Magallana gigas (Pacific oyster): 105324909
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Entry
105324909 CDS
T03920
Name
(RefSeq) CCR4-NOT transcription complex subunit 1 isoform X1
KO
K12604
CCR4-NOT transcription complex subunit 1
Organism
crg
Magallana gigas (Pacific oyster)
Pathway
crg03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
crg00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
105324909
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
crg03019
]
105324909
Messenger RNA biogenesis [BR:
crg03019
]
Eukaryotic type
mRNA surveillance and transport factors
mRNA cycle factors
P-body specific factors
105324909
mRNA degradation factors
3'-5' decay
Ccr4-NOT complex
105324909
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Not1
CNOT1_CAF1_bind
ARM_Cnot1
CNOT1_TTP_bind
NOT1_connector
CNOT1_HEAT
DUF3819
CNOT1_1st
DUF7809
Motif
Other DBs
NCBI-GeneID:
105324909
NCBI-ProteinID:
XP_011422455
LinkDB
All DBs
Position
3:50606581..50630004
Genome browser
AA seq
2439 aa
AA seq
DB search
MNLDSLSFALAEISYSVANLTKKNFKSSVAEISHLVSQHGAEADRHLFRCLFSHVDFSGD
GRSSGKDFHQTQFLIQEFGNLLGKPNFVSTLCYAIDNPLHHQKSLKPSSQLFTQVSRVLK
LTRVQEVVFGLALLNSSNSETRNYSAQFVKQKLPDLIKSYVDAESSLKQEGGLQDVPIEV
IHLLLSSIFKCKDNFGIATEQKEIFIKTLKKDFPFEGVPVILGPLLYAEAEELSVEKLAD
TSAMPKTALEASLADMILEAGYGCTSSVEECRSNLLQFGVREITPSSVAKVLGMMARNPA
GLDVQNTQQTNMASGTGWGDMGDKGDKPGYNTWNVDVFVTVIQDLAHHLNWREVVAELDH
PNFLVLNKKGLRILLQGLKRGLQDMFPVDYIYRPWKNTEGQLSFIVHSLRNPDVFCFADY
PCHTVVIDILKSAPDDDNREIVTWKSLALVETLLRLSDSGHYQTVSELFKIPIQNCPDML
VLALLQITPTWNTLKQELISTLMPIFLGNHANSAVVLHYAWHCQGHSSTIRTLIMHSMAE
WYMRGEQHDQIRLSRILDVAQDLKALSMLLNATPFAFVIDLACLASRREYLKLDKWLSDK
IREHGEPFIQTCVNFLKRRCPQLMGGMSKDENQPQMKSQMLPTETIATMLSCLQQCARIS
SLRSQVSQELSEAILTMVTNAALMINKARQAPPGVVGPGPKSMPTIPPQPSNPLDTLADS
NPLGIPKSWTMSAVGNSGFPQGLAAPLTSTTTPGSPAKPGFQPISQPSSVGGLQGISSQL
QSLAIQNPPRNPGISTLVGQGMLKPSPPQGAPPQPQPTPPTLGQQPSMGPQAVVRPVGQT
TGDISSIFPDIQQQFSKEVEDEANSYFQRIYNQPPTPTMSIDEVLDMLKRFKDSPDKKEK
DVYECMLRNLFEEYRFFPQYPERELHTTAVLFGGIIEKGLATYMALGIALRYVLEALKKQ
HNSKMYFFGIAALDRFKTRLKDYPQYCQHLAAIPHFHQFPQHLIEYVKYGALSQEPPQQP
VSSRSITPTVGGLGLTGLQTGPMGMMPQPGTPTPSITGSSQEGVPTTTVSTPIPSSQPAA
KNLPKPSIASATNIDTLLAGQGKEEFSVPPETVQDKVFFIFNNLSLANLAQKTEELKKEV
TEEYLPWAAQYLVMKRASIEPNFHTLYANFVDALNHPKLTTLVTKETFRNIRVLLRSDKG
DANFSDRTLLKNLGHWLGMLTLAKNKPILQIDIDLKGLLYEAYHKSSRELLYVVPFTAKV
LESCAKSKVFKPPNPWTMAIMNALAELHQEPDLKLNLKFEIEVLCKTLNIDLGELKPGNY
LKDTIRLQTHEPQLSSVKPAAVIPPPVVTPQPDPSLILTASTPTVTTTTTVTTTTTAPSS
GTPNLPPRPQFAYEDINTNNFATLANQILISGQVALLQTHPQLKPLVKMAVEKSVQELMP
PVVERTNKITLTTCEQIIKKDFALDPEETRMRAAAHHMIRNMTSALALITSREPLYHSIA
SNLRTAFMSALRLTTETASARDKDAIEQAATVLATDNAELACVFIQKTAVERAIPEMDKR
LATEYEFRKHARNEGRRYCDPGVLTYQAERMPEQIRLKVGGVTPAQISVYEEFAHNIPGF
LPTNETPQAHPGVTKPVPVQPDEISQMLEKIGRDIDQVLQNFMFPPNNPLGNQLHKVLDA
VMYARNSRDMGSIETLLQKTINGLMELYTNNTTEQDLMSRFRDCHILVLKCLHDPRAYGP
AWLKKQVTRALVERSDDHKYNLEALDCLIRSQLVNMQQFDVYLVQLMENGINYMAVAFAM
QLIQRYCISDKHNSILTEADFANTIDALNAISNRSINPPDGLQALLDNLRSTPSGGSSSS
TTTGSALINSDFVFMDQTAALKAASGMMHTGIIQARDIDGDPPGLHEKAEYLLREWVNMY
HSPAAGRDSTKAFTAFVQQMHQQGILKNDDVITRFFRLCSEMCVDLCYRAMGEATGTPPT
NQALIRAKCFYTLDAFVRLIALLIKHSGDNANTVTKINLLNKVLGIVAGVLLQDHIVRMT
EFQQLPYHRIFIMLFIELNAPEHILENINYQVLTAFCNTFHVLRPAKSPGFSYAWLEFIS
HRVFIGRMLALTPQQKGWGMYAQLLIDLFKFLAPFLRNADLTKPTQMLYKGTLRVLLVLL
HDFPEFLCDYHYGFCDVIPPNCVQMRNLILSAFPRNMRLPDPFTPNLKVDMLTDISLPPR
ILINFASKIQPAQFKKDLDSYLKSRSPVTFVSDLRSYLQSSEPGTRYNIQLMNALVLYVG
TQAIQFIHSKSLTPSMSTIAHSAHMDIFQNLAVALDTEGRYLFLTAIANQLRYPNSHTHY
FSCTLLYLFAEANTEAIQEQITRVLLERLIVNRPHPWGLLITFIELIKNPQFKFWNHEFV
HCAPEIEKLFESVARSCMQPKQNQQASTGLRESDSNEMH
NT seq
7320 nt
NT seq
+upstream
nt +downstream
nt
atgaatctagactctttatcatttgctttggctgaaataagttattcagtggccaatcta
acgaagaaaaattttaagtctagtgtcgctgaaataagtcatcttgttagtcaacacggt
gcagaggcagatcgacacttgtttcgctgccttttttctcatgtagactttagtggtgat
ggtagaagcagtggaaaggattttcatcagacacagtttttgatacaagaatttggaaat
ctacttgggaaaccaaattttgtatcaaccctgtgttacgctattgacaatcctctacat
catcaaaagagtctgaaaccatcatcacagctctttactcaagtcagtcgtgtactgaag
ctaacacgggttcaagaggtcgtgtttggattagctctccttaattcatccaactctgaa
accaggaactattctgcccagtttgttaagcaaaagttgcctgatctcatcaagtcctat
gttgatgcagagagtagtttaaaacaagaaggagggttacaggacgttccaatagaagta
attcatcttttgttatcaagcatttttaaatgtaaagacaactttggaatagcaacagag
cagaaagaaattttcatcaaaaccctcaagaaagattttccatttgaaggagtccctgtg
atattgggaccattgttgtacgccgaagcagaagaactatctgtggaaaagttagcagat
acatcagccatgcctaaaacagcattggaagcgtccttagctgacatgattttggaggcg
ggttatggctgcacttcaagtgtcgaagaatgccgaagcaatttattgcagtttggagta
agggaaattactccctcctcagttgcgaaggtcttgggtatgatggcaagaaaccctgca
ggcttagatgttcaaaacacacaacagacaaacatggcctcaggaacaggatggggagat
atgggggataagggagacaagccaggatacaacacatggaatgttgatgtctttgtcaca
gtcattcaagatctggctcatcatttaaactggcgagaggtagtggcagagctcgaccac
ccaaatttccttgtgttgaacaagaaggggctgcgcattctcctgcagggccttaagcga
gggttacaggacatgttccctgttgattacatctatagaccatggaaaaacactgaagga
cagttgtctttcattgtacattctctgaggaacccagatgtcttttgctttgctgattat
ccttgtcatacagttgtgatagacatactgaaatctgctccagatgatgacaaccgagaa
attgtcacatggaaatccttggccttagtagagaccttgttaagactgtctgactcaggg
cactaccagactgtttcagaactgtttaagatccctatacagaattgtccagatatgttg
gtgttggcgttacttcagattacgcccacctggaacacactgaaacaggagctgatctcc
accttgatgcccatcttcctggggaaccacgctaactcggcagtggtgctacactatgcc
tggcattgtcagggtcactccagcaccatcaggaccctcatcatgcattccatggcagag
tggtacatgcgaggcgaacagcatgatcaaattcggttatcaagaatattggatgttgct
caggacttaaaggcattatcaatgttgctgaatgctaccccatttgcctttgtgattgac
ctggcttgtttggcatccagaagggaatatctaaagctagacaagtggctatctgacaaa
ataagagaacatggagagccatttatccagacctgtgtgaattttctgaagcggcgatgt
cctcagttgatggggggcatgtcaaaggatgagaaccagcctcagatgaagagccagatg
ttgcccacggaaaccatagccaccatgctgtcctgtttgcagcaatgtgcaaggattagt
agtctcagaagtcaagtgtcccaggaattgtcagaagccatattgacaatggtaaccaat
gccgctctcatgataaacaaagcaagacaggctccccctggggtagtgggaccgggaccc
aagtcaatgcccaccatccccccacagcccagcaatccgttggacactcttgcagacagc
aatcctctgggtatccccaagtcatggacaatgagcgctgtaggtaattcagggttccct
caggggttggctgcacccctgacttccaccacaacccctgggtctccagccaagccagga
tttcaaccgatctcacagccttcatcagttggagggctccagggaatcagctcacagctt
cagagcctggccattcagaatccccccagaaatcctggaatcagcacactggtcggacag
ggcatgttgaaaccttcccctccccagggagcaccccctcagcctcagcccacacctccc
accctgggccaacaaccgtcaatgggaccccaggccgttgtcagaccagttggccagact
acaggagacatctccagcattttccctgacattcagcaacagttctccaaggaggtggaa
gatgaggctaattcttacttccagaggatctacaatcagccaccaacaccgactatgtcc
attgatgaagtgctagacatgctcaagaggttcaaagattcaccggacaaaaaagaaaag
gatgtttatgagtgtatgctgcggaacttgtttgaagagtaccgatttttccctcagtac
ccagagagagagttacacactacagcagtattgtttggaggaatcattgaaaaaggatta
gcaacgtatatggcattgggaattgccttgaggtatgtcttggaggctttgaaaaagcag
cacaattccaagatgtatttctttggaattgcagcattggaccgatttaaaacaagatta
aaggactacccccagtattgtcagcacctggcagctattcctcattttcaccagtttcca
cagcatctcattgagtatgtgaagtatggagctctgtctcaagaaccccctcaacagccg
gtgtcctcccgcagtattaccccgacagtagggggactgggcctcacgggactgcagaca
ggaccgatgggaatgatgcctcagccgggaactcccactcccagcattacagggtctagt
caagagggggtccccaccaccacagtctccacccctataccttcgtcacagcctgctgcc
aaaaatctaccaaagccctccattgctagtgctacaaacatagatactttgttagctggc
caaggaaaggaggagttttctgtgcccccagagacggttcaggacaaagtgtttttcatc
ttcaacaacctctctctagccaatttggctcagaagactgaagaattgaagaaggaagtt
acagaggaatatttaccatgggctgcccagtatcttgtgatgaagagagccagcattgag
cctaatttccacacactgtatgccaactttgtggatgctctaaatcaccccaaacttaca
acactggtcactaaggaaacatttagaaatatcagggtattactgagaagtgataaaggt
gatgctaacttctctgacagaaccctgctcaaaaacctcggtcattggctcggaatgtta
accttggctaaaaacaaaccaatcttacaaatagatatagatctgaaaggtttgttgtat
gaggcttaccacaaaagctccagggaactactttatgtggtcccttttactgccaaggtt
ctggagtcctgtgctaaaagcaaggttttcaaaccacctaatccatggaccatggctatc
atgaatgctctggcagaactacaccaggaacctgacctcaaactcaacttaaaatttgaa
atagaagtgctatgtaaaactctgaatattgacttaggggaactgaaacctggcaattac
ttgaaagacaccattagactacagacccatgaaccacagttgtcgtctgtgaagccagcg
gctgtgataccgccacctgtggtcaccccccagcctgatccgtccctgatactgaccgca
tcaactccgacggtcaccactaccaccactgtcaccacgacaaccacagccccctccagc
ggcacccccaacctgccaccaaggccacagtttgcatacgaggacatcaacaccaacaac
tttgccactttggctaatcagatcctgataagtggacaggtggctctgctacagactcac
ccacaattgaagcctctggtgaagatggcagtggagaaatccgtgcaggaactgatgcct
cctgtggtagaaagaacaaacaaaatcactctcaccacttgtgaacaaataatcaaaaag
gactttgcattggaccctgaggagaccagaatgagggcagcagctcatcacatgatcaga
aacatgacctctgccctggcactgataacgtcccgggagcccctgtaccacagcattgct
tccaatcttaggacagctttcatgagtgcgctcagacttacaacagagacagcaagtgct
agggataaagatgcaatagaacaagcagccacagtattagctactgataatgctgagtta
gcatgtgtctttatccaaaaaacagctgttgagagagctattccagaaatggacaagagg
ctggcaacagaatatgaattccgtaagcatgctcgaaatgagggaaggcgttactgtgat
cctggagtacttacataccaagcggagagaatgcctgaacagatcagattaaaggtggga
ggagtcacacctgctcagatctctgtatatgaagaatttgctcacaacatcccaggattc
ttaccaacaaatgaaacacctcaagcacaccctggagttaccaaacctgtgcctgttcag
ccagatgaaatttcccagatgttagagaagataggaagagatatagatcaagtgctacag
aacttcatgttccctcctaacaatcccctcggcaatcagctgcacaaagtgctagatgct
gtgatgtatgccagaaacagcagggacatgggatccattgaaaccttgctacagaagacg
attaacggactgatggagctgtacaccaacaacaccacggagcaggatctgatgagcagg
ttccgtgactgccacatcctggtcctaaagtgcttacatgacccaagggcgtacggtcca
gcctggctaaagaagcaggtgacgcgagccctggtggagcgcagtgacgaccacaagtat
aacctggaggccctagactgtcttatccgcagccagctggtcaacatgcagcagtttgat
gtgtacttggttcagctgatggaaaacggcatcaactacatggcagtagcttttgctatg
cagttaattcaaagatactgcatcagcgacaaacataattctattctgacagaggctgat
tttgccaatactatcgatgctctgaatgccatctccaacagatctatcaatccgcctgat
gggctgcaagcattacttgacaacttacgtagcacccctagtggaggcagcagcagcagc
accaccactggaagtgcccttatcaactctgattttgtcttcatggatcagacagcagct
ctgaaagctgcctctggtatgatgcacactggaattatccaggccagagacattgatggg
gaccccccaggtctccacgagaaggcggagtacctcctcagagagtgggttaacatgtac
cactcccccgccgctggaagagacagcacaaaggctttcactgcatttgttcaacagatg
catcagcagggtatactgaaaaacgatgatgtgataacacgcttcttccgcctctgctct
gagatgtgtgtggacctgtgctatcgggccatgggagaggccacaggaacacccccaacc
aatcaggccctgatcagggccaagtgtttctacacactggatgcctttgtccgtcttatt
gcccttctgattaaacactcgggggacaatgcaaacactgtaacaaagattaatcttctc
aacaaggtcctgggaattgtggctggggttttgctgcaggatcacattgtgagaatgaca
gagtttcagcagcttccttatcacaggattttcatcatgctcttcattgagctgaatgca
ccggaacatatcttagagaacatcaattaccaggtcctcacagctttctgcaacacgttc
catgtgttgagacctgccaaatcacctggattttcctacgcatggttggagtttatatct
caccgggttttcattggcagaatgttagctctgacccctcagcaaaagggatggggaatg
tatgcccagttgttgattgatttgttcaaatttctggcacctttcttgaggaatgccgat
ctcacaaaaccaactcagatgctgtataagggaacactgcgagttttactggtcctgctc
catgacttcccagagttcctctgtgattaccattatggattctgtgatgtcatcccacct
aattgtgttcagatgcgtaacttgatactgagtgctttccctcgtaacatgaggcttcct
gatccatttacaccaaacctcaaggttgacatgttgacagacatttcactcccaccccgc
attcttatcaactttgcaagcaagatacagcctgctcagttcaagaaggatttggattca
tacttgaaatcgaggtctcccgtaacatttgtatcagacttgagaagttacttgcagtcc
agtgagccagggacccggtacaacattcagctgatgaatgccttggtcctgtacgtgggg
acacaggcaatacagttcatccatagcaagagtctaactcctagcatgagcaccatcgct
cactcagcccatatggacattttccagaatcttgcagtggctttagataccgaaggtcgt
tacttgttcttgactgccatagctaatcagctgagataccccaacagtcacacccattat
ttcagctgtacactgctgtatttgtttgctgaagctaatacagaggccatccaagaacag
ataacaagggttctgttggagagactgatagtaaacagacctcacccctgggggctcctc
atcaccttcattgagcttatcaagaacccccagttcaagttctggaatcatgagtttgtg
cactgtgcaccagagatagagaaattgtttgaatcagttgccagatcctgtatgcaacct
aaacaaaatcagcaagcttctaccggtttacgagaatccgattccaatgaaatgcactag
DBGET
integrated database retrieval system
