Chroicocephalus ridibundus (black-headed gull): 134510842
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Entry
134510842 CDS
T10910
Name
(RefSeq) LOW QUALITY PROTEIN: collagen alpha-4(VI) chain-like
KO
K06238
collagen type VI alpha
Organism
crid Chroicocephalus ridibundus (black-headed gull)
Pathway
crid04510
Focal adhesion
crid04512
ECM-receptor interaction
crid04518
Integrin signaling
crid04820
Cytoskeleton in muscle cells
Brite
KEGG Orthology (KO) [BR:
crid00001
]
09130 Environmental Information Processing
09133 Signaling molecules and interaction
04512 ECM-receptor interaction
134510842
04518 Integrin signaling
134510842
09140 Cellular Processes
09144 Cellular community - eukaryotes
04510 Focal adhesion
134510842
09142 Cell motility
04820 Cytoskeleton in muscle cells
134510842
09180 Brite Hierarchies
09183 Protein families: signaling and cellular processes
04147 Exosome [BR:
crid04147
]
134510842
00536 Glycosaminoglycan binding proteins [BR:
crid00536
]
134510842
Exosome [BR:
crid04147
]
Exosomal proteins
Exosomal proteins of other body fluids (saliva and urine)
134510842
Glycosaminoglycan binding proteins [BR:
crid00536
]
Heparan sulfate / Heparin
Extracellular matrix molecules
134510842
Hyaluronan
Extracellular matrix or blood plasma proteins
134510842
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
VWA
Collagen
VWA_2
Kunitz_BPTI
Motif
Other DBs
NCBI-GeneID:
134510842
NCBI-ProteinID:
XP_063180137
LinkDB
All DBs
Position
2:47130149..47172497
Genome browser
AA seq
1534 aa
AA seq
DB search
MVSGFDIGPHVVHGSSGVADLQFKNVQRLLKAVANDSVIGVNKVHFGVLVCRCKWEMNFS
LSSYSSESHSREAIFNLKPLPGQPFTARALSFSRQRLGVNXGGHASFRAVTRILTLTDEP
AVPLDRANLRMAVKALKGGEINLTAVGVKKASRAELEEITEGQERLLFGQSYDALPIKML
GNLLLGHSVCNSQVADLVFLVDGXSIXKSNFSVMKILMMEVVDSFVISREKVCVRVVQYS
QEKKYSLNEFCTDTMIKEQINRIEQLHSSAFAGKWLRLLRSFFQPASRGRKSQGVSQNLV
VITGXSAVRLEDAAMALRSDGSHVIAVGIRIINSFELLLIACDARRLFTVENLDAMKTLG
RSIVNQVCESKCLPSXDCNIDLSIAIDISRRMQPASTVLLKQKLQAFLPKLLLQMKLLPN
TSCNAGSPVNIRFKFQVLAQTREFIFDSDFEEYNEEIIQKFLDTQTTVDTYLNAEFLQAL
GEKFFNVTSANIKVLLVFSDGLDDSLEDLRKAADSLHFKGLDAFLLVGLDNTQNLTELRE
IEFGRGFGYNEPLSVGFAEIANILQRNLDTVAERKCCKVVCKCLGENGDPGGQGSPGRKG
STGYRGSPGHPGEEGGIGERGPVGFNGTQGDRGCPGARGHKGARGYRGSQGEHGESGFDG
TDGEQGDRGIPGPSGEKGNAGKQGRKGPRGEPGERGESGLRGDHGDPGTSNNVPGPKGEK
GNPAHQGDPGPHGLQGEQGDAGPYGAAGRRGPPGVKGEQGDLGEAGYPGDSGLPGPQGPR
GPQGIRGPPGPQGMPGPLASLGAPGAPGSVGKLGARGAKGEPGDPGEKGPVGPAGWRGMP
GVDGRDAYGPEGSKGAKGESGFTGYPGPEGEDGDPGIPGAEGPKGVRGRRGNAGIPGSLG
DPGDQGPSGPMGAKGPMGTVLMEPCELVNFTRKNCPCSSDTCPVYPTEVVFAFDMSDDVT
PAAFERMRNIVMLLLKTIKISESNCPTGARVSVVSFNTNTRYLIRFSEFQKSNLLLQAVQ
RIPLERTTGKRNIGAAMRFVSRNVFKRVRQGILTRKVALFFANGPSQDGVAINTAVLELS
ASDITPVVIAFSEVPNVRRAFSIDDTGRFQLFVWERQQDESLKNITYCTLCFDKCKPSTS
CVVPFSPPVLMDMDITYIMDSSRSISSEEFQRAKDFVSNMLDQFVISSQPNESYGGIRVA
LLQQAPRGFLPDRNQTPVALEFDLVTYSNKDLMKKHIQESVHQLEGPSAIASALQWAVEN
VFFKAPRQRKHRVVFAIIGSKTSTWDREKLREISLGAKCQGFTLFTLALGNDVSDNQLME
LSSSPTDQHLLALSRVSMSEMVYAQRFSRAFLNLLQQETNSYPSPELQEECENLDQGDTQ
QQASAIERMPFPGTGETGYGHGLEDIERTESGVWENIRETTTEPVYTKPEMRYDYEENEY
FTEEDTEGEKPQGYGEAQENEENLIATVETRASYSDYDACDLVQDSGECQSYILKWYYNK
EQKMCGQFWYGGCGGNKNRFETQEECGFLCIESS
NT seq
4605 nt
NT seq
+upstream
nt +downstream
nt
atggtcagtggctttgatattggcccccatgtggtgcatggatcatctggtgttgcagac
ctgcagttcaaaaatgtgcaacggctcctaaaagcagtagctaatgactcagtgattggg
gtgaataaagttcattttggtgttttggtctgtagatgcaagtgggagatgaatttctca
ctgagttcatactcctctgagtctcacagtagagaagcaatattcaacttgaagcctctg
ccaggccagcccttcacagcaagagctttgagcttttccaggcagagactaggtgtgaac
tagggtgggcatgcatctttccgtgctgtcaccaggatccttactcttactgatgaacca
gctgtaccattggatagagccaaccttcgcatggctgtaaaagctttgaagggaggtgaa
atcaacttaactgctgttggagtgaaaaaagcaagcagagcagaacttgaagagattact
gaaggtcaagaaagattactctttggacaaagctatgatgcactgccaataaaaatgcta
gggaacttgcttcttggccattcagtttgcaacagtcaagtggcagatctggtattcctg
gtagatggantcagcatataaaaaagtaacttttctgtcatgaagatcttaatgatggaa
gttgtggacagctttgttatttctagggaaaaggtatgtgtcagagtagtccagtacagc
caagaaaaaaaatattctcttaacgagttctgcactgacaccatgataaaggaacagatc
aacagaattgagcagttgcattcttctgcgttcgctggcaaatggctgaggcttctccgg
agcttttttcagcctgccagtagaggtcgcaagagccagggagtgtcacagaaccttgta
gtgattacaggtngctctgctgtcagactggaggatgcagcaatggctttgagaagtgat
gggagccatgtcattgcagttggcataaggattataaattcctttgagctgcttttaata
gcttgtgatgcaaggagattgttcacagtagaaaaccttgatgcaatgaaaaccctcggg
aggagtattgtcaatcaggtctgtgaatccaaatgtcttccgagctaggattgcaacata
gatctttctatagcaattgatatttcaaggcgcatgcagccagcatccacggtgcttctg
aaacagaaattgcaagcattcctccccaagcttttactccagatgaaattgctgccaaat
accagctgtaatgctggctctccagtcaacattagattcaagttccaagtattagcacag
acgagagaattcatctttgactctgattttgaagaatataatgaagagatcatacagaag
ttcttagatacacagaccactgtggacacctacctgaatgcagagttcttacaggcactt
ggggagaagttctttaacgtgacctctgctaacattaaggttctgttagtattttcagat
gggctggatgattcgctggaagatcttagaaaagcagctgactcacttcactttaaaggt
cttgatgcatttctattagttggcctggacaatacacagaatttgacggaacttcgggaa
atagagtttggcagaggatttggatacaatgaacctctgagtgttgggtttgcagagatt
gcaaacatattgcagagaaatcttgatactgttgcagaaaggaaatgctgtaaggtggtt
tgtaaatgccttggggaaaatggtgatcctggtggccagggaagtcctggaaggaaggga
agtacagggtacagaggatctcctggccatcctggtgaggaaggtggaattggggagaga
ggcccagttggtttcaatggcactcaaggagacaggggatgtccaggtgccagaggccat
aagggggccagaggctatagaggaagtcagggtgaacatggtgagagtggctttgatggt
accgacggagagcagggagaccgtggaattcctggaccttctggagagaaaggcaatgca
ggaaaacaaggcagaaaaggccccagaggagaaccaggtgaacgaggagaatctggtcta
agaggagatcatggagatcctggaactagcaataatgttcctggtcctaagggtgaaaag
ggaaacccagcacatcagggagacccaggaccacatggactccaaggagagcagggtgat
gctggcccttatggagcagcaggtcgaagaggccctccaggtgtaaagggtgagcaagga
gatctgggggaagcaggttacccaggagactctggtcttccaggcccacagggcccaaga
ggaccacaagggatcagaggacctccaggaccacaaggcatgccaggccctctggctagt
ctgggggccccaggtgcacctggctctgttggaaagttaggtgcaagaggagcaaagggt
gaacctggtgaccctggagagaagggcccagtgggaccagctggatggagaggcatgcct
ggagtggatggcagggatgcctatggtcctgaaggaagcaaaggagcaaagggagaatct
ggattcacaggatatcctggtccagagggagaagatggagacccaggcattccaggagct
gaaggacccaaaggagttaggggtagaagaggaaatgctggcataccaggttccctggga
gatccaggggaccaagggccatcaggacctatgggcgccaagggaccaatgggcaccgtt
ttaatggaaccttgtgaacttgtgaattttacacgaaaaaactgcccttgctcatcagac
acgtgtccagtttatccaactgaagtggtgtttgcctttgatatgtctgatgatgttaca
ccagctgcatttgaaagaatgaggaacattgttatgttattgctgaagaccattaagatc
agtgaaagcaattgcccaacaggtgctcgtgtctccgttgtttctttcaataccaatacg
cgctatctcatccgattctcagaattccaaaaaagcaacttgctgctacaagcagtccag
agaataccgctagagaggaccactggaaaacgtaatattggggcagccatgagatttgtt
tcaagaaatgtcttcaaacgtgttcgtcagggcatcctcacaagaaaagttgccctattt
tttgccaatggtccatcgcaagatggtgtcgccatcaacacagctgtacttgagttgagt
gcctcggatatcactccagtggttattgccttcagtgaagtgccaaatgtcagacgtgcc
ttctcaattgatgatactggaagatttcaattatttgtttgggaaagacaacaggatgaa
agtttgaagaacatcacatattgtacactttgctttgataaatgcaaaccaagtaccagc
tgcgtggtgcccttttctccccctgttctgatggatatggatatcacttacatcatggac
agctctcgaagcatcagcagtgaagagtttcagagagccaaagactttgtgagcaacatg
ctagatcagtttgtcatttcctcacagccaaatgaatcatacggaggtatcagagtggca
ctgctgcagcaggctcccaggggcttcctgcctgacagaaaccagacccctgtggccttg
gagtttgatctagtcacatacagcaataaagatttgatgaagaaacatatccaagaatct
gttcaccaactggaaggaccatcagccattgcttctgccctgcagtgggcggttgaaaat
gtgttttttaaagcccccagacaaagaaaacacagggtcgtatttgcaataattggaagc
aaaacaagcacatgggacagagagaagctgagagagatttcactcggagccaagtgccaa
ggattcaccttgttcactcttgcacttggcaatgacgtgagtgacaatcagctgatggag
ctgtcaagctcccctacagaccagcacttactggcattgagccgggtttcaatgtctgag
atggtatatgctcagaggtttagccgtgcatttctaaatcttctacaacaagaaacgaac
agttatccttcacctgaacttcaagaagagtgtgaaaacttagatcagggagacacacaa
cagcaagcgtctgcaattgaaaggatgccttttcccggaactggtgaaactggttatggt
catggtttagaagacattgaaagaactgaaagtggagtctgggagaatattagagagacc
accacagaacctgtgtacacaaagccagaaatgagatatgattatgaggagaatgagtat
ttcacagaggaagatactgaaggagaaaagccacaagggtatggagaagctcaggagaac
gaggaaaacttaatagcaacagtagaaactagagcttcctatagtgattatgatgcatgt
gaccttgttcaagatagtggagaatgtcagagttatattctgaagtggtactacaacaaa
gagcagaaaatgtgtggtcaattctggtacgggggctgtggaggcaataaaaatagattt
gaaacacaagaagaatgtggattcttgtgtatagagtcttcctag
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integrated database retrieval system
