIAYQPPNPWTMAILGLLAEIYSMPNLKMNL
KFDIEVLFKNLGVDIKEVAPTSLLKDRKREIDGNPDFSNKDLGVTHISQPQMISEPKSIS
PLKQIDLPLDNANSPNTDVPSKLLSQYVAPQRVYTNTLMEEEKVATLGLPDQLPSPQGLF
QSTPSPLFSISQLSAALPNIGNHVVINQKLSGFGMHFPFQRVVPLAMDRAIKEIVSGIVQ
RSVCIACQTTKELVLKDYSLEPDESRIYNAAHLMVASLAGSLAHVTCKEPLRTSISGHLR
NSLQGLSISNDSLEQIVQLVTNDNLDLGCAAIEEAATEKAIQTIDADIAQQLLLRRKQRD
GAGSSFFDPNMLSQNSISFIPESLRPKPGQLSLSQQRVYEDFVQHPWQKQPTQTSHGLSA
ASSSSTDVALGSGYGPLSGAGNAHMDMVSRPSDISVDGFESSVSLLSSQVDPAGDSASLQ
YSKPLPTSDLNLVEPSDAAMKESGTLLQTLTSAATMERVGGNNITQPSLSTRDALDKYQI
VTQKMEELVANNAGDDEIQAVVSEVPEIILRCISRDEAALAVAQKAFKALYENASSNLHV
SANLAILVAIRDVCKLVVKELTSWVIYSGEERKLNKDITIGLIQRELLSLAEYNVHMAKH
LDGGRNKSATDFAISLLQSLVTEESSVISELHSLVDALAKLASKSGSPESLQQLIDIIRN
PVTNTGGLSDCATGNENNDRQKDEKVACNTTSNADENTSIDYVESDPAGFRDRVSTLFES
WYQICELPGANENACSQYVLHLHQTGLLKGDDTTESFFRTLLEISVAHCISSEDISSGAV
QSPQQAQSPSFLAIDMYAKLVFSILKYFPEQEPSSRLFLLSEIMAVTVRCIQKDAEDKKT
SLNPKPYFRLFINWLLDLCSLDPGTDGANFQVLTAFANTFHALQPLKIPAFSFAWLELVS
HRSFMPKLLTVNGQKGWPYVQRLLVDLLQFLEPFLRNAELGGPVHFLYKGTLRVLLVLLH
DFPEFLCDYHFTFCDVIPSSCIQMRNIILSSFPRNMRLPDPSTPNLKIDLLPEIVEAPCI
LSEVDAALKAKQMKNDVDEYLMSRQQNSTFLSELKQKLLLSSSEASSAGTCYSVPLINSL
VLYTGMQAIQQLQAGETQAQNVVALQMFKYLSMELDTEGRYLFLNAIANQLRYPNNHTHY
FSFIMLYLFFESDQEIIQEQITRVLLERLIVNRPHPWGLLITFIELIKNPRYGFWKQAFI
RCAPEIEKLFESVARSCGGLKPVDEGMVSGWVSDNSH
NT seq
7134 nt
NT seq
+upstream
nt +downstream
nt
atgctgatgagtccgtccaaggtcgccggtcatacccggttcctgctccagaaccttcat
gattccgatgtcgactccatcgcccaagacctttctcagttgtttgattttggagtcgag
actagtgttcctgttctcaagacctgcttagattgcttcaccgtccggaaaagccagcca
aatacgttacagcttgagaaagtagtatcattggtttttaaacgtgtgatgaaattgtct
aatcttggaaccctgctctctcacgccctgaaagatgttgagctcactcaagtatttgtg
gatgatttgactaatacattggaattttcaacctctgacaaaattagctttgctctcgcc
ctgaccgattttgaaagattggatgcaaagacaactggacggaacttattattggctgag
attgaggaactctgtgccaatactggccagattggttctactgagcaaattcagaatgtt
cttttgtttctccagaagtatgaggatttgtccaggcatttggattccttcatacagatt
ttgtccaactctgctcatcctagtgatgaattctcttttgctctatcaccaatcttctct
gaagttcatgaagctgatgtattcaggagcatggattttcacagtgattctgctgaaaat
gagtttgatgctatcttagctgaaatcgacaaagaaattggtgttggagatctcatggga
gaattaggttgtggattaactgctgatgcccaacaatgcaaagagatcttgtcgagtttt
gcaccgttaacagaggctactatctctagaattcttgtcaatgttgctcggacatgtgct
gatcttgacgacaaccacaccaccttttcaacattcagtttagcccttggttgctgcagt
ccttctgaacttcccacgccaaagtcatggaatgttgatattctggttgatacaatcaaa
ctgcttgctcctggcacaagctggaggaaagtaatcgagaatcttgatcatgatggattt
gacatccctaatatggagtctttctcgtttttgatgcggttctataaaactgcttgcgag
gaactatttcctcttgatgctgtatgcacttctgtctggaaaaatatggaaggtcaatta
tcctttcttaagcatgcaatttctgccccaccagaacttttcacctttatgcattctcca
aggaagttggtatataatgataacatgcacagccacgatcaacagttaggactatccaat
catgcatggctgtcgctggatcttttggatgtgctatgccaattggccgagagaggtcat
gctgcttttgttagttcgttgctccagtatccactcacgcattgtcctaggaccttgctc
cttggcatgacacacatcaaaactgcttataatctcatccagcgtgaagtggtttctgct
atttttccagtgatagtaacgaattcccaggatagtggttttatccttaatatctggcat
cagaatgcagaactctttctgtgggggattttagatgcccaaaatcttaaagcggacagc
atgctccggatagttgaaatctgccatgagctgaagattctctctgttgtcttagaatca
gttccagtctcattcagtattaaattggcagtccttgcctcattgagaggtcttttggac
attgagaactggttgccaaacggcctacatgtgtataaggacctctttgctgaggagtgt
ctcaaatttgtcaagaatgtgcatttcagcgacgcacaggattttatggccaaacatttt
cacccttctgatccgttatcagatcttcatttggacgcaacaacttctcttttgaaagtt
ttgaaagctcatgctaatctgattacctcaaatcaactggtcgaggagatagaaaaggtc
aatgcagcaattttggttggtaattcgaaactgcagaatggcgaggctaaagattcatca
acttccaatgcatatggagatgatgttgaggcagaagcaaacgcttatttccatcaaatg
ttttctagtcagttgagtgttgatgcaatggttcaaatgctttcccgttacaaggactct
ttggttcaaagggagaaattaatttttgaatgcatgatcgctaatctgtttgaagaatat
cggttttttcccaagtatcctgagagacagctgaaaatagcctctatactctttggttct
gttataaagcaccagcttataagttcactcactctggggatggccctacgtctagtattg
gattctttgcgtaaacccgcagattcaaaaatgtttctgtttggaagcaaagctctggaa
cagttcgtgaatcgtctggttgaattgcctcaatactgcaaccatattttgcaaatatct
catctgcgtagcactcaccctgagttagtcactgttattgaacaagcactttcaaggata
tcatctggtaatttagagtccgatgcctctgtttcgcaacctggtccctcgcagtctttc
cctggaaatggcgagttgaatggttctagcattggccaatctgcattacagctttcttct
cccgcacagcttcaacagaaaattgaagtgcatattgatgacctcagcaaagtgcctagt
gtgccatctaatgagtcaaggccacttttgccatcgttatcaaccatttcggctgaggtt
tctgtcattccaaagaatcctggcatttcatcttcttcatcaacctcggctggttttggt
cgtcaaactcgtggagccacgtcgacaaggtttggctctgctttgaacattgaaacctta
gttgcagcagcagaaagaagggaaaatgcaattgaggctccaccctcggatgttcaggac
aaagtttctttcataatcaataatatctctaaagcaaacattgaatctaaagggaaagag
tttgctgatattttacctcaacagtattatccttggtttgcacagtacatggttatgaaa
agagctagcatcgagccaaattttcatgacctgtacctgaagtttttagacaaagttgat
tccaagctgttatttaaggagattcttcaaaatacttacgaaaattgcaaggttcttttg
ggttcagagctcataaagtctagttctgaagagcgatctcttcttaaaaatttaggtagc
tggcttggaaagttgaccattggaaggaattatgttctaagggcgcgagaaatagatcca
aaatccttgattgtggaggcatacgaaaaagggttgatgattgcggtcattccatttact
tcaaaggttctggagccatgccaaaacagtattgcgtatcagcctcccaatccttggacg
atggctatacttggcttgcttgctgagatctattcaatgccgaatctaaaaatgaatctg
aagtttgacatagaggttttattcaagaaccttggcgttgatataaaggaagtagcgcca
acttcccttctaaaggatcggaagagagaaatagatgggaatcctgattttagtaacaaa
gaccttggagtaactcatatatctcagccgcagatgatttcagagcctaaatcaatttct
cctcttaagcaaatagacctacctcttgataatgcaaattcaccgaatacagatgttccc
tcgaagttattatcacagtatgttgcccctcaacgtgtttataccaatactttgatggaa
gaggaaaaggtggcaactctaggcttgccagatcagttgccatcacctcaaggactgttc
cagtcaactccatccccattgttttctattagtcagctgtcagcagcacttcccaatatt
ggaaatcatgttgttatcaatcagaaattaagcggatttggtatgcactttccatttcag
agagtggtaccacttgccatggacagagctatcaaggagattgtgtctggtattgtgcag
cgaagtgtttgtattgcatgccaaacaacaaaagaacttgtgctgaaggattattccctg
gaacccgatgaatctcgtatatataatgcagctcacttgatggttgcaagtttagctggg
agtttggctcatgtgacatgcaaggaacccttgcgcacttcaatatccggtcatttacgg
aattctctccagggtctgagtatttcaaatgattctcttgaacaaattgtgcaacttgtc
accaacgacaatctcgatttgggctgtgctgctattgaagaggcggctacagagaaggca
atacaaacaattgatgcggacattgctcagcaattgttgttacggagaaagcaaagagat
ggtgctggatcctctttttttgacccaaatatgctatctcagaattccattagtttcata
cccgaatccctccgtccaaaacctggacaactctctctgtctcagcagcgagtttatgag
gactttgtgcaacatccttggcaaaagcagccaacccagacttcacacggtttatctgct
gcatcaagctcatctactgatgttgcacttggtagtggttatggtcctttatcaggagct
ggaaatgctcatatggatatggtctcccggccatcagatatatctgtggatggttttgaa
tcttcagtctcacttttgagctcacaagttgatccagctggtgactcagccagtctccaa
tattcaaaaccactaccaacctcagatttgaatctggttgaaccctctgacgctgctatg
aaagaatctggaacgttactgcagacattgacttcagctgctaccatggaacgagttggt
ggaaataatattacacagccgtctctgtccacaagagatgctctggataagtatcagatt
gttactcagaagatggaggaactagtggctaataatgcaggagatgatgaaattcaggcc
gtggtttctgaagttcctgaaattatcctcagatgtataagtagagatgaagccgcgtta
gctgtcgctcaaaaagctttcaaggctctttatgagaatgcatcaagtaaccttcacgtc
agtgctaacctagcaatacttgttgctattcgtgatgtttgcaagcttgttgttaaagag
ctcactagttgggtgatttattcaggggaggagcggaagctcaacaaagatattactatt
ggtcttattcaacgcgagttgctcagcctagcggagtataatgtccacatggcgaagcat
cttgatggaggaagaaacaaaagcgcaactgactttgctatttctctactccaatccttg
gtcactgaagagtcgagtgtcatttcagaactccacagtcttgttgatgcgctggcaaag
cttgcctcaaaatccggatctcccgagtcattgcaacagctaattgacatcatacgaaat
ccagttactaacacaggcggcctctctgattgtgcaactggaaatgagaacaatgatagg
caaaaagatgaaaaggttgcgtgcaataccacttctaatgcagatgagaataccagcata
gattatgtggaatcagatcctgcgggcttccgggatcgggtgtccacgctttttgaaagc
tggtatcaaatctgcgaacttccgggtgcaaatgaaaacgcgtgttcacaatatgtgttg
catttgcatcaaactggattacttaagggagatgatacgacagagagttttttccgaact
cttctggaaatttctgttgctcattgtatatcttctgaagatataagttctggtgctgtg
caatctcctcaacaagctcagagtccatcattcctcgccatcgatatgtatgcaaagctt
gtgttttcaatcttgaagtatttccctgagcaggagcctagcagcaggttatttcttctt
tcagagatcatggctgtcactgtgagatgcattcaaaaggatgcagaagataaaaagact
tcactcaatccaaaaccatattttcgattgttcatcaactggctgctggacttatgttcc
ttagatcctggcactgatggtgcaaattttcaggttctcacagcttttgccaacacattc
cacgcattgcagcctcttaagattcctgctttcagcttcgcatggctagagcttgtcagc
cacagaagcttcatgcccaaactacttacagtaaatggccagaagggttggccatatgtc
caacgattgctggtggacttgctccagtttcttgagccatttttaagaaatgctgaactc
ggaggaccagttcatttcctatacaaagggactttgagagtgttgctggttctgcttcat
gacttcccagagttcctctgtgattatcattttactttctgtgatgtgattccttcaagt
tgcatacagatgcgaaatattattcttagttcttttccacggaacatgaggcttccagat
ccttctaccccaaacttaaagattgatttgttacctgagattgtagaagctccctgtatc
ctttccgaagttgatgctgcgctgaaagcaaagcaaatgaagaatgacgtggatgagtat
ctcatgtcgaggcaacagaattcaactttcctaagcgaattgaagcagaagttacttctc
tcttccagcgaggcgagttcagctggaacctgttacagtgtaccattgatcaactcgctt
gtgctatatactggaatgcaggctattcagcaactacaggcgggtgagacacaggctcaa
aatgttgtcgccttacagatgttcaagtatttaagtatggaacttgatacagaaggacgg
tatctgttccttaatgccattgccaatcagcttcgatatcccaacaaccacactcattac
ttttcgttcatcatgctctatctattcttcgaatctgaccaggagatcatacaggagcaa
ataacaagagtgctgttggaaaggctcattgtgaaccggccacatccgtggggcctgcta
atcacattcattgagctgatcaagaatccaagatatggcttctggaaacaagccttcatc
aggtgtgcgcctgagattgagaaactctttgaatctgtagccagatcctgcggtggcctc
aagcctgttgacgagggaatggtctcgggttgggtctcagacaattctcattag
DBGET
integrated database retrieval system
