Crassostrea gigas (Pacific oyster): 105332999
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Entry
105332999 CDS
T03920
Name
(RefSeq) long-chain-fatty-acid--CoA ligase 1 isoform X1
KO
K01897
long-chain acyl-CoA synthetase [EC:
6.2.1.3
]
Organism
crg
Crassostrea gigas (Pacific oyster)
Pathway
crg00061
Fatty acid biosynthesis
crg00071
Fatty acid degradation
crg01100
Metabolic pathways
crg01212
Fatty acid metabolism
crg04146
Peroxisome
Module
crg_M00086
beta-Oxidation, acyl-CoA synthesis
Brite
KEGG Orthology (KO) [BR:
crg00001
]
09100 Metabolism
09103 Lipid metabolism
00061 Fatty acid biosynthesis
105332999
00071 Fatty acid degradation
105332999
09140 Cellular Processes
09141 Transport and catabolism
04146 Peroxisome
105332999
09180 Brite Hierarchies
09181 Protein families: metabolism
01004 Lipid biosynthesis proteins [BR:
crg01004
]
105332999
09183 Protein families: signaling and cellular processes
04147 Exosome [BR:
crg04147
]
105332999
Enzymes [BR:
crg01000
]
6. Ligases
6.2 Forming carbon-sulfur bonds
6.2.1 Acid-thiol ligases
6.2.1.3 long-chain-fatty-acid---CoA ligase
105332999
Lipid biosynthesis proteins [BR:
crg01004
]
Acyl-CoA synthetase
Long/very long chain acyl-CoA synthetase
105332999
Exosome [BR:
crg04147
]
Exosomal proteins
Exosomal proteins of breast milk
105332999
Exosomal proteins of breast cancer cells
105332999
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
AMP-binding
AMP-binding_C
PNTB_4TM
Motif
Other DBs
NCBI-GeneID:
105332999
NCBI-ProteinID:
XP_011434072
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All DBs
Position
LG10:22411877..22436164
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AA seq
705 aa
AA seq
DB search
MSATSLIQGVSVAGMVMIEKIRNMDYLKLLGAGAVTLAAVTTTTFYYLTSRPQPIPLLCD
LNDQTQEKDKNERSRMSKLCKNGKYLCEYEDGEVKTLYDAFKRGARVSNNGEAYGWKPSP
SEPFQWISYNDVLVRAANVGAGLIAKGLKPENTTNVGIYSQNRVEYGITEQACYMYSMVL
VPLYDTLGPEACTHIINQAEIKTVVCDKNVKVKAILNRIKETPDLESIILVEEPSEEMKE
LVQKHNIDLTSFAELEALGEKNPQEPKPAKPDDLCVLCYTSGTTGLPKGAMLTHRGTMAT
VVAAGAVLKPGGIDISPEDTLISYLPLAHSYERLLECYCVLNGARIGFFQGDVKLLLDDI
KELQPTLFPSVPRLLNRIYDKVMSQINSGSGIKKKLFNMALASKENELKKSIIRNDSLWD
KIVFKKIQASLGGKVKLITTGSAPLSPKVLHFLRCCAGCPVVEGYGQTECHAVCSVTLVG
DPDTGNVGPPLPCCEIKLADVEEMNYYAKDNKGEVCIKGPNVFLGYYRDQAKTEEALDKD
GWLHTGDIGQWLENGTLKIIDRKKNIFKLAQGEYIAPEKIENVYVRSPLVAQVFIHGESL
KSSLVGVVVPDPEVLPGWAKTNLHVTQTMEELCANPDVKKQIMTDLTNIGKTGGLHSFEQ
VKDIFLYPEQFSVENGLLTPTFKAKRHELKLKFKSEIDEMYKNLV
NT seq
2118 nt
NT seq
+upstream
nt +downstream
nt
atgtctgcgacatctctgattcagggagtttcagtggcaggcatggtgatgatagagaaa
atacgaaatatggattacttgaagctactgggagctggtgctgtgactctagcggctgta
accactactacgttctattacctgacaagccgcccacaacccattccattgctctgtgat
ctgaatgaccaaacgcaagaaaaagataaaaatgaaagatcacgaatgtcaaagctctgt
aaaaatggaaagtacctctgtgaatatgaggatggtgaagtgaagactctgtacgatgct
ttcaaaaggggagcaagagtatcaaataatggagaggcctacggatggaaacccagcccc
tcagaaccattccagtggatctcctacaatgatgtcttagttcgagctgccaatgttggt
gctggtcttatagctaaaggactcaagccagaaaacacaacaaatgtcggcatttattcc
caaaacagggtcgagtatgggatcacagaacaagcctgctatatgtattccatggtcctt
gtgccgctgtatgacacattgggaccagaggcgtgcacacacatcatcaaccaagctgag
attaagactgtggtctgtgataagaatgtgaaggtcaaggccatactgaatcgaatcaag
gagactcccgacctagagagcataatcctggtggaggaaccttccgaggagatgaaggag
ctggtacaaaaacacaacattgacctcacatcctttgccgagttagaggcacttggtgag
aagaatccacaagaaccaaaacctgccaagccagatgatttgtgtgttctgtgctacacc
agtgggaccacaggtttaccaaaaggtgccatgttgacacacagaggaacaatggctact
gttgtggcagctggggctgtgctgaaacctggtggcatagacatctctccagaagacaca
cttatatcatatcttccactcgctcattcatacgaaaggttactcgagtgctactgtgtg
ttgaacggagccagaattgggtttttccaaggagacgtgaagttattgttggatgatatt
aaggagttacagcccaccctcttcccttctgtaccaaggttactcaacagaatctatgac
aaggttatgagtcaaataaattcaggatcaggaataaaaaagaagctgtttaatatggct
ttagccagcaaggaaaatgaactgaaaaagagtataattagaaatgatagcctatgggac
aaaattgtattcaagaagattcaggccagcctcgggggaaaagtgaagctcatcacaaca
ggatctgctcctctgtcccccaaagtacttcatttcttgaggtgctgcgcaggatgtcct
gttgtggagggatatggacagactgaatgccacgctgtctgctccgtgactttagttgga
gatcctgatacaggaaatgttggcccaccactgccatgttgtgagatcaaactggctgat
gtggaggagatgaattactatgcaaaagacaacaaaggggaggtgtgtatcaaaggaccc
aatgtgttcctgggttactacagagaccaagcgaagacggaggaggctctggataaagac
ggatggctccacactggagacatcggacagtggctggagaatggtactttgaagatcatt
gacagaaagaagaatattttcaaattagcacagggtgaatacattgctcctgagaagatt
gaaaatgtctacgtgagaagcccattagtggcacaagtcttcattcacggagaaagcttg
aaatcaagtttggtgggtgtggtggtacctgatcctgaagtgttacctggctgggctaag
acaaacctccatgtgacgcagacaatggaagaattgtgtgcaaacccagatgttaagaag
caaataatgacagatttaaccaacattggaaaaactggaggactccattcatttgaacag
gttaaagacatattcctatatccggaacagttttctgtggaaaatggacttctaacgcca
acattcaaagctaaaagacatgaattgaaactaaaattcaaatcagaaattgatgagatg
tacaaaaatctagtgtaa
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