Crassostrea gigas (Pacific oyster): 105333704
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Entry
105333704 CDS
T03920
Name
(RefSeq) DNA-directed RNA polymerase I subunit RPA1
KO
K02999
DNA-directed RNA polymerase I subunit RPA1 [EC:
2.7.7.6
]
Organism
crg
Crassostrea gigas (Pacific oyster)
Pathway
crg03020
RNA polymerase
Brite
KEGG Orthology (KO) [BR:
crg00001
]
09120 Genetic Information Processing
09121 Transcription
03020 RNA polymerase
105333704
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
crg03021
]
105333704
Enzymes [BR:
crg01000
]
2. Transferases
2.7 Transferring phosphorus-containing groups
2.7.7 Nucleotidyltransferases
2.7.7.6 DNA-directed RNA polymerase
105333704
Transcription machinery [BR:
crg03021
]
Eukaryotic type
RNA polymerase I system
RNA polymerase I
Core subunits
105333704
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RNA_pol_Rpb1_5
RNA_pol_Rpb1_2
RNA_pol_Rpb1_3
RNA_pol_Rpb1_1
RNA_pol_Rpb1_4
Motif
Other DBs
NCBI-GeneID:
105333704
NCBI-ProteinID:
XP_011435124
LinkDB
All DBs
Position
LG10:complement(35323764..35350769)
Genome browser
AA seq
1671 aa
AA seq
DB search
MEARVPRHVLRGISFNSYNSSEILELSVKEITNPQTFDGLLHPTLGGLYDPKLGPTEKDD
KCQTCGMGQGGCPGHLGHITLPLPTYNPFFFSVLYQLLKGTCFDCHRLAVHSLKSAVLVQ
KFRLLEHGLISSVADVDEFATHFTSEYGNDAEEKILEQLNEMVLSKINNTIEQDFHIKNV
EACKNNTRRAFIHEHFTVKGKCVHCRTKRMPLRKVQNAKIMLSTVTSSRTKKSTKTKQVK
EKKENDADDDEEDDDGEGEEEDDLESGTQIYLTSADVRDHLRQVWQKDQQVLKCLFHFLS
GSSADYPTDSFFIDVVPVPPSRFRPVSSLRDKKFENPQTQTLCNVLKGAALIRKILSLKS
TQENGKEITEIEPTAITEIPGKTLNEKLQNALVKLQVVMNCIVDGDSDKLAVDKITGVKQ
ILEKKEGLFRKNMMGKRVNFAARSVISPDPCISTCEIGIPEVFAKKLTFPQPVTPWNVHE
LRQAVINGPDTYPGASLIDMPDGSKVILNKKEKVQREAIAKQLLTPSPDPHQQNTCKVVH
RHLKNGDVLLINRQPTLHRPSIQAHKARVLPGEKTLRLHYANCKAYNADFDGDEMNAHFP
QTQLGRAEAYTIACTDYQYLVPKDGTPLAGLIQDHMVSGVSLTIRGRFFTRNDYCQLVYM
ALVDKRGPINLLPPALIKPKTLWSGKQVLSTLLHNIIPKGRQMFNLTGKSKIPEKSWIHQ
QVRLASLDNMGESHVVIRGSELLCGVLDKGHYGNTPYGLVHCCYELYGGEVAGTLLSCLG
RLFMNFLQQHRSFSLGVEDILVTPKADQRRKKAMHKSGKCGDEVVTQALGLEEGTEGQEL
REAMMDAQFDQNDRRLRELDLCMKGKTDDTQNAIVGACMPKGLEKLFPANNLQLMVQSGA
KGSSVNCMQISGLLGQIELEGRRPPLMLSGKTLPSFLAYDSSPRAGGFVAGRFLTGIRPQ
EYFFHCMAGREGLIDTAVKTSRSGYLQRCLIKHLEGIIVNYDMTVRDSDGSIVQFYYGED
GLDISKTGFLSPKQFPFLTDNSETGSKGNAFDKKVAKRMKKIKKWNKSNKWRSKRCSAFL
EFSKEFAEEHDLDNRTLEKTGRSKGTTETIRSWQELEEAQKERYIKHDINAPDPVTGVFR
PFQYKGVLPESFLQKIQDFSKYELTKLPTSISEKGFLKLLCDKAESSYCQPGEAVGLLCA
QSIGEPSTQMTLNTFHFAGRGEMNVTLGIPRLVEILMVASDKIKTPSMEVPILAHCQDKA
KKLQMKFNKVILSEVLEKVTVNEFLSVSNVSKSQRSRNFKLRFHFLKPKFYTDRLDVTPS
SILHYMEKTYIKNLLTKIKKKISDFQLAKMVNSGHIRPVLVTHTRPAAADEDDADEDLSD
MEENDNTASDVKARQKKQEEQEYEEKEEEKEVLEEEENVEMDDNDDEEDEEDKDSEEDDT
LTSSVDRETSEHRIQFVVLSSSNIADYKYDIKRELWCEFTLQFGLLNSKIDLTSLIEEHA
KETVVHCVPGINRCLLKEVKSQQGPELHICTEGINILEIFLYADILDLNRLYSNDIHAIA
NMYGIEAANKVIIKEIKNVFAAYGIEVDYRHLSLLADYMTFEGTYKAFNRRAIETCASCL
QQMSFETTMSFLVKASLQGAYDNLKSPSSQIVAGKPISCGSGAFELLYKLF
NT seq
5016 nt
NT seq
+upstream
nt +downstream
nt
atggaggctagggtaccaagacatgttttgcgaggaattagttttaattcctacaactcc
agtgaaattttggagctcagtgtaaaagaaataaccaacccccagacttttgatggtctg
ttacaccctacactaggtggcttgtatgatccaaaactaggtccaactgaaaaagatgac
aaatgccagacctgtggcatgggacagggaggatgccctggacacttgggtcacatcacc
ttaccattacctacatacaatccgttcttcttcagtgttttatatcagctcttgaaagga
acctgttttgattgtcaccgattagctgttcattccctaaagtcagcagtgcttgtgcag
aagtttagactcttagaacatggacttatttcatctgtggcagatgtggatgaatttgct
acacatttcacatccgaatatggcaatgatgccgaagaaaaaatactagaacagctcaat
gaaatggttctatccaaaatcaacaataccatagagcaagattttcacatcaaaaatgtt
gaagcatgcaaaaacaacacaaggagggcatttattcacgaacattttacagtgaaagga
aagtgtgttcattgtaggactaaacgaatgcctttgaggaaagttcagaatgccaagata
atgttatccacagtcacttcctcaagaacaaaaaagtccactaaaactaaacaagtgaaa
gaaaaaaaagaaaatgatgcagatgatgatgaagaagatgatgatggtgaaggagaggag
gaggatgacttggagtcaggtacacagatttacctgacttctgcagatgtacgggatcac
ctgagacaggtgtggcagaaagatcagcaggtcctcaaatgtctgttccatttcctgtcc
gggagcagcgcagattatcccacagattctttctttattgacgttgtgcctgtaccaccc
tctagatttagaccagtatcatccctcagagataagaaatttgaaaaccctcagacacag
actctttgcaatgtgttgaaaggggcagctttaattcgtaaaattctgagtctaaaatca
acacaggaaaatggaaaggagataactgaaattgaaccgaccgctataacagaaatacct
gggaaaactctgaacgagaagctgcagaatgctttggtcaaactacaggttgtaatgaac
tgtattgtagacggagactcagacaagcttgctgttgacaaaattacaggtgttaaacag
attttggagaagaaagaagggttgtttaggaagaatatgatgggaaagcgagtgaatttt
gcagcacgttctgtgatttcacctgatccttgtattagtacatgtgagatagggattcct
gaagtgttcgccaagaaactgacctttccacagccggtaactccatggaatgtccatgag
ttaagacaggcagttatcaatggtccagacacctacccaggggcctcattaatagacatg
cctgatggtagcaaagtgattttgaataaaaaagaaaaagttcaaagagaggctattgct
aagcaactgttgactccttcaccggatcctcatcaacaaaatacctgtaaagtggttcat
cgtcatctgaagaatggagatgttttacttataaatcgacagccaacactgcatagacct
agtattcaggctcacaaagcgagagttctgccaggggagaaaactctgcgcttacactat
gctaattgtaaggcatacaatgcagactttgatggagatgaaatgaatgctcacttccct
caaacacaacttggaagggcagaggcatatactattgcttgtacagattaccaatatctt
gtgcccaaggatggtacacctttggcaggtttgattcaggatcacatggtctcaggtgtg
tcattaaccatacgaggcagattcttcaccagaaatgactattgtcaactggtatacatg
gcattggtggacaagcgaggaccaatcaatttgctgcctccagccctgatcaaacccaaa
actctctggtcaggaaaacaggttttatcaaccttgcttcacaacattattccaaaaggc
agacaaatgttcaatctcacaggaaaatcaaaaatcccagaaaagagttggatccatcag
caggtgagacttgccagtctggacaacatgggggagagtcatgtggtgatccgggggtca
gagctgctctgtggggtcctggacaagggtcactatggcaacacaccgtacggactggtc
cactgctgttatgagctctatggtggagaagtggcaggaactctcttgtcctgtttgggc
agactcttcatgaactttctgcagcaacacaggagtttctccctgggagtggaggacatc
ttggtcaccccaaaagctgaccagaggaggaagaaggccatgcacaagtcagggaagtgt
ggggatgaggtggtgacccaggcgctgggtctggaggaggggacagaggggcaggaactc
cgggaggctatgatggatgcccagtttgaccagaatgaccgccgactgagagaactggat
ctgtgtatgaagggaaagactgatgatacgcagaatgccatagtcggcgcctgtatgcca
aagggtttagagaagcttttccctgccaacaacctccaattgatggtgcagtctggtgct
aaggggtcgtctgtgaattgtatgcagatttctggcttgcttggccagattgagttggag
ggccgacgcccccctctcatgctgagtgggaagactttaccctccttcctagcttacgat
tcctccccacgggcagggggctttgtagctggcaggtttttgaccggaattcgaccccag
gaatatttcttccattgtatggcagggagagagggtctgatcgacacagctgtaaagacc
agtagaagtggttatctccagcgctgtctgatcaaacatctggagggaatcatcgtcaac
tatgacatgactgtccgggacagtgatggcagtattgtacagttttactatggtgaggat
ggattagatatttccaagactggcttcctatcaccaaagcagtttcccttcctgactgac
aacagtgagacaggcagtaagggtaatgcctttgacaagaaagtcgccaagaggatgaag
aagataaaaaagtggaataaatctaacaaatggagaagcaagaggtgctcggcattcctg
gaattttccaaagagtttgcggaggaacatgacctagataacaggacgttggagaagact
gggaggagtaaggggaccacagagaccatcagaagctggcaggagctagaggaggcccag
aaagaaagatacattaagcatgacatcaatgcccctgacccggtcactggggtgttccga
cctttccagtataaaggagtactcccggaaagcttcctacagaaaatccaggacttcagt
aaatatgaactgaccaagcttcccacatcaatatcagagaaaggcttcctgaagctgctg
tgtgataaagcagagagctcttattgtcagcctggggaagcagttggacttctttgtgct
cagtccattggagaaccatctacacagatgaccttgaacacctttcattttgcgggtcga
ggagaaatgaacgttaccctgggtattcctcgtcttgtggaaatcttgatggtggcatcg
gataaaataaagaccccttcaatggaagttcccatcttggctcattgtcaagataaggcc
aagaaactacagatgaagtttaacaaagtgatcttgtcagaggtgttagaaaaagtgacg
gtgaatgagttcctttctgtcagtaatgtcagtaaaagtcaacgatcgcgaaacttcaaa
cttcgatttcacttcctgaaacctaagttttatacagacagactcgatgtcactccatca
tctatcctgcattacatggagaagacttacattaaaaatttgctgaccaaaatcaaaaag
aaaattagtgacttccagttagcaaaaatggttaatagtggtcatataaggcctgtcctg
gtcacccacacaagaccggcagcggcggatgaagatgatgcagatgaggatttatcagac
atggaggagaatgacaacacagcctcagatgtcaaggccagacagaagaaacaggaggag
caggagtacgaggagaaggaggaggagaaagaggtcctcgaagaggaagaaaatgtagaa
atggatgataacgatgacgaagaggatgaggaggacaaggattcagaggaagatgacaca
ctgacatcatcagtagacagggagacctccgagcaccggatacagtttgttgtgctgtcc
agttccaacattgctgattataaatatgacataaagagagagctttggtgtgaattcaca
ctacagtttggtttgctgaacagtaagatagaccttacctctctaattgaggaacatgcg
aaagaaacagtagtccactgtgttcctggaataaacaggtgccttctcaaagaggtgaaa
agtcaacaaggcccagaactccacatctgtacagagggaatcaatattttggaaatcttt
ttgtatgctgatattctggatttaaatcgcttgtattcgaatgacattcatgccattgca
aatatgtatggaattgaagcagcaaataaagttattataaaggaaatcaagaatgtgttt
gcagcttatggtatagaagttgactacagacatctttctctgctggcggattatatgaca
tttgaggggacatacaaagctttcaacagaagagctatagagacatgtgcttcgtgctta
cagcaaatgagttttgagacgaccatgagtttccttgtgaaagccagtttacagggggcc
tatgacaatctaaagtccccctcctcccagattgtggctggcaaacctatctcttgtggc
tctggggcttttgaactcctttataaactcttttag
DBGET
integrated database retrieval system
