Crassostrea gigas (Pacific oyster): 105341799
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Entry
105341799 CDS
T03920
Name
(RefSeq) antiviral innate immune response receptor RIG-I
KO
K12646
ATP-dependent RNA helicase DDX58 [EC:
5.6.2.6
]
Organism
crg
Crassostrea gigas (Pacific oyster)
Brite
KEGG Orthology (KO) [BR:
crg00001
]
09180 Brite Hierarchies
09183 Protein families: signaling and cellular processes
04054 Pattern recognition receptors [BR:
crg04054
]
105341799
Enzymes [BR:
crg01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.6 RNA 3'-5' helicase
105341799
Pattern recognition receptors [BR:
crg04054
]
Cytoplasmic pattern recognition receptors
RIG-I-like receptors
105341799
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
ResIII
DEAD
RIG-I_C
SWI2_SNF2
AAA_19
IstB_IS21
UvrD-helicase
nSTAND3
Kinesin
PhoH
AAA_11
AAA_22
DUF87
AAA_30
T2SSE
Motif
Other DBs
NCBI-GeneID:
105341799
NCBI-ProteinID:
XP_034314892
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All DBs
Position
LG1:42267624..42273471
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AA seq
500 aa
AA seq
DB search
MEQPPSISLYERTEDDTSALGDGIAKLSLDQIDDHPTEVSLFDEEEEEEKVSESKTSKYA
YSENANLAEENDLLKKQKKKHVDPKKFELRPYQQELAERALRGDNCVIIAPTGSGKTHVA
IRIIQHHLEKLERGKKIVFIVDKNNLANQQSERIEEYLKCRLKVISGDIQREVECVQDWD
SLLPHYDVFVSTAQMLLNAINDPEQNVCLESFCLIIFDECHHCGRKHPFQRIVDKYVDTR
LDRNGDKSRLPQVVGFTASLGVGKVNALDNAVEHLKTFLAIMDADCLVTVQRNKQDLATH
VNNPKQYIVSVPGRRIDDFGTRIKILMSRTEDYLVYTGVGTVDRIAIRPPSIKGDIQYTS
WLEGTLRKAQAKLQDPDMARTLFTIRQLLEIYNNALIHYTHARAIDALNFIKDEVEKFPN
ISKYTEIERKVKSVLEDEYMTLEASALDHGRTSENPLLEKLKEIIISTYAEEPNMRAIVF
VRTRIMTECLVNWMEDTEEL
NT seq
1503 nt
NT seq
+upstream
nt +downstream
nt
atggaacaacctccgagtatttcattgtacgagaggacggaggacgacacaagtgcttta
ggagatggcatagctaagctatctctagaccagatagacgatcaccccacagaagtatct
ttatttgatgaggaggaagaagaggagaaagtatcggaatcaaaaacgagtaaatacgcc
tattccgagaacgcaaaccttgctgaagaaaacgatttgcttaagaagcaaaagaaaaaa
catgtggaccctaagaaatttgaactacggccatatcaacaagagttagcagagagggcc
ttaaggggagataactgtgttatcatagctccaacaggaagtggcaaaacacatgtcgca
ataagaataatccaacatcacttagaaaaacttgagcgagggaagaaaatagtatttatc
gtcgacaaaaacaacctggccaatcaacagtcagagaggatagaggaatatctaaaatgc
agattgaaagtgatatccggggacatccagagagaagtggaatgtgtacaggactgggac
tcgctattacctcactacgatgttttcgtgtccactgcacaaatgttgctgaacgctatt
aacgatcctgaacagaatgtctgtctggagtcgttctgtctgattatcttcgacgaatgc
caccactgcggcaggaaacatccatttcaacggatcgtggataaatacgtggacaccaga
ctggatcggaacggtgataaaagtcggctcccacaggtcgttgggttcacagcctcgctc
ggagtgggaaaggttaatgctctagacaatgcagtggaacacctcaagacgttcttagcc
atcatggacgctgattgcttagtaacggtgcagagaaataaacaggacttagcaacgcat
gtaaacaacccaaaacaatacatcgttagtgttcctggtcgacggattgacgattttgga
acccggattaaaatactgatgagcagaactgaagactatttggtatacactggagttgga
acggttgacagaattgccattagacctccatctatcaaaggtgatatacagtataccagt
tggttggaaggtacacttcgaaaagcacaggccaaacttcaggatccagatatggccagg
acactgtttaccatcagacaattattagagatttacaacaatgctcttatccactatacc
cacgccagagcaatagatgcgctaaattttatcaaagatgaggtagaaaaattcccaaat
atatccaagtatacagagattgaaagaaaagttaaatcagtattagaggatgagtacatg
acattggaagcatctgcactggatcacggaagaacttcagaaaacccacttcttgaaaaa
ttgaaagagatcatcatttcaacatacgcggaggagcccaacatgagggcgatagtgttc
gtgaggactcggataatgaccgagtgtttggtgaactggatggaggacaccgaggaatta
tag
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integrated database retrieval system
